Wall clock time and date at job start Tue Mar 31 2020 22:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30828 * 119.23249 * 2 1 4 4 C 1.33790 * 121.71723 * 180.23211 * 3 2 1 5 5 C 1.40533 * 120.81694 * 179.76735 * 4 3 2 6 6 C 1.36123 * 119.81534 * 180.02562 * 5 4 3 7 7 C 1.39339 * 121.09109 * 359.95802 * 6 5 4 8 8 C 1.36134 * 120.84378 * 0.02562 * 7 6 5 9 9 C 1.40544 * 119.61910 * 0.02562 * 8 7 6 10 10 C 1.40495 * 121.24069 * 179.97438 * 9 8 7 11 11 C 1.39052 * 117.96471 * 180.02562 * 10 9 8 12 12 C 1.47758 * 120.26495 * 179.97438 * 11 10 9 13 13 O 1.21567 * 120.00098 * 142.05156 * 12 11 10 14 14 N 1.34775 * 119.99955 * 322.06099 * 12 11 10 15 15 C 1.47420 * 125.65205 * 354.99303 * 14 12 11 16 16 C 1.55125 * 104.94435 * 203.97405 * 15 14 12 17 17 C 1.55160 * 101.48310 * 323.21951 * 16 15 14 18 18 H 1.08999 * 110.72158 * 276.82808 * 17 16 15 19 19 N 1.46502 * 110.71661 * 153.73657 * 17 16 15 20 20 C 1.36930 * 119.99962 * 88.84214 * 19 17 16 21 21 H 1.07998 * 120.00110 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00068 * 179.97438 * 20 19 17 23 23 N 1.31623 * 119.99786 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 120.00189 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47188 * 270.00142 * 24 22 20 26 26 H 1.48499 * 109.47262 * 30.00664 * 24 22 20 27 27 H 1.48502 * 109.47153 * 150.00607 * 24 22 20 28 28 C 1.47023 * 125.64658 * 174.95590 * 14 12 11 29 29 H 1.08999 * 109.88730 * 298.39351 * 28 14 12 30 30 C 1.53005 * 109.88234 * 59.55357 * 28 14 12 31 31 H 1.08997 * 109.47686 * 264.70417 * 1 2 3 32 32 H 1.09003 * 109.46835 * 24.70099 * 1 2 3 33 33 H 1.09001 * 109.47310 * 144.69630 * 1 2 3 34 34 H 1.08004 * 120.08649 * 0.03892 * 5 4 3 35 35 H 1.08005 * 119.45467 * 179.97438 * 6 5 4 36 36 H 1.08007 * 119.57594 * 180.02562 * 7 6 5 37 37 H 1.08005 * 120.19172 * 179.97438 * 8 7 6 38 38 H 1.08002 * 121.01570 * 0.02562 * 10 9 8 39 39 H 1.09001 * 110.36664 * 322.93808 * 15 14 12 40 40 H 1.08997 * 110.36752 * 85.25742 * 15 14 12 41 41 H 1.08999 * 111.15720 * 205.13331 * 16 15 14 42 42 H 1.08995 * 110.93603 * 81.21456 * 16 15 14 43 43 H 0.96998 * 119.99677 * 268.84101 * 19 17 16 44 44 H 0.97000 * 119.99772 * 179.97438 * 23 22 20 45 45 H 1.09002 * 109.47407 * 177.80741 * 30 28 14 46 46 H 1.08994 * 109.47382 * 297.80977 * 30 28 14 47 47 H 1.09001 * 109.46747 * 57.80993 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1459 1.1417 0.0000 4 6 3.4825 1.1997 -0.0046 5 6 4.1494 2.4367 -0.0094 6 6 5.5102 2.4719 -0.0146 7 6 6.2604 1.2977 -0.0143 8 6 5.6512 0.0803 -0.0094 9 6 4.2478 0.0058 -0.0051 10 6 3.5838 -1.2324 -0.0005 11 6 2.1933 -1.2266 0.0031 12 6 1.4433 -2.4997 0.0074 13 8 0.4211 -2.6008 0.6577 14 7 1.8925 -3.5488 -0.7094 15 6 3.0524 -3.5344 -1.6192 16 6 2.7920 -4.6927 -2.6177 17 6 2.1341 -5.7532 -1.6958 18 1 2.8935 -6.3262 -1.1639 19 7 1.2630 -6.6425 -2.4682 20 6 1.7754 -7.7773 -3.0381 21 1 2.8215 -8.0170 -2.9177 22 6 0.9499 -8.6202 -3.7695 23 7 -0.3252 -8.3283 -3.9157 24 14 1.6490 -10.1679 -4.5475 25 1 2.1313 -9.8588 -5.9176 26 1 2.7803 -10.6676 -3.7254 27 1 0.5912 -11.2078 -4.6180 28 6 1.3074 -4.8976 -0.7129 29 1 1.3602 -5.3273 0.2875 30 6 -0.1488 -4.8319 -1.1778 31 1 -0.3634 -0.0948 1.0232 32 1 -0.3633 0.9337 -0.4295 33 1 -0.3634 -0.8387 -0.5939 34 1 3.5838 3.3567 -0.0088 35 1 6.0167 3.4258 -0.0187 36 1 7.3390 1.3542 -0.0181 37 1 6.2430 -0.8232 -0.0097 38 1 4.1365 -2.1602 0.0002 39 1 3.1084 -2.5825 -2.1473 40 1 3.9725 -3.7158 -1.0638 41 1 3.7253 -5.0663 -3.0389 42 1 2.1066 -4.3809 -3.4058 43 1 0.3233 -6.4274 -2.5759 44 1 -0.9019 -8.9172 -4.4272 45 1 -0.5641 -5.8390 -1.2152 46 1 -0.7263 -4.2265 -0.4793 47 1 -0.1934 -4.3835 -2.1703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986326177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:40 Heat of formation + Delta-G solvation = 44.230205 kcal Electronic energy + Delta-G solvation = -29188.733218 eV Core-core repulsion = 25336.883412 eV Total energy + Delta-G solvation = -3851.849806 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.32663 -39.92854 -37.96007 -37.00814 -34.50320 -33.71731 -32.14091 -31.76299 -30.79345 -30.40263 -28.85258 -27.92054 -25.35266 -25.01463 -23.56005 -22.82895 -22.59980 -22.33204 -20.31833 -18.99896 -18.37501 -17.58797 -17.31176 -16.81255 -16.08792 -15.76938 -15.52456 -14.97702 -14.81622 -14.54834 -14.40995 -14.10498 -13.81381 -13.70275 -13.33369 -13.23575 -13.15555 -12.80293 -12.54823 -12.27277 -12.15894 -11.99301 -11.83216 -11.74985 -11.59478 -11.56168 -11.26401 -11.01449 -10.89096 -10.74583 -10.51132 -10.28314 -10.07790 -10.01716 -9.73358 -9.47614 -8.99729 -8.96082 -8.55614 -8.48474 -7.07198 -5.85570 -3.15715 -0.02094 0.40030 1.60133 2.37019 2.88407 3.08980 3.38315 3.43769 3.45611 3.79917 3.90790 4.20379 4.30624 4.42552 4.49528 4.51448 4.68182 4.78585 4.90870 4.95039 5.09045 5.19864 5.25351 5.35632 5.45149 5.50185 5.52181 5.55897 5.59144 5.61092 5.64338 5.75342 5.77910 5.96516 6.00021 6.02078 6.06315 6.07790 6.17620 6.25182 6.26040 6.49415 6.50541 6.51916 6.66115 6.78791 6.93874 7.59158 7.62175 7.69216 8.18569 8.32796 9.44529 9.98963 10.33877 11.36768 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019180 B = 0.002615 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.507794 B =10705.073792 C =11772.805984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.210 3.790 3 N -0.482 5.482 4 C 0.146 3.854 5 C -0.100 4.100 6 C -0.093 4.093 7 C -0.125 4.125 8 C -0.085 4.085 9 C -0.117 4.117 10 C -0.018 4.018 11 C -0.174 4.174 12 C 0.576 3.424 13 O -0.527 6.527 14 N -0.601 5.601 15 C 0.094 3.906 16 C -0.153 4.153 17 C 0.174 3.826 18 H 0.065 0.935 19 N -0.716 5.716 20 C -0.246 4.246 21 H 0.071 0.929 22 C -0.010 4.010 23 N -0.930 5.930 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.281 1.281 27 H -0.291 1.291 28 C 0.129 3.871 29 H 0.074 0.926 30 C -0.160 4.160 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.149 0.851 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.391 0.609 44 H 0.257 0.743 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.853 20.411 8.049 24.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.056 3.944 3 N -0.191 5.191 4 C 0.025 3.975 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.143 4.143 8 C -0.103 4.103 9 C -0.119 4.119 10 C -0.044 4.044 11 C -0.179 4.179 12 C 0.363 3.637 13 O -0.404 6.404 14 N -0.335 5.335 15 C -0.030 4.030 16 C -0.195 4.195 17 C 0.062 3.938 18 H 0.083 0.917 19 N -0.360 5.360 20 C -0.377 4.377 21 H 0.089 0.911 22 C -0.206 4.206 23 N -0.578 5.578 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.207 1.207 27 H -0.217 1.217 28 C 0.025 3.975 29 H 0.092 0.908 30 C -0.218 4.218 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.150 0.850 38 H 0.166 0.834 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.229 0.771 44 H 0.067 0.933 45 H 0.099 0.901 46 H 0.082 0.918 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.940 21.067 8.376 25.173 hybrid contribution 0.772 -1.551 -0.609 1.836 sum 11.712 19.516 7.768 24.050 Atomic orbital electron populations 1.20858 0.87509 1.03476 1.04327 1.21505 0.97479 0.86265 0.89104 1.67880 1.08257 1.27982 1.14949 1.18999 0.89142 0.93035 0.96348 1.20812 0.94216 0.96381 1.00487 1.20963 0.93686 0.98831 0.97819 1.20919 1.00437 0.92268 1.00678 1.21054 0.92442 0.98749 0.98091 1.18782 0.94969 0.93578 1.04581 1.22158 0.93190 0.97911 0.91173 1.20842 0.94295 0.95208 1.07598 1.17569 0.84357 0.82098 0.79665 1.90780 1.23705 1.82803 1.43128 1.48513 1.30841 1.10702 1.43405 1.22565 0.88212 1.00465 0.91712 1.23616 1.02207 0.95466 0.98180 1.21184 0.92235 0.89800 0.90607 0.91729 1.42670 1.09138 1.24044 1.60105 1.19227 0.94229 0.98586 1.25644 0.91063 1.24761 0.95620 0.99232 1.01013 1.69658 1.03926 1.38954 1.45227 0.86179 0.77735 0.82907 0.79250 1.21680 1.20712 1.21730 1.21917 0.94839 0.80641 1.00064 0.90826 1.22025 0.95159 1.03321 1.01268 0.89154 0.90594 0.89801 0.84617 0.85208 0.85355 0.84963 0.83361 0.91305 0.91672 0.90413 0.90578 0.77051 0.93329 0.90105 0.91820 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 8.79 36.00 0.32 -0.97 16 2 C 0.21 2.84 6.81 -82.15 -0.56 2.28 16 3 N -0.48 -6.46 10.20 -6.93 -0.07 -6.53 16 4 C 0.15 1.75 6.61 -84.78 -0.56 1.19 16 5 C -0.10 -0.94 9.97 -39.48 -0.39 -1.34 16 6 C -0.09 -0.67 9.94 -39.93 -0.40 -1.06 16 7 C -0.13 -0.87 9.96 -39.93 -0.40 -1.26 16 8 C -0.08 -0.69 9.77 -39.47 -0.39 -1.07 16 9 C -0.12 -1.27 5.74 -106.81 -0.61 -1.88 16 10 C -0.02 -0.20 8.07 -38.43 -0.31 -0.51 16 11 C -0.17 -2.34 5.39 -104.83 -0.56 -2.90 16 12 C 0.58 8.83 6.67 -12.37 -0.08 8.75 16 13 O -0.53 -9.35 13.72 5.31 0.07 -9.28 16 14 N -0.60 -8.94 3.08 -164.02 -0.51 -9.44 16 15 C 0.09 1.18 5.25 -2.42 -0.01 1.17 16 16 C -0.15 -2.40 6.79 -24.46 -0.17 -2.56 16 17 C 0.17 3.19 3.46 -66.09 -0.23 2.96 16 18 H 0.06 1.17 8.11 -51.93 -0.42 0.75 16 19 N -0.72 -16.82 4.98 -51.65 -0.26 -17.08 16 20 C -0.25 -6.45 9.97 -15.06 -0.15 -6.60 16 21 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 23 N -0.93 -27.15 13.06 55.49 0.72 -26.43 16 24 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 C 0.13 2.19 3.51 -66.95 -0.24 1.95 16 29 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 30 C -0.16 -2.91 7.93 37.16 0.29 -2.62 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.12 6.74 -51.93 -0.35 0.77 16 34 H 0.14 1.10 8.06 -52.48 -0.42 0.68 16 35 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 36 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 37 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.15 1.35 5.96 -52.49 -0.31 1.04 16 39 H 0.07 0.80 7.31 -51.93 -0.38 0.42 16 40 H 0.07 0.67 6.98 -51.93 -0.36 0.30 16 41 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.39 9.77 4.99 -40.82 -0.20 9.57 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.08 1.61 6.72 -51.93 -0.35 1.26 16 46 H 0.06 1.15 6.62 -51.93 -0.34 0.81 16 47 H 0.06 1.06 8.06 -51.93 -0.42 0.64 16 LS Contribution 376.60 15.07 5.68 5.68 Total: -1.00 -31.37 376.60 -10.42 -41.79 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.49 Total: 9.54 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -4.54 Total: -4.84 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.11 Total: -59.48 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.07 Total: -9.28 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.37 -10.42 -41.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986326177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.019 kcal (2) G-P(sol) polarization free energy of solvation -31.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds