Wall clock time and date at job start Tue Mar 31 2020 22:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30818 * 119.22759 * 2 1 4 4 C 1.33796 * 121.71851 * 179.97438 * 3 2 1 5 5 C 1.40530 * 120.82332 * 180.02562 * 4 3 2 6 6 C 1.36134 * 119.81562 * 179.97438 * 5 4 3 7 7 C 1.39344 * 121.09014 * 0.04669 * 6 5 4 8 8 C 1.36141 * 120.84101 * 359.97438 * 7 6 5 9 9 C 1.40551 * 119.61440 * 0.02562 * 8 7 6 10 10 C 1.40492 * 121.22271 * 180.30449 * 9 8 7 11 11 C 1.39043 * 117.96219 * 180.18536 * 10 9 8 12 12 C 1.47758 * 120.26951 * 179.78770 * 11 10 9 13 13 O 1.21571 * 120.00040 * 229.69421 * 12 11 10 14 14 N 1.34777 * 120.00417 * 49.70123 * 12 11 10 15 15 C 1.47425 * 125.64366 * 355.09381 * 14 12 11 16 16 C 1.54913 * 104.83145 * 155.90653 * 15 14 12 17 17 C 1.55156 * 101.58032 * 37.01000 * 16 15 14 18 18 H 1.09007 * 110.71963 * 83.03367 * 17 16 15 19 19 N 1.46495 * 110.72292 * 206.13197 * 17 16 15 20 20 C 1.36933 * 120.00167 * 271.16390 * 19 17 16 21 21 H 1.07997 * 120.00196 * 359.97438 * 20 19 17 22 22 C 1.38814 * 120.00305 * 179.97438 * 20 19 17 23 23 N 1.31628 * 119.99700 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00403 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47240 * 59.99871 * 24 22 20 26 26 H 1.48510 * 109.47107 * 299.99847 * 24 22 20 27 27 H 1.48497 * 109.47544 * 179.97438 * 24 22 20 28 28 C 1.47315 * 125.61889 * 175.31794 * 14 12 11 29 29 H 1.09001 * 110.06231 * 61.68077 * 28 14 12 30 30 C 1.52993 * 109.85148 * 300.42142 * 28 14 12 31 31 H 1.09003 * 109.46806 * 273.96058 * 1 2 3 32 32 H 1.08994 * 109.47286 * 33.95957 * 1 2 3 33 33 H 1.09005 * 109.47129 * 153.96636 * 1 2 3 34 34 H 1.08007 * 120.09445 * 359.94962 * 5 4 3 35 35 H 1.08003 * 119.45744 * 180.02562 * 6 5 4 36 36 H 1.08006 * 119.58113 * 179.97438 * 7 6 5 37 37 H 1.07992 * 120.19384 * 179.97438 * 8 7 6 38 38 H 1.07997 * 121.02360 * 359.94582 * 10 9 8 39 39 H 1.09005 * 110.36743 * 37.07502 * 15 14 12 40 40 H 1.09000 * 110.46186 * 274.79580 * 15 14 12 41 41 H 1.08993 * 111.00370 * 278.93938 * 16 15 14 42 42 H 1.09000 * 111.00116 * 155.08168 * 16 15 14 43 43 H 0.97005 * 120.00069 * 91.15372 * 19 17 16 44 44 H 0.97003 * 119.99821 * 359.97438 * 23 22 20 45 45 H 1.08998 * 109.46969 * 302.39589 * 30 28 14 46 46 H 1.09000 * 109.47306 * 62.39329 * 30 28 14 47 47 H 1.08997 * 109.47447 * 182.39401 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4825 1.1998 0.0005 5 6 4.1494 2.4367 0.0010 6 6 5.5103 2.4720 0.0021 7 6 6.2605 1.2977 0.0017 8 6 5.6512 0.0803 0.0007 9 6 4.2477 0.0060 -0.0004 10 6 3.5839 -1.2322 0.0050 11 6 2.1935 -1.2266 -0.0004 12 6 1.4435 -2.4997 0.0001 13 8 0.5514 -2.6800 -0.8058 14 7 1.7484 -3.4611 0.8941 15 6 2.8658 -3.4178 1.8548 16 6 2.4396 -4.3676 3.0020 17 6 1.7124 -5.4935 2.2202 18 1 2.4288 -6.2160 1.8292 19 7 0.7208 -6.1574 3.0699 20 6 1.0862 -7.2300 3.8387 21 1 2.1053 -7.5868 3.8184 22 6 0.1467 -7.8588 4.6443 23 7 -1.0953 -7.4236 4.6695 24 14 0.6449 -9.3224 5.6925 25 1 1.7126 -8.9124 6.6396 26 1 1.1511 -10.4094 4.8163 27 1 -0.5327 -9.8088 6.4553 28 6 1.0226 -4.7310 1.0694 29 1 1.0716 -5.3193 0.1531 30 6 -0.4366 -4.4495 1.4330 31 1 -0.3633 0.0710 1.0253 32 1 -0.3633 0.8523 -0.5740 33 1 -0.3634 -0.9234 -0.4511 34 1 3.5839 3.3569 0.0002 35 1 6.0169 3.4258 0.0029 36 1 7.3391 1.3541 0.0021 37 1 6.2429 -0.8232 0.0000 38 1 4.1366 -2.1600 0.0093 39 1 3.0025 -2.4045 2.2324 40 1 3.7838 -3.7749 1.3879 41 1 1.7585 -3.8675 3.6905 42 1 3.3098 -4.7577 3.5298 43 1 -0.1946 -5.8371 3.0881 44 1 -1.3539 -6.6633 4.1254 45 1 -0.4752 -3.8447 2.3390 46 1 -0.9172 -3.9111 0.6161 47 1 -0.9572 -5.3920 1.6028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986326181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:47 Heat of formation + Delta-G solvation = 44.244305 kcal Electronic energy + Delta-G solvation = -29254.642346 eV Core-core repulsion = 25402.793152 eV Total energy + Delta-G solvation = -3851.849194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.36053 -40.00131 -38.03867 -37.09138 -34.67235 -33.85223 -32.19620 -31.83438 -30.90938 -30.41457 -28.72593 -27.95224 -25.26537 -25.09353 -23.48090 -22.86898 -22.66096 -22.39753 -20.42948 -19.12737 -18.43136 -17.64747 -17.43858 -16.92252 -16.21184 -15.78475 -15.57787 -15.07195 -14.86080 -14.83351 -14.46520 -14.19687 -13.87619 -13.69475 -13.39992 -13.29668 -13.23895 -12.85810 -12.65584 -12.35890 -12.24410 -12.08911 -11.92610 -11.87505 -11.77675 -11.55993 -11.37982 -10.95024 -10.83634 -10.67397 -10.42097 -10.26809 -10.12044 -10.02210 -9.56846 -9.26396 -9.01251 -8.96924 -8.61527 -8.55821 -7.15418 -6.18656 -3.20523 -0.03548 0.37817 1.58334 2.33316 2.72262 3.00201 3.47332 3.50218 3.68097 3.75436 3.88161 4.16488 4.26291 4.38156 4.47432 4.59212 4.65495 4.76624 4.87235 4.88073 5.05833 5.12181 5.19286 5.31110 5.36801 5.44985 5.46573 5.51085 5.54906 5.56596 5.60743 5.64245 5.74915 5.84523 5.89741 5.96544 6.00528 6.04003 6.05645 6.13515 6.22845 6.35728 6.42358 6.47828 6.52804 6.60032 6.80692 7.50959 7.64938 7.71899 8.08981 8.66718 9.11247 9.97721 10.11496 11.28960 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019083 B = 0.002621 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.915929 B =10678.954491 C =11571.365707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.209 3.791 3 N -0.480 5.480 4 C 0.145 3.855 5 C -0.099 4.099 6 C -0.094 4.094 7 C -0.124 4.124 8 C -0.086 4.086 9 C -0.115 4.115 10 C -0.019 4.019 11 C -0.171 4.171 12 C 0.579 3.421 13 O -0.528 6.528 14 N -0.600 5.600 15 C 0.094 3.906 16 C -0.152 4.152 17 C 0.180 3.820 18 H 0.066 0.934 19 N -0.728 5.728 20 C -0.337 4.337 21 H 0.066 0.934 22 C -0.042 4.042 23 N -0.940 5.940 24 Si 1.080 2.920 25 H -0.295 1.295 26 H -0.294 1.294 27 H -0.285 1.285 28 C 0.127 3.873 29 H 0.076 0.924 30 C -0.159 4.159 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.146 0.854 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.374 0.626 44 H 0.255 0.745 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.039 18.263 -9.713 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.056 3.944 3 N -0.188 5.188 4 C 0.023 3.977 5 C -0.118 4.118 6 C -0.114 4.114 7 C -0.142 4.142 8 C -0.104 4.104 9 C -0.117 4.117 10 C -0.045 4.045 11 C -0.176 4.176 12 C 0.366 3.634 13 O -0.406 6.406 14 N -0.333 5.333 15 C -0.029 4.029 16 C -0.194 4.194 17 C 0.068 3.932 18 H 0.084 0.916 19 N -0.372 5.372 20 C -0.468 4.468 21 H 0.084 0.916 22 C -0.240 4.240 23 N -0.585 5.585 24 Si 0.911 3.089 25 H -0.222 1.222 26 H -0.222 1.222 27 H -0.210 1.210 28 C 0.024 3.976 29 H 0.094 0.906 30 C -0.217 4.217 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.122 0.878 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.164 0.836 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.212 0.788 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.779 17.801 -9.071 23.716 hybrid contribution 1.094 0.558 -1.005 1.587 sum 13.873 18.358 -10.077 25.120 Atomic orbital electron populations 1.21148 0.87811 1.05803 1.03769 1.21443 0.97390 0.86200 0.89400 1.67868 1.08291 1.27968 1.14712 1.18988 0.89110 0.93046 0.96521 1.20818 0.94225 0.96377 1.00369 1.20968 0.93677 0.98844 0.97866 1.20926 1.00446 0.92260 1.00545 1.21047 0.92416 0.98749 0.98234 1.18759 0.94968 0.93533 1.04428 1.21986 0.92956 0.97823 0.91752 1.20785 0.94397 0.95158 1.07306 1.17592 0.83121 0.82198 0.80453 1.90744 1.31835 1.79754 1.38304 1.48617 1.30938 1.18623 1.35104 1.22496 0.89184 1.00733 0.90485 1.23546 1.01639 0.97520 0.96662 1.21113 0.91393 0.91753 0.88964 0.91577 1.42649 1.08263 1.35979 1.50300 1.20032 0.97116 1.08027 1.21580 0.91628 1.25800 0.93935 1.03850 1.00370 1.70902 1.17308 1.27447 1.42805 0.83237 0.74965 0.74955 0.75758 1.22229 1.22184 1.21003 1.21968 0.92789 0.83231 0.99596 0.90574 1.22006 0.95416 1.02756 1.01560 0.89994 0.90001 0.87787 0.84590 0.85172 0.85331 0.84984 0.83632 0.91275 0.91460 0.90745 0.90362 0.78831 0.93381 0.92492 0.91882 0.90425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.59 9.83 36.01 0.35 -1.24 16 2 C 0.21 2.85 6.82 -82.15 -0.56 2.29 16 3 N -0.48 -6.48 10.20 -6.94 -0.07 -6.56 16 4 C 0.14 1.74 6.61 -84.79 -0.56 1.18 16 5 C -0.10 -0.94 9.97 -39.47 -0.39 -1.33 16 6 C -0.09 -0.67 9.94 -39.93 -0.40 -1.07 16 7 C -0.12 -0.86 9.96 -39.92 -0.40 -1.25 16 8 C -0.09 -0.70 9.77 -39.46 -0.39 -1.08 16 9 C -0.11 -1.25 5.74 -106.82 -0.61 -1.86 16 10 C -0.02 -0.21 8.04 -38.43 -0.31 -0.52 16 11 C -0.17 -2.30 5.17 -104.83 -0.54 -2.84 16 12 C 0.58 8.87 6.58 -12.37 -0.08 8.78 16 13 O -0.53 -9.42 13.86 5.30 0.07 -9.35 16 14 N -0.60 -8.91 3.09 -163.93 -0.51 -9.42 16 15 C 0.09 1.20 5.48 -2.53 -0.01 1.19 16 16 C -0.15 -2.42 6.77 -24.58 -0.17 -2.58 16 17 C 0.18 3.34 3.46 -66.10 -0.23 3.11 16 18 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 19 N -0.73 -17.08 4.98 -51.65 -0.26 -17.34 16 20 C -0.34 -8.97 9.97 -15.06 -0.15 -9.12 16 21 H 0.07 1.71 7.83 -52.49 -0.41 1.29 16 22 C -0.04 -1.16 5.50 -17.43 -0.10 -1.26 16 23 N -0.94 -28.23 13.70 55.49 0.76 -27.47 16 24 Si 1.08 25.07 29.92 -169.99 -5.09 19.98 16 25 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 C 0.13 2.16 3.48 -66.79 -0.23 1.93 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 30 C -0.16 -2.82 7.94 37.15 0.30 -2.52 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.10 1.45 5.31 -51.93 -0.28 1.17 16 34 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 35 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 36 H 0.13 0.56 8.06 -52.48 -0.42 0.13 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.15 1.31 6.87 -52.49 -0.36 0.95 16 39 H 0.07 0.82 7.09 -51.93 -0.37 0.45 16 40 H 0.07 0.71 7.59 -51.93 -0.39 0.31 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.37 9.07 3.82 -40.82 -0.16 8.92 16 44 H 0.25 7.53 6.77 -40.82 -0.28 7.26 16 45 H 0.06 1.02 8.06 -51.93 -0.42 0.60 16 46 H 0.06 1.10 6.93 -51.93 -0.36 0.74 16 47 H 0.08 1.49 6.72 -51.93 -0.35 1.14 16 LS Contribution 376.13 15.07 5.67 5.67 Total: -1.00 -32.51 376.13 -10.29 -42.80 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -6.39 Total: 9.88 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -4.48 Total: -8.20 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.07 Total: -60.78 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.07 Total: -9.35 kcal Atomic # 14 Polarization: 25.07 SS G_CDS: -5.09 Total: 19.98 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.51 -10.29 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986326181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.043 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds