Wall clock time and date at job start Tue Mar 31 2020 22:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36621 * 120.92330 * 2 1 4 4 C 1.39264 * 119.90507 * 180.02562 * 3 2 1 5 5 N 1.31140 * 121.77828 * 359.97438 * 4 3 2 6 6 C 1.33618 * 121.38965 * 0.02562 * 5 4 3 7 7 C 1.40767 * 120.84188 * 179.97438 * 6 5 4 8 8 C 1.35703 * 120.11466 * 180.02562 * 7 6 5 9 9 C 1.40636 * 120.92682 * 0.02562 * 8 7 6 10 10 C 1.47761 * 119.80510 * 179.97438 * 9 8 7 11 11 O 1.21564 * 120.00197 * 184.53972 * 10 9 8 12 12 N 1.34782 * 120.00060 * 4.54349 * 10 9 8 13 13 C 1.47421 * 125.65068 * 182.81960 * 12 10 9 14 14 C 1.54904 * 104.83287 * 155.82828 * 13 12 10 15 15 C 1.55158 * 101.58155 * 37.01343 * 14 13 12 16 16 H 1.08997 * 110.72128 * 83.03136 * 15 14 13 17 17 N 1.46495 * 110.72539 * 206.13553 * 15 14 13 18 18 C 1.36943 * 119.99937 * 273.54702 * 17 15 14 19 19 H 1.08008 * 119.99641 * 359.97438 * 18 17 15 20 20 C 1.38806 * 120.00207 * 179.97438 * 18 17 15 21 21 N 1.31623 * 119.99947 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99962 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47080 * 90.00283 * 22 20 18 24 24 H 1.48505 * 109.47128 * 209.99876 * 22 20 18 25 25 H 1.48494 * 109.47259 * 329.99846 * 22 20 18 26 26 C 1.47020 * 125.64263 * 2.50616 * 12 10 9 27 27 H 1.08996 * 109.88920 * 300.51599 * 26 12 10 28 28 C 1.53004 * 109.88324 * 61.68533 * 26 12 10 29 29 C 1.38553 * 120.39258 * 0.02562 * 9 8 7 30 30 C 1.40184 * 119.40065 * 359.97438 * 29 9 8 31 31 H 1.08997 * 109.47237 * 269.97935 * 1 2 3 32 32 H 1.09001 * 109.47412 * 29.97726 * 1 2 3 33 33 H 1.09001 * 109.47168 * 149.97747 * 1 2 3 34 34 H 1.08001 * 120.04103 * 359.97438 * 3 2 1 35 35 H 1.08008 * 119.11126 * 180.02562 * 4 3 2 36 36 H 1.08005 * 119.94609 * 359.97438 * 7 6 5 37 37 H 1.07997 * 119.53769 * 180.02562 * 8 7 6 38 38 H 1.09001 * 110.36762 * 274.67666 * 13 12 10 39 39 H 1.09001 * 110.36375 * 36.88401 * 13 12 10 40 40 H 1.09000 * 111.00334 * 155.08189 * 14 13 12 41 41 H 1.08993 * 111.00735 * 278.93589 * 14 13 12 42 42 H 0.97001 * 120.00749 * 93.53833 * 17 15 14 43 43 H 0.97003 * 119.99547 * 180.02562 * 21 20 18 44 44 H 1.09003 * 109.46732 * 76.68594 * 28 26 12 45 45 H 1.09000 * 109.47102 * 196.68678 * 28 26 12 46 46 H 1.08994 * 109.46949 * 316.68774 * 28 26 12 47 47 H 1.08001 * 120.29936 * 179.70934 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2722 0.0204 -0.0006 6 6 3.6480 -1.1611 -0.0006 7 6 4.3794 -2.3638 -0.0011 8 6 3.7303 -3.5555 -0.0017 9 6 2.3251 -3.6131 -0.0022 10 6 1.6438 -4.9243 -0.0033 11 8 0.4324 -4.9798 -0.0871 12 7 2.3656 -6.0588 0.0886 13 6 1.8230 -7.4287 0.0403 14 6 3.0066 -8.3076 -0.4352 15 6 4.2048 -7.6307 0.2815 16 1 4.2933 -7.9891 1.3070 17 7 5.4488 -7.8634 -0.4562 18 6 6.1785 -8.9994 -0.2270 19 1 5.8369 -9.7235 0.4979 20 6 7.3570 -9.2202 -0.9264 21 7 8.0585 -10.3118 -0.7057 22 14 7.9474 -7.9681 -2.1806 23 1 8.8225 -6.9722 -1.5117 24 1 8.7120 -8.6604 -3.2490 25 1 6.7771 -7.2765 -2.7783 26 6 3.8252 -6.1352 0.2472 27 1 4.3157 -5.6456 -0.5940 28 6 4.2420 -5.4652 1.5581 29 6 1.5757 -2.4477 -0.0027 30 6 2.2308 -1.2083 -0.0022 31 1 -0.3633 -0.0004 1.0276 32 1 -0.3634 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 1.6849 2.1163 -0.0004 35 1 4.1436 2.0814 -0.0001 36 1 5.4592 -2.3381 -0.0020 37 1 4.3008 -4.4725 -0.0017 38 1 1.4924 -7.7410 1.0309 39 1 0.9976 -7.4849 -0.6694 40 1 2.8853 -9.3389 -0.1038 41 1 3.1201 -8.2576 -1.5180 42 1 5.7558 -7.2130 -1.1071 43 1 8.8823 -10.4659 -1.1942 44 1 4.0168 -6.1290 2.3929 45 1 5.3120 -5.2587 1.5364 46 1 3.6940 -4.5308 1.6788 47 1 0.4967 -2.4937 -0.0079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986312434.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:37 Heat of formation + Delta-G solvation = 59.859991 kcal Electronic energy + Delta-G solvation = -29384.494721 eV Core-core repulsion = 25533.322674 eV Total energy + Delta-G solvation = -3851.172047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.41255 -41.34998 -39.12889 -37.98524 -36.10143 -35.68032 -33.69705 -33.39263 -31.78863 -31.03857 -30.90146 -28.81152 -27.12449 -25.86666 -24.69277 -24.56910 -23.64890 -22.09355 -21.88808 -20.95978 -19.75714 -19.64263 -18.25027 -17.80209 -17.33788 -16.94785 -16.54508 -16.35899 -16.06971 -15.64234 -15.41367 -15.27745 -15.15738 -14.98972 -14.68794 -14.35474 -14.13007 -13.99155 -13.87355 -13.72866 -13.59683 -13.49838 -13.20013 -13.07109 -12.79130 -12.72463 -12.55984 -12.49829 -12.16410 -12.08034 -12.00140 -11.78928 -11.52991 -11.17417 -11.11882 -10.94694 -10.51330 -9.92322 -9.73698 -9.32192 -9.27013 -7.99548 -5.34641 -0.86449 -0.37441 0.80583 1.32866 1.41672 1.43892 1.50618 1.76742 2.18569 2.50753 3.01636 3.12929 3.25770 3.32651 3.44780 3.45766 3.56639 3.67976 3.77100 3.80183 3.90552 3.98116 4.02659 4.19495 4.24496 4.30749 4.41959 4.45430 4.49613 4.63464 4.69444 4.70640 4.73543 4.83577 4.84952 4.87036 4.89700 5.02824 5.10025 5.12497 5.17848 5.20789 5.22566 5.33027 5.37492 5.48814 5.74363 5.79663 6.23075 6.33291 6.88539 6.93002 7.08344 7.81455 7.99777 9.21314 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014477 B = 0.003195 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.604675 B = 8760.759618 C =10248.550020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.018 4.018 3 C -0.181 4.181 4 C 0.144 3.856 5 N -0.516 5.516 6 C 0.134 3.866 7 C -0.116 4.116 8 C -0.110 4.110 9 C -0.151 4.151 10 C 0.574 3.426 11 O -0.573 6.573 12 N -0.601 5.601 13 C 0.111 3.889 14 C -0.148 4.148 15 C 0.176 3.824 16 H 0.077 0.923 17 N -0.740 5.740 18 C -0.224 4.224 19 H 0.064 0.936 20 C -0.058 4.058 21 N -0.982 5.982 22 Si 0.945 3.055 23 H -0.275 1.275 24 H -0.302 1.302 25 H -0.252 1.252 26 C 0.112 3.888 27 H 0.095 0.905 28 C -0.171 4.171 29 C -0.023 4.023 30 C -0.135 4.135 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.176 0.824 35 H 0.193 0.807 36 H 0.147 0.853 37 H 0.180 0.820 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.366 0.634 43 H 0.257 0.743 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.074 0.926 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.158 25.185 2.589 29.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.026 4.026 3 C -0.201 4.201 4 C -0.027 4.027 5 N -0.225 5.225 6 C 0.013 3.987 7 C -0.135 4.135 8 C -0.129 4.129 9 C -0.154 4.154 10 C 0.365 3.635 11 O -0.455 6.455 12 N -0.332 5.332 13 C -0.011 4.011 14 C -0.189 4.189 15 C 0.067 3.933 16 H 0.095 0.905 17 N -0.383 5.383 18 C -0.355 4.355 19 H 0.082 0.918 20 C -0.250 4.250 21 N -0.632 5.632 22 Si 0.773 3.227 23 H -0.201 1.201 24 H -0.229 1.229 25 H -0.176 1.176 26 C 0.008 3.992 27 H 0.112 0.888 28 C -0.228 4.228 29 C -0.042 4.042 30 C -0.137 4.137 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.194 0.806 35 H 0.210 0.790 36 H 0.165 0.835 37 H 0.197 0.803 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.200 0.800 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.834 24.894 2.644 29.099 hybrid contribution 0.042 -0.108 -0.861 0.869 sum -14.792 24.786 1.783 28.920 Atomic orbital electron populations 1.21015 0.87881 1.04764 1.04317 1.20623 0.98203 0.91519 0.92297 1.22167 0.95242 0.99825 1.02816 1.23701 0.92593 0.96787 0.89628 1.68129 1.40820 0.98318 1.15230 1.19267 0.90151 0.93104 0.96217 1.20874 1.01128 0.89752 1.01747 1.22812 0.93763 1.01411 0.94875 1.19806 0.94318 0.92698 1.08566 1.18066 0.85876 0.83576 0.75953 1.90725 1.14411 1.87477 1.52894 1.48404 1.08003 1.06134 1.70703 1.22303 0.96866 0.79736 1.02157 1.23404 0.94705 0.99672 1.01073 1.21444 0.85077 0.90855 0.95949 0.90517 1.42621 1.24659 1.23307 1.47713 1.18944 1.01579 0.97144 1.17848 0.91792 1.25409 0.98037 0.99257 1.02320 1.69870 1.17664 1.28887 1.46778 0.85561 0.78770 0.79158 0.79218 1.20104 1.22913 1.17633 1.22282 0.80105 0.97615 0.99200 0.88826 1.22696 1.03191 1.01097 0.95863 1.21554 1.00761 0.89784 0.92140 1.18843 0.94138 0.94690 1.06043 0.88867 0.88089 0.91097 0.80616 0.79042 0.83509 0.80331 0.90002 0.90517 0.89734 0.91599 0.79969 0.93428 0.91235 0.89568 0.90741 0.83303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.60 71.23 0.68 -0.55 16 2 C -0.02 -0.29 5.92 -19.60 -0.12 -0.41 16 3 C -0.18 -2.16 9.72 22.14 0.22 -1.94 16 4 C 0.14 2.16 11.14 85.04 0.95 3.11 16 5 N -0.52 -11.78 10.33 -188.46 -1.95 -13.73 16 6 C 0.13 3.30 6.61 40.37 0.27 3.57 16 7 C -0.12 -2.83 9.95 22.30 0.22 -2.61 16 8 C -0.11 -2.70 6.32 22.27 0.14 -2.56 16 9 C -0.15 -4.00 5.31 -20.10 -0.11 -4.11 16 10 C 0.57 17.28 7.57 86.76 0.66 17.94 16 11 O -0.57 -19.97 16.59 -3.92 -0.06 -20.04 16 12 N -0.60 -16.93 3.07 -812.07 -2.49 -19.42 16 13 C 0.11 3.01 6.90 86.85 0.60 3.61 16 14 C -0.15 -4.48 6.76 31.98 0.22 -4.27 16 15 C 0.18 5.79 3.11 46.18 0.14 5.93 16 16 H 0.08 2.58 7.56 -2.39 -0.02 2.56 16 17 N -0.74 -30.68 5.05 -317.33 -1.60 -32.28 16 18 C -0.22 -11.74 10.46 84.03 0.88 -10.86 16 19 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 20 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 21 N -0.98 -60.61 13.97 21.65 0.30 -60.31 16 22 Si 0.95 43.11 27.73 68.60 1.90 45.01 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 25 H -0.25 -10.29 6.52 99.48 0.65 -9.64 16 26 C 0.11 3.06 2.45 45.34 0.11 3.17 16 27 H 0.09 2.55 5.66 -2.39 -0.01 2.54 16 28 C -0.17 -4.09 7.77 71.98 0.56 -3.53 16 29 C -0.02 -0.54 8.89 22.82 0.20 -0.34 16 30 C -0.13 -3.01 5.74 -21.29 -0.12 -3.13 16 31 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.10 0.53 8.10 -2.39 -0.02 0.51 16 33 H 0.07 0.83 6.51 -2.39 -0.02 0.81 16 34 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 35 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 37 H 0.18 4.28 1.95 -11.08 -0.02 4.26 16 38 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.08 2.07 8.06 -2.39 -0.02 2.05 16 40 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.37 14.64 5.36 -92.71 -0.50 14.14 16 43 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 44 H 0.07 1.64 7.69 -2.39 -0.02 1.62 16 45 H 0.09 1.96 8.11 -2.39 -0.02 1.94 16 46 H 0.07 1.74 4.76 -2.39 -0.01 1.72 16 47 H 0.15 3.30 6.00 -2.91 -0.02 3.28 16 Total: -1.00 -71.56 370.07 2.51 -69.05 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: 0.45 Total: 31.50 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.97 Total: 0.20 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -5.74 Total: -125.73 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.06 Total: -20.04 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.90 Total: 45.01 kcal Total: -71.56 2.51 -69.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986312434.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.909 kcal (2) G-P(sol) polarization free energy of solvation -71.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds