Wall clock time and date at job start Tue Mar 31 2020 22:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30817 * 119.22988 * 2 1 4 4 C 1.33786 * 121.71625 * 180.02562 * 3 2 1 5 5 C 1.40531 * 120.82186 * 179.97438 * 4 3 2 6 6 C 1.36130 * 119.81699 * 180.02562 * 5 4 3 7 7 C 1.39345 * 121.09173 * 359.96102 * 6 5 4 8 8 C 1.36140 * 120.83719 * 0.04110 * 7 6 5 9 9 C 1.40550 * 119.62034 * 359.97438 * 8 7 6 10 10 C 1.40489 * 121.22805 * 180.25532 * 9 8 7 11 11 C 1.39047 * 117.95959 * 180.24682 * 10 9 8 12 12 C 1.47761 * 120.26358 * 179.78864 * 11 10 9 13 13 O 1.21568 * 119.99826 * 142.16848 * 12 11 10 14 14 N 1.34774 * 120.00466 * 322.16199 * 12 11 10 15 15 C 1.47427 * 125.64792 * 354.91282 * 14 12 11 16 16 C 1.54902 * 104.83401 * 204.16040 * 15 14 12 17 17 C 1.55157 * 101.58247 * 322.98832 * 16 15 14 18 18 H 1.09002 * 110.71960 * 277.14293 * 17 16 15 19 19 N 1.46497 * 110.72275 * 153.86497 * 17 16 15 20 20 C 1.36932 * 120.00095 * 86.45271 * 19 17 16 21 21 H 1.08002 * 120.00016 * 0.02562 * 20 19 17 22 22 C 1.38812 * 120.00293 * 179.97438 * 20 19 17 23 23 N 1.31620 * 120.00069 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00250 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.46898 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.47105 * 120.00518 * 24 22 20 27 27 H 1.48501 * 109.46832 * 240.00185 * 24 22 20 28 28 C 1.47023 * 125.65182 * 174.94564 * 14 12 11 29 29 H 1.09002 * 109.87606 * 59.33834 * 28 14 12 30 30 C 1.52996 * 109.88402 * 298.32799 * 28 14 12 31 31 H 1.09001 * 109.47478 * 264.47164 * 1 2 3 32 32 H 1.09001 * 109.47013 * 24.47216 * 1 2 3 33 33 H 1.09007 * 109.47533 * 144.46890 * 1 2 3 34 34 H 1.08000 * 120.09699 * 359.97438 * 5 4 3 35 35 H 1.08007 * 119.45613 * 179.97438 * 6 5 4 36 36 H 1.07998 * 119.58252 * 180.02562 * 7 6 5 37 37 H 1.08003 * 120.19057 * 179.97438 * 8 7 6 38 38 H 1.07998 * 121.02084 * 0.02562 * 10 9 8 39 39 H 1.09000 * 110.36987 * 85.31475 * 15 14 12 40 40 H 1.09002 * 110.45732 * 323.04680 * 15 14 12 41 41 H 1.09007 * 111.00438 * 81.06218 * 16 15 14 42 42 H 1.08995 * 111.00824 * 204.91374 * 16 15 14 43 43 H 0.97003 * 120.00064 * 266.45618 * 19 17 16 44 44 H 0.97003 * 120.00599 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.47280 * 61.44937 * 30 28 14 46 46 H 1.09002 * 109.47268 * 181.45449 * 30 28 14 47 47 H 1.09000 * 109.47185 * 301.45560 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4824 1.1996 -0.0005 5 6 4.1494 2.4366 -0.0010 6 6 5.5103 2.4718 -0.0021 7 6 6.2605 1.2975 -0.0018 8 6 5.6511 0.0801 -0.0014 9 6 4.2476 0.0058 -0.0006 10 6 3.5838 -1.2324 0.0053 11 6 2.1933 -1.2266 0.0004 12 6 1.4434 -2.4998 0.0014 13 8 0.4161 -2.5996 0.6439 14 7 1.8980 -3.5504 -0.7099 15 6 3.0638 -3.5372 -1.6122 16 6 2.8063 -4.6940 -2.6097 17 6 2.1463 -5.7562 -1.6913 18 1 2.9044 -6.3258 -1.1538 19 7 1.2804 -6.6468 -2.4679 20 6 1.8072 -7.7543 -3.0769 21 1 2.8611 -7.9715 -2.9843 22 6 0.9867 -8.5985 -3.8123 23 7 -0.2978 -8.3342 -3.9248 24 14 1.7053 -10.1098 -4.6425 25 1 3.1623 -10.1813 -4.3646 26 1 1.0406 -11.3280 -4.1140 27 1 1.4841 -10.0216 -6.1083 28 6 1.3131 -4.8993 -0.7150 29 1 0.2771 -4.8527 -1.0505 30 6 1.3783 -5.5001 0.6905 31 1 -0.3634 -0.0990 1.0229 32 1 -0.3633 0.9354 -0.4257 33 1 -0.3634 -0.8363 -0.5972 34 1 3.5840 3.3567 -0.0015 35 1 6.0169 3.4256 -0.0029 36 1 7.3390 1.3538 -0.0022 37 1 6.2428 -0.8234 -0.0016 38 1 4.1365 -2.1602 0.0097 39 1 3.9804 -3.7175 -1.0505 40 1 3.1251 -2.5863 -2.1416 41 1 2.1237 -4.3831 -3.4008 42 1 3.7421 -5.0656 -3.0271 43 1 0.3337 -6.4519 -2.5508 44 1 -0.8712 -8.9238 -4.4390 45 1 0.7987 -4.8827 1.3768 46 1 0.9668 -6.5093 0.6737 47 1 2.4159 -5.5363 1.0224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986326178.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:43 Heat of formation + Delta-G solvation = 18.349917 kcal Electronic energy + Delta-G solvation = -29087.000089 eV Core-core repulsion = 25234.028030 eV Total energy + Delta-G solvation = -3852.972059 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.22914 -41.01716 -39.05756 -37.95252 -36.01103 -34.80625 -33.30445 -32.97215 -32.30467 -31.42196 -30.41727 -28.81808 -26.92067 -25.91687 -24.96072 -23.72690 -23.57510 -23.10181 -21.73736 -20.71109 -19.31099 -19.05142 -18.29262 -17.89710 -17.36664 -16.85812 -16.60308 -16.24149 -15.82299 -15.48655 -15.43697 -15.26075 -15.15445 -14.79573 -14.55763 -14.36793 -14.16337 -14.04192 -13.94566 -13.56779 -13.32569 -13.18058 -13.11291 -12.93671 -12.69953 -12.66441 -12.52629 -12.40993 -12.33774 -12.14813 -12.06415 -11.73318 -11.66943 -11.47878 -11.16171 -10.92025 -10.55645 -9.84598 -9.65120 -9.25473 -9.02241 -7.93182 -5.23218 -0.79121 -0.41177 0.86112 1.45842 1.50190 1.50749 1.60546 1.74894 2.06939 2.58030 3.02061 3.06974 3.25757 3.40518 3.48973 3.58112 3.70986 3.72461 3.83545 3.92464 4.06066 4.17078 4.22119 4.29949 4.33371 4.38058 4.38483 4.48885 4.52932 4.63367 4.64873 4.66513 4.70161 4.78207 4.90170 4.90212 5.03427 5.04486 5.15325 5.20691 5.21928 5.30651 5.37784 5.43793 5.45127 5.49613 5.56341 5.87857 6.26958 6.41967 6.79939 6.98583 7.33604 8.05533 8.28886 9.30604 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018227 B = 0.002598 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.854390 B =10776.161514 C =11644.495925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.190 3.810 3 N -0.499 5.499 4 C 0.122 3.878 5 C -0.124 4.124 6 C -0.076 4.076 7 C -0.119 4.119 8 C -0.086 4.086 9 C -0.130 4.130 10 C -0.001 4.001 11 C -0.198 4.198 12 C 0.577 3.423 13 O -0.563 6.563 14 N -0.601 5.601 15 C 0.102 3.898 16 C -0.148 4.148 17 C 0.173 3.827 18 H 0.077 0.923 19 N -0.730 5.730 20 C -0.232 4.232 21 H 0.086 0.914 22 C -0.077 4.077 23 N -0.972 5.972 24 Si 0.972 3.028 25 H -0.260 1.260 26 H -0.298 1.298 27 H -0.298 1.298 28 C 0.134 3.866 29 H 0.047 0.953 30 C -0.144 4.144 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.139 0.861 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.173 0.827 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.371 0.629 44 H 0.249 0.751 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.321 21.501 9.098 29.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.037 3.963 3 N -0.209 5.209 4 C 0.000 4.000 5 C -0.143 4.143 6 C -0.096 4.096 7 C -0.136 4.136 8 C -0.105 4.105 9 C -0.132 4.132 10 C -0.027 4.027 11 C -0.203 4.203 12 C 0.367 3.633 13 O -0.443 6.443 14 N -0.334 5.334 15 C -0.020 4.020 16 C -0.188 4.188 17 C 0.063 3.937 18 H 0.095 0.905 19 N -0.369 5.369 20 C -0.364 4.364 21 H 0.104 0.896 22 C -0.270 4.270 23 N -0.623 5.623 24 Si 0.802 3.198 25 H -0.184 1.184 26 H -0.226 1.226 27 H -0.225 1.225 28 C 0.030 3.970 29 H 0.065 0.935 30 C -0.202 4.202 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.157 0.843 35 H 0.180 0.820 36 H 0.181 0.819 37 H 0.179 0.821 38 H 0.190 0.810 39 H 0.122 0.878 40 H 0.102 0.898 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.202 0.798 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.506 22.209 9.428 29.233 hybrid contribution -0.661 -1.726 -0.692 1.974 sum 15.844 20.483 8.736 27.329 Atomic orbital electron populations 1.20749 0.87824 1.03173 1.03746 1.21534 0.97648 0.86765 0.90336 1.67845 1.09565 1.27842 1.15617 1.19467 0.88836 0.94739 0.96917 1.21009 0.95464 0.95712 1.02097 1.21422 0.92750 1.00699 0.94686 1.21405 1.02246 0.91505 0.98472 1.21422 0.91135 1.00654 0.97266 1.19013 0.96408 0.92821 1.04965 1.22398 0.92092 0.99165 0.89053 1.20598 0.95288 0.93639 1.10805 1.17902 0.83998 0.82569 0.78865 1.90762 1.25164 1.83566 1.44761 1.48468 1.31279 1.09400 1.44215 1.22681 0.88429 0.99880 0.91037 1.23408 1.02052 0.95663 0.97723 1.21433 0.91935 0.89754 0.90544 0.90540 1.42542 1.07711 1.26955 1.59682 1.19652 0.93964 0.99984 1.22760 0.89625 1.25579 0.95950 1.02602 1.02820 1.69841 1.04958 1.40490 1.47007 0.85089 0.78255 0.79168 0.77336 1.18359 1.22590 1.22514 1.21664 0.96916 0.81420 0.97008 0.93524 1.21941 1.02666 1.00525 0.95104 0.89671 0.89586 0.91529 0.84284 0.81994 0.81859 0.82085 0.80955 0.87775 0.89762 0.92968 0.88725 0.79758 0.94186 0.93000 0.92057 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.61 8.78 71.24 0.63 -1.98 16 2 C 0.19 5.32 6.81 43.28 0.29 5.61 16 3 N -0.50 -13.51 10.20 -175.86 -1.79 -15.30 16 4 C 0.12 2.76 6.61 40.29 0.27 3.02 16 5 C -0.12 -2.07 9.97 22.34 0.22 -1.85 16 6 C -0.08 -0.77 9.94 22.05 0.22 -0.55 16 7 C -0.12 -1.02 9.96 22.05 0.22 -0.80 16 8 C -0.09 -1.00 9.77 22.35 0.22 -0.78 16 9 C -0.13 -2.46 5.74 -21.29 -0.12 -2.58 16 10 C 0.00 -0.03 8.07 23.01 0.19 0.16 16 11 C -0.20 -5.25 5.39 -20.00 -0.11 -5.35 16 12 C 0.58 17.97 6.63 86.76 0.57 18.55 16 13 O -0.56 -21.11 14.17 -3.93 -0.06 -21.17 16 14 N -0.60 -17.49 3.06 -791.53 -2.43 -19.92 16 15 C 0.10 2.28 5.25 86.85 0.46 2.74 16 16 C -0.15 -4.37 6.77 31.98 0.22 -4.16 16 17 C 0.17 6.19 3.12 46.18 0.14 6.34 16 18 H 0.08 2.60 7.83 -2.39 -0.02 2.58 16 19 N -0.73 -34.94 5.25 -317.33 -1.67 -36.60 16 20 C -0.23 -12.08 9.98 84.03 0.84 -11.24 16 21 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 22 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 23 N -0.97 -58.90 13.06 21.65 0.28 -58.62 16 24 Si 0.97 44.69 29.55 68.60 2.03 46.72 16 25 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 28 C 0.13 4.60 3.18 45.34 0.14 4.74 16 29 H 0.05 1.92 7.69 -2.39 -0.02 1.90 16 30 C -0.14 -4.57 9.11 71.98 0.66 -3.92 16 31 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 33 H 0.07 1.96 6.73 -2.38 -0.02 1.95 16 34 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 36 H 0.16 0.32 8.06 -2.91 -0.02 0.30 16 37 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 38 H 0.17 2.39 5.95 -2.91 -0.02 2.37 16 39 H 0.10 1.60 6.98 -2.39 -0.02 1.58 16 40 H 0.08 1.71 7.31 -2.39 -0.02 1.70 16 41 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.37 19.86 7.51 -92.71 -0.70 19.17 16 44 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 45 H 0.05 1.73 7.06 -2.39 -0.02 1.72 16 46 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -72.18 381.46 2.19 -69.99 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: 0.30 Total: 30.80 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: 5.52 Total: 4.11 kcal Atomic # 7 Polarization: -124.84 SS G_CDS: -5.60 Total: -130.44 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.06 Total: -21.17 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -72.18 2.19 -69.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986326178.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.341 kcal (2) G-P(sol) polarization free energy of solvation -72.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds