Wall clock time and date at job start Tue Mar 31 2020 22:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36621 * 120.92330 * 2 1 4 4 C 1.39264 * 119.90507 * 180.02562 * 3 2 1 5 5 N 1.31140 * 121.77828 * 359.97438 * 4 3 2 6 6 C 1.33618 * 121.38965 * 0.02562 * 5 4 3 7 7 C 1.40767 * 120.84188 * 179.97438 * 6 5 4 8 8 C 1.35703 * 120.11466 * 180.02562 * 7 6 5 9 9 C 1.40636 * 120.92682 * 0.02562 * 8 7 6 10 10 C 1.47761 * 119.80510 * 179.97438 * 9 8 7 11 11 O 1.21564 * 120.00197 * 184.53972 * 10 9 8 12 12 N 1.34782 * 120.00060 * 4.54349 * 10 9 8 13 13 C 1.47421 * 125.65068 * 182.81960 * 12 10 9 14 14 C 1.54904 * 104.83287 * 155.82828 * 13 12 10 15 15 C 1.55158 * 101.58155 * 37.01343 * 14 13 12 16 16 H 1.08997 * 110.72128 * 83.03136 * 15 14 13 17 17 N 1.46495 * 110.72539 * 206.13553 * 15 14 13 18 18 C 1.36943 * 119.99937 * 273.54702 * 17 15 14 19 19 H 1.08008 * 119.99641 * 359.97438 * 18 17 15 20 20 C 1.38806 * 120.00207 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99947 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99962 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47080 * 90.00283 * 22 20 18 24 24 H 1.48505 * 109.47128 * 209.99876 * 22 20 18 25 25 H 1.48494 * 109.47259 * 329.99846 * 22 20 18 26 26 C 1.47020 * 125.64263 * 2.50616 * 12 10 9 27 27 H 1.08996 * 109.88920 * 300.51599 * 26 12 10 28 28 C 1.53004 * 109.88324 * 61.68533 * 26 12 10 29 29 C 1.38553 * 120.39258 * 0.02562 * 9 8 7 30 30 C 1.40184 * 119.40065 * 359.97438 * 29 9 8 31 31 H 1.08997 * 109.47237 * 269.97935 * 1 2 3 32 32 H 1.09001 * 109.47412 * 29.97726 * 1 2 3 33 33 H 1.09001 * 109.47168 * 149.97747 * 1 2 3 34 34 H 1.08001 * 120.04103 * 359.97438 * 3 2 1 35 35 H 1.08008 * 119.11126 * 180.02562 * 4 3 2 36 36 H 1.08005 * 119.94609 * 359.97438 * 7 6 5 37 37 H 1.07997 * 119.53769 * 180.02562 * 8 7 6 38 38 H 1.09001 * 110.36762 * 274.67666 * 13 12 10 39 39 H 1.09001 * 110.36375 * 36.88401 * 13 12 10 40 40 H 1.09000 * 111.00334 * 155.08189 * 14 13 12 41 41 H 1.08993 * 111.00735 * 278.93589 * 14 13 12 42 42 H 0.97001 * 120.00749 * 93.53833 * 17 15 14 43 43 H 0.97003 * 119.99547 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.46732 * 76.68594 * 28 26 12 45 45 H 1.09000 * 109.47102 * 196.68678 * 28 26 12 46 46 H 1.08994 * 109.46949 * 316.68774 * 28 26 12 47 47 H 1.08001 * 120.29936 * 179.70934 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2722 0.0204 -0.0006 6 6 3.6480 -1.1611 -0.0006 7 6 4.3794 -2.3638 -0.0011 8 6 3.7303 -3.5555 -0.0017 9 6 2.3251 -3.6131 -0.0022 10 6 1.6438 -4.9243 -0.0033 11 8 0.4324 -4.9798 -0.0871 12 7 2.3656 -6.0588 0.0886 13 6 1.8230 -7.4287 0.0403 14 6 3.0066 -8.3076 -0.4352 15 6 4.2048 -7.6307 0.2815 16 1 4.2933 -7.9891 1.3070 17 7 5.4488 -7.8634 -0.4562 18 6 6.1785 -8.9994 -0.2270 19 1 5.8369 -9.7235 0.4979 20 6 7.3570 -9.2202 -0.9264 21 7 8.0585 -10.3118 -0.7057 22 14 7.9474 -7.9681 -2.1806 23 1 8.8225 -6.9722 -1.5117 24 1 8.7120 -8.6604 -3.2490 25 1 6.7771 -7.2765 -2.7783 26 6 3.8252 -6.1352 0.2472 27 1 4.3157 -5.6456 -0.5940 28 6 4.2420 -5.4652 1.5581 29 6 1.5757 -2.4477 -0.0027 30 6 2.2308 -1.2083 -0.0022 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6849 2.1163 -0.0004 35 1 4.1436 2.0814 -0.0001 36 1 5.4592 -2.3381 -0.0020 37 1 4.3008 -4.4725 -0.0017 38 1 1.4924 -7.7410 1.0309 39 1 0.9976 -7.4849 -0.6694 40 1 2.8853 -9.3389 -0.1038 41 1 3.1201 -8.2576 -1.5180 42 1 5.7558 -7.2130 -1.1071 43 1 8.8823 -10.4659 -1.1942 44 1 4.0168 -6.1290 2.3929 45 1 5.3120 -5.2587 1.5364 46 1 3.6940 -4.5308 1.6788 47 1 0.4967 -2.4937 -0.0079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986312434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:38 Heat of formation + Delta-G solvation = 79.627191 kcal Electronic energy + Delta-G solvation = -29383.637551 eV Core-core repulsion = 25533.322674 eV Total energy + Delta-G solvation = -3850.314877 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46260 -40.34017 -37.86183 -37.04758 -35.00014 -34.35549 -32.54317 -31.70158 -30.76064 -30.04290 -29.59295 -28.16601 -25.71961 -24.89343 -23.78705 -22.95658 -22.52813 -21.26001 -20.54793 -19.84221 -18.65864 -17.95496 -17.24598 -16.88344 -16.12355 -15.93809 -15.38557 -15.15230 -14.82077 -14.58466 -14.36355 -14.17490 -13.94404 -13.86443 -13.45233 -13.25029 -13.20248 -13.05892 -12.89770 -12.69260 -12.45553 -12.25536 -12.00647 -11.91150 -11.72279 -11.46522 -11.36965 -11.04333 -10.95192 -10.72324 -10.47540 -10.40536 -10.17389 -9.91612 -9.74140 -9.69303 -9.05709 -8.95694 -8.66903 -8.38773 -7.42946 -5.88152 -3.26673 -0.02137 0.45271 1.64736 2.25677 2.91813 3.18372 3.29994 3.31963 3.39457 3.87156 4.01408 4.18903 4.29552 4.30981 4.47131 4.48691 4.65125 4.76560 4.83651 4.87091 4.97144 5.04086 5.11564 5.14258 5.17887 5.24627 5.32170 5.38264 5.48498 5.54475 5.59534 5.61925 5.67652 5.73970 5.75237 5.84343 5.91014 6.02719 6.08936 6.10231 6.11660 6.24625 6.27190 6.34564 6.49168 6.54806 6.71199 7.50525 7.64931 7.84591 8.10444 8.29553 9.05370 9.77687 9.94611 11.29408 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.003195 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.604675 B = 8760.759618 C =10248.550020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.012 4.012 3 C -0.190 4.190 4 C 0.142 3.858 5 N -0.482 5.482 6 C 0.150 3.850 7 C -0.108 4.108 8 C -0.111 4.111 9 C -0.130 4.130 10 C 0.574 3.426 11 O -0.545 6.545 12 N -0.600 5.600 13 C 0.107 3.893 14 C -0.155 4.155 15 C 0.183 3.817 16 H 0.079 0.921 17 N -0.739 5.739 18 C -0.250 4.250 19 H 0.093 0.907 20 C 0.011 3.989 21 N -0.929 5.929 22 Si 0.881 3.119 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.277 1.277 26 C 0.101 3.899 27 H 0.091 0.909 28 C -0.176 4.176 29 C -0.030 4.030 30 C -0.118 4.118 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.142 0.858 37 H 0.182 0.818 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.362 0.638 43 H 0.261 0.739 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.068 0.932 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.780 21.409 2.783 25.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.020 4.020 3 C -0.210 4.210 4 C -0.030 4.030 5 N -0.191 5.191 6 C 0.029 3.971 7 C -0.127 4.127 8 C -0.130 4.130 9 C -0.133 4.133 10 C 0.363 3.637 11 O -0.425 6.425 12 N -0.333 5.333 13 C -0.016 4.016 14 C -0.196 4.196 15 C 0.072 3.928 16 H 0.096 0.904 17 N -0.381 5.381 18 C -0.379 4.379 19 H 0.111 0.889 20 C -0.186 4.186 21 N -0.575 5.575 22 Si 0.711 3.289 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.203 1.203 26 C -0.002 4.002 27 H 0.108 0.892 28 C -0.234 4.234 29 C -0.049 4.049 30 C -0.120 4.120 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.155 0.845 35 H 0.177 0.823 36 H 0.159 0.841 37 H 0.198 0.802 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.196 0.804 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.406 21.079 2.824 25.140 hybrid contribution -0.270 0.919 -0.995 1.381 sum -13.676 21.998 1.829 25.967 Atomic orbital electron populations 1.20940 0.89821 1.03914 1.03435 1.20239 0.96732 0.92033 0.92960 1.21738 0.95633 0.98713 1.04953 1.22995 0.91511 0.96521 0.91986 1.68094 1.39895 0.97718 1.13348 1.19075 0.89543 0.92623 0.95881 1.20758 1.00753 0.89623 1.01558 1.22956 0.94234 1.01413 0.94360 1.19897 0.93898 0.93314 1.06189 1.17806 0.86169 0.83003 0.76673 1.90750 1.13299 1.87061 1.51344 1.48391 1.07970 1.06035 1.70899 1.22329 0.97632 0.80234 1.01379 1.23564 0.94772 0.99375 1.01928 1.21280 0.86363 0.88644 0.96493 0.90367 1.42695 1.23660 1.24664 1.47114 1.18996 1.02029 0.96842 1.20066 0.88929 1.24664 0.97303 0.97145 0.99492 1.69694 1.16866 1.26246 1.44721 0.86619 0.78703 0.81548 0.82053 1.20812 1.21595 1.20283 1.22413 0.80198 0.99650 0.97985 0.89217 1.22739 1.02729 1.00980 0.96931 1.21432 1.00527 0.89732 0.93245 1.18644 0.94151 0.93868 1.05373 0.89900 0.90475 0.90377 0.84485 0.82334 0.84067 0.80215 0.91381 0.90732 0.89795 0.90615 0.80447 0.92865 0.91370 0.90216 0.91353 0.83802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.60 36.00 0.35 -0.47 16 2 C -0.01 -0.11 5.92 -104.22 -0.62 -0.73 16 3 C -0.19 -1.51 9.72 -39.78 -0.39 -1.89 16 4 C 0.14 1.29 11.14 -17.47 -0.19 1.10 16 5 N -0.48 -5.94 10.33 -10.92 -0.11 -6.05 16 6 C 0.15 1.94 6.61 -84.77 -0.56 1.38 16 7 C -0.11 -1.35 9.95 -39.53 -0.39 -1.75 16 8 C -0.11 -1.40 6.32 -39.58 -0.25 -1.66 16 9 C -0.13 -1.76 5.31 -104.98 -0.56 -2.32 16 10 C 0.57 8.81 7.57 -12.37 -0.09 8.72 16 11 O -0.55 -9.61 16.59 5.31 0.09 -9.52 16 12 N -0.60 -8.73 3.07 -170.65 -0.52 -9.25 16 13 C 0.11 1.49 6.90 -2.53 -0.02 1.47 16 14 C -0.16 -2.40 6.76 -24.58 -0.17 -2.57 16 15 C 0.18 3.07 3.11 -66.10 -0.21 2.87 16 16 H 0.08 1.33 7.56 -51.93 -0.39 0.94 16 17 N -0.74 -15.56 5.05 -51.65 -0.26 -15.83 16 18 C -0.25 -6.47 10.46 -15.06 -0.16 -6.62 16 19 H 0.09 2.58 8.06 -52.48 -0.42 2.15 16 20 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 21 N -0.93 -27.84 13.97 55.49 0.78 -27.06 16 22 Si 0.88 20.84 27.73 -169.99 -4.71 16.12 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.13 6.52 56.52 0.37 -5.76 16 26 C 0.10 1.44 2.45 -66.95 -0.16 1.28 16 27 H 0.09 1.28 5.66 -51.93 -0.29 0.99 16 28 C -0.18 -2.21 7.77 37.16 0.29 -1.92 16 29 C -0.03 -0.37 8.89 -38.74 -0.34 -0.71 16 30 C -0.12 -1.40 5.74 -106.82 -0.61 -2.02 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 33 H 0.08 0.54 6.51 -51.93 -0.34 0.20 16 34 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.18 2.24 1.95 -61.18 -0.12 2.13 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.36 7.52 5.36 -40.82 -0.22 7.30 16 43 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.07 0.84 7.69 -51.93 -0.40 0.44 16 45 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 46 H 0.07 0.83 4.76 -51.93 -0.25 0.58 16 47 H 0.14 1.65 6.00 -52.49 -0.31 1.33 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -32.38 370.07 -9.49 -41.87 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -6.14 Total: 9.79 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -4.18 Total: -5.65 kcal Atomic # 7 Polarization: -58.07 SS G_CDS: -0.12 Total: -58.19 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.71 Total: 16.12 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.38 -9.49 -41.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986312434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.501 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds