Wall clock time and date at job start Tue Mar 31 2020 22:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30818 * 119.22759 * 2 1 4 4 C 1.33796 * 121.71851 * 179.97438 * 3 2 1 5 5 C 1.40530 * 120.82332 * 180.02562 * 4 3 2 6 6 C 1.36134 * 119.81562 * 179.97438 * 5 4 3 7 7 C 1.39344 * 121.09014 * 0.04669 * 6 5 4 8 8 C 1.36141 * 120.84101 * 359.97438 * 7 6 5 9 9 C 1.40551 * 119.61440 * 0.02562 * 8 7 6 10 10 C 1.40492 * 121.22271 * 180.30449 * 9 8 7 11 11 C 1.39043 * 117.96219 * 180.18536 * 10 9 8 12 12 C 1.47758 * 120.26951 * 179.78770 * 11 10 9 13 13 O 1.21571 * 120.00040 * 229.69421 * 12 11 10 14 14 N 1.34777 * 120.00417 * 49.70123 * 12 11 10 15 15 C 1.47425 * 125.64366 * 355.09381 * 14 12 11 16 16 C 1.54913 * 104.83145 * 155.90653 * 15 14 12 17 17 C 1.55156 * 101.58032 * 37.01000 * 16 15 14 18 18 H 1.09007 * 110.71963 * 83.03367 * 17 16 15 19 19 N 1.46495 * 110.72292 * 206.13197 * 17 16 15 20 20 C 1.36933 * 120.00167 * 271.16390 * 19 17 16 21 21 H 1.07997 * 120.00196 * 359.97438 * 20 19 17 22 22 C 1.38814 * 120.00305 * 179.97438 * 20 19 17 23 23 N 1.31628 * 119.99700 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00403 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47240 * 59.99871 * 24 22 20 26 26 H 1.48510 * 109.47107 * 299.99847 * 24 22 20 27 27 H 1.48497 * 109.47544 * 179.97438 * 24 22 20 28 28 C 1.47315 * 125.61889 * 175.31794 * 14 12 11 29 29 H 1.09001 * 110.06231 * 61.68077 * 28 14 12 30 30 C 1.52993 * 109.85148 * 300.42142 * 28 14 12 31 31 H 1.09003 * 109.46806 * 273.96058 * 1 2 3 32 32 H 1.08994 * 109.47286 * 33.95957 * 1 2 3 33 33 H 1.09005 * 109.47129 * 153.96636 * 1 2 3 34 34 H 1.08007 * 120.09445 * 359.94962 * 5 4 3 35 35 H 1.08003 * 119.45744 * 180.02562 * 6 5 4 36 36 H 1.08006 * 119.58113 * 179.97438 * 7 6 5 37 37 H 1.07992 * 120.19384 * 179.97438 * 8 7 6 38 38 H 1.07997 * 121.02360 * 359.94582 * 10 9 8 39 39 H 1.09005 * 110.36743 * 37.07502 * 15 14 12 40 40 H 1.09000 * 110.46186 * 274.79580 * 15 14 12 41 41 H 1.08993 * 111.00370 * 278.93938 * 16 15 14 42 42 H 1.09000 * 111.00116 * 155.08168 * 16 15 14 43 43 H 0.97005 * 120.00069 * 91.15372 * 19 17 16 44 44 H 0.97003 * 119.99821 * 359.97438 * 23 22 20 45 45 H 1.08998 * 109.46969 * 302.39589 * 30 28 14 46 46 H 1.09000 * 109.47306 * 62.39329 * 30 28 14 47 47 H 1.08997 * 109.47447 * 182.39401 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4825 1.1998 0.0005 5 6 4.1494 2.4367 0.0010 6 6 5.5103 2.4720 0.0021 7 6 6.2605 1.2977 0.0017 8 6 5.6512 0.0803 0.0007 9 6 4.2477 0.0060 -0.0004 10 6 3.5839 -1.2322 0.0050 11 6 2.1935 -1.2266 -0.0004 12 6 1.4435 -2.4997 0.0001 13 8 0.5514 -2.6800 -0.8058 14 7 1.7484 -3.4611 0.8941 15 6 2.8658 -3.4178 1.8548 16 6 2.4396 -4.3676 3.0020 17 6 1.7124 -5.4935 2.2202 18 1 2.4288 -6.2160 1.8292 19 7 0.7208 -6.1574 3.0699 20 6 1.0862 -7.2300 3.8387 21 1 2.1053 -7.5868 3.8184 22 6 0.1467 -7.8588 4.6443 23 7 -1.0953 -7.4236 4.6695 24 14 0.6449 -9.3224 5.6925 25 1 1.7126 -8.9124 6.6396 26 1 1.1511 -10.4094 4.8163 27 1 -0.5327 -9.8088 6.4553 28 6 1.0226 -4.7310 1.0694 29 1 1.0716 -5.3193 0.1531 30 6 -0.4366 -4.4495 1.4330 31 1 -0.3633 0.0710 1.0253 32 1 -0.3633 0.8523 -0.5740 33 1 -0.3634 -0.9234 -0.4511 34 1 3.5839 3.3569 0.0002 35 1 6.0169 3.4258 0.0029 36 1 7.3391 1.3541 0.0021 37 1 6.2429 -0.8232 0.0000 38 1 4.1366 -2.1600 0.0093 39 1 3.0025 -2.4045 2.2324 40 1 3.7838 -3.7749 1.3879 41 1 1.7585 -3.8675 3.6905 42 1 3.3098 -4.7577 3.5298 43 1 -0.1946 -5.8371 3.0881 44 1 -1.3539 -6.6633 4.1254 45 1 -0.4752 -3.8447 2.3390 46 1 -0.9172 -3.9111 0.6161 47 1 -0.9572 -5.3920 1.6028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986326181.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:46 Heat of formation + Delta-G solvation = 25.113522 kcal Electronic energy + Delta-G solvation = -29255.471919 eV Core-core repulsion = 25402.793152 eV Total energy + Delta-G solvation = -3852.678767 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.27021 -41.12620 -39.22391 -38.01707 -36.33022 -34.84174 -33.41360 -32.99361 -32.25509 -31.39193 -30.20593 -28.84282 -26.74964 -26.10311 -25.32702 -23.82999 -23.66565 -23.16917 -21.62830 -20.43495 -19.56608 -19.30692 -18.43317 -17.90512 -17.18348 -17.04345 -16.88852 -16.39486 -15.94217 -15.68299 -15.54488 -15.35773 -15.24857 -14.91862 -14.54407 -14.30874 -14.12102 -14.05006 -13.96472 -13.83718 -13.42351 -13.33170 -13.11637 -12.88685 -12.72088 -12.61690 -12.45135 -12.41606 -12.33300 -12.01558 -11.84769 -11.74951 -11.60513 -11.26241 -11.18785 -10.90727 -10.57367 -9.86753 -9.73416 -9.28381 -9.12377 -8.36475 -5.31973 -0.79790 -0.43082 0.84546 1.35610 1.60717 1.66044 1.70690 1.86419 1.98457 2.73637 2.98610 3.04322 3.19529 3.40723 3.46870 3.54597 3.59578 3.66955 3.78595 3.82170 3.96931 4.05605 4.19320 4.23365 4.25402 4.30132 4.35250 4.40631 4.48028 4.53846 4.56503 4.62356 4.65863 4.72701 4.77259 4.87069 4.92597 5.02040 5.07600 5.11661 5.14210 5.18896 5.35265 5.37395 5.41837 5.47046 5.63372 5.85347 6.33686 6.50941 6.76689 6.90264 7.09251 7.99482 8.10955 9.14789 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019083 B = 0.002621 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.915929 B =10678.954491 C =11571.365707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.190 3.810 3 N -0.498 5.498 4 C 0.120 3.880 5 C -0.124 4.124 6 C -0.077 4.077 7 C -0.118 4.118 8 C -0.088 4.088 9 C -0.128 4.128 10 C -0.004 4.004 11 C -0.195 4.195 12 C 0.583 3.417 13 O -0.562 6.562 14 N -0.599 5.599 15 C 0.103 3.897 16 C -0.143 4.143 17 C 0.173 3.827 18 H 0.071 0.929 19 N -0.743 5.743 20 C -0.326 4.326 21 H 0.074 0.926 22 C -0.106 4.106 23 N -0.978 5.978 24 Si 1.127 2.873 25 H -0.276 1.276 26 H -0.277 1.277 27 H -0.299 1.299 28 C 0.135 3.865 29 H 0.073 0.927 30 C -0.147 4.147 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.139 0.861 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.052 0.948 42 H 0.091 0.909 43 H 0.367 0.633 44 H 0.242 0.758 45 H 0.048 0.952 46 H 0.062 0.938 47 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.683 19.346 -9.946 28.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.036 3.964 3 N -0.208 5.208 4 C -0.001 4.001 5 C -0.142 4.142 6 C -0.096 4.096 7 C -0.135 4.135 8 C -0.106 4.106 9 C -0.130 4.130 10 C -0.030 4.030 11 C -0.201 4.201 12 C 0.372 3.628 13 O -0.442 6.442 14 N -0.331 5.331 15 C -0.019 4.019 16 C -0.184 4.184 17 C 0.063 3.937 18 H 0.089 0.911 19 N -0.387 5.387 20 C -0.458 4.458 21 H 0.092 0.908 22 C -0.297 4.297 23 N -0.626 5.626 24 Si 0.952 3.048 25 H -0.202 1.202 26 H -0.204 1.204 27 H -0.225 1.225 28 C 0.031 3.969 29 H 0.091 0.909 30 C -0.205 4.205 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.157 0.843 35 H 0.180 0.820 36 H 0.182 0.818 37 H 0.179 0.821 38 H 0.189 0.811 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.071 0.929 42 H 0.109 0.891 43 H 0.203 0.797 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.494 18.925 -9.332 27.409 hybrid contribution -0.158 0.402 -1.015 1.103 sum 17.335 19.327 -10.348 27.948 Atomic orbital electron populations 1.21052 0.88066 1.05071 1.03839 1.21487 0.97600 0.86675 0.90594 1.67838 1.09588 1.27877 1.15455 1.19458 0.88819 0.94740 0.97111 1.21014 0.95479 0.95709 1.02014 1.21422 0.92739 1.00709 0.94755 1.21410 1.02258 0.91492 0.98358 1.21412 0.91132 1.00640 0.97413 1.18994 0.96397 0.92799 1.04826 1.22262 0.91943 0.99116 0.89644 1.20563 0.95369 0.93647 1.10484 1.17881 0.82657 0.82565 0.79716 1.90722 1.33376 1.80350 1.39712 1.48579 1.31314 1.17720 1.35506 1.22614 0.89425 1.00965 0.88926 1.23348 1.01173 0.96776 0.97114 1.21314 0.90740 0.92521 0.89163 0.91108 1.42836 1.08998 1.35969 1.50924 1.20394 0.97156 1.07832 1.20389 0.90828 1.27156 0.93680 1.06502 1.02319 1.71007 1.18848 1.28297 1.44443 0.82629 0.74636 0.72685 0.74832 1.20179 1.20351 1.22499 1.21703 0.92145 0.84310 0.98770 0.90889 1.21847 0.96256 1.01387 1.01035 0.89781 0.89269 0.89616 0.84288 0.81964 0.81828 0.82146 0.81133 0.89694 0.87833 0.92946 0.89077 0.79730 0.94720 0.93332 0.91943 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.25 9.83 71.24 0.70 -2.55 16 2 C 0.19 5.29 6.82 43.28 0.29 5.58 16 3 N -0.50 -13.56 10.20 -175.86 -1.79 -15.36 16 4 C 0.12 2.74 6.61 40.28 0.27 3.01 16 5 C -0.12 -2.09 9.97 22.34 0.22 -1.87 16 6 C -0.08 -0.79 9.94 22.05 0.22 -0.57 16 7 C -0.12 -1.03 9.96 22.05 0.22 -0.81 16 8 C -0.09 -1.03 9.77 22.35 0.22 -0.81 16 9 C -0.13 -2.45 5.74 -21.29 -0.12 -2.57 16 10 C 0.00 -0.08 8.04 23.01 0.19 0.11 16 11 C -0.20 -5.15 5.17 -20.00 -0.10 -5.26 16 12 C 0.58 17.84 6.58 86.76 0.57 18.41 16 13 O -0.56 -20.68 13.86 -3.94 -0.05 -20.73 16 14 N -0.60 -17.29 3.09 -790.81 -2.44 -19.73 16 15 C 0.10 2.34 5.48 86.86 0.48 2.82 16 16 C -0.14 -4.33 6.77 31.99 0.22 -4.11 16 17 C 0.17 6.32 3.46 46.18 0.16 6.48 16 18 H 0.07 2.54 8.11 -2.38 -0.02 2.52 16 19 N -0.74 -35.49 4.98 -317.33 -1.58 -37.07 16 20 C -0.33 -17.39 9.97 84.03 0.84 -16.55 16 21 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 22 C -0.11 -5.96 5.50 84.86 0.47 -5.49 16 23 N -0.98 -60.53 13.70 21.65 0.30 -60.23 16 24 Si 1.13 50.53 29.92 68.60 2.05 52.58 16 25 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 26 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 28 C 0.13 4.60 3.48 45.28 0.16 4.76 16 29 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 30 C -0.15 -5.47 7.94 71.98 0.57 -4.90 16 31 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 2.57 5.31 -2.38 -0.01 2.56 16 34 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 36 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 37 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 38 H 0.17 2.37 6.87 -2.91 -0.02 2.34 16 39 H 0.08 1.75 7.09 -2.38 -0.02 1.73 16 40 H 0.10 1.69 7.59 -2.39 -0.02 1.68 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.37 18.56 3.82 -92.70 -0.35 18.21 16 44 H 0.24 15.02 6.77 -92.71 -0.63 14.39 16 45 H 0.05 1.85 8.06 -2.39 -0.02 1.83 16 46 H 0.06 2.30 6.93 -2.39 -0.02 2.28 16 47 H 0.06 2.36 6.72 -2.39 -0.02 2.34 16 Total: -1.00 -73.91 376.13 2.82 -71.09 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.79 Total: 33.79 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 5.56 Total: -4.33 kcal Atomic # 7 Polarization: -126.87 SS G_CDS: -5.52 Total: -132.39 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.05 Total: -20.73 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Total: -73.91 2.82 -71.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986326181.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.199 kcal (2) G-P(sol) polarization free energy of solvation -73.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds