Wall clock time and date at job start Tue Mar 31 2020 22:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30821 * 119.23110 * 2 1 4 4 C 1.33792 * 121.71697 * 180.28841 * 3 2 1 5 5 C 1.40534 * 120.81256 * 179.74354 * 4 3 2 6 6 C 1.36135 * 119.81192 * 180.02562 * 5 4 3 7 7 C 1.39342 * 121.08868 * 359.95643 * 6 5 4 8 8 C 1.36133 * 120.84408 * 359.97438 * 7 6 5 9 9 C 1.40553 * 119.62030 * 0.02562 * 8 7 6 10 10 C 1.40498 * 121.23879 * 179.97438 * 9 8 7 11 11 C 1.39046 * 117.96207 * 180.02562 * 10 9 8 12 12 C 1.47751 * 120.26720 * 180.02562 * 11 10 9 13 13 O 1.21563 * 120.00560 * 130.26788 * 12 11 10 14 14 N 1.34778 * 119.99626 * 310.27458 * 12 11 10 15 15 C 1.47424 * 125.65286 * 354.71724 * 14 12 11 16 16 C 1.54907 * 104.83353 * 155.92044 * 15 14 12 17 17 C 1.55153 * 101.58396 * 37.00994 * 16 15 14 18 18 H 1.09003 * 110.71633 * 82.86243 * 17 16 15 19 19 N 1.46495 * 110.72247 * 206.13450 * 17 16 15 20 20 C 1.36938 * 120.00361 * 268.52126 * 19 17 16 21 21 H 1.07999 * 119.99688 * 0.02562 * 20 19 17 22 22 C 1.38809 * 120.00482 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00233 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99735 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47241 * 90.00160 * 24 22 20 26 26 H 1.48506 * 109.47023 * 210.00057 * 24 22 20 27 27 H 1.48496 * 109.47167 * 329.99818 * 24 22 20 28 28 C 1.47027 * 125.64567 * 174.77488 * 14 12 11 29 29 H 1.09003 * 110.01398 * 300.50036 * 28 14 12 30 30 C 1.53000 * 109.88293 * 61.59682 * 28 14 12 31 31 H 1.09005 * 109.46965 * 274.47855 * 1 2 3 32 32 H 1.09003 * 109.47018 * 34.47502 * 1 2 3 33 33 H 1.08996 * 109.47433 * 154.48095 * 1 2 3 34 34 H 1.08002 * 120.09694 * 0.02702 * 5 4 3 35 35 H 1.07998 * 119.45516 * 179.97438 * 6 5 4 36 36 H 1.08004 * 119.57958 * 180.02562 * 7 6 5 37 37 H 1.07999 * 120.19372 * 180.02562 * 8 7 6 38 38 H 1.07993 * 121.01612 * 0.02562 * 10 9 8 39 39 H 1.09006 * 110.36130 * 37.08604 * 15 14 12 40 40 H 1.08996 * 110.36895 * 274.75978 * 15 14 12 41 41 H 1.09007 * 111.00223 * 278.93488 * 16 15 14 42 42 H 1.08993 * 111.03938 * 155.10180 * 16 15 14 43 43 H 0.97003 * 120.00186 * 88.52447 * 19 17 16 44 44 H 0.96997 * 120.00153 * 179.97438 * 23 22 20 45 45 H 1.09006 * 109.47090 * 177.80815 * 30 28 14 46 46 H 1.09000 * 109.47095 * 297.80731 * 30 28 14 47 47 H 1.09001 * 109.47545 * 57.80783 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4825 1.1997 -0.0057 5 6 4.1493 2.4367 -0.0110 6 6 5.5102 2.4720 -0.0173 7 6 6.2604 1.2978 -0.0178 8 6 5.6513 0.0804 -0.0113 9 6 4.2477 0.0059 -0.0047 10 6 3.5838 -1.2324 0.0015 11 6 2.1934 -1.2266 0.0073 12 6 1.4434 -2.4996 0.0145 13 8 0.5519 -2.6754 0.8221 14 7 1.7478 -3.4660 -0.8742 15 6 2.7236 -3.3468 -1.9728 16 6 3.1588 -4.8022 -2.2764 17 6 1.8279 -5.5737 -2.0749 18 1 1.2119 -5.5210 -2.9727 19 7 2.0875 -6.9669 -1.7039 20 6 2.1819 -7.9280 -2.6748 21 1 2.0653 -7.6587 -3.7142 22 6 2.4283 -9.2480 -2.3233 23 7 2.5195 -10.1716 -3.2566 24 14 2.6306 -9.7136 -0.5255 25 1 1.3068 -10.0689 0.0457 26 1 3.5458 -10.8780 -0.4157 27 1 3.2001 -8.5641 0.2224 28 6 1.1606 -4.8135 -0.9094 29 1 1.3559 -5.3302 0.0303 30 6 -0.3479 -4.7178 -1.1466 31 1 -0.3633 0.0803 1.0246 32 1 -0.3633 0.8472 -0.5817 33 1 -0.3634 -0.9274 -0.4427 34 1 3.5838 3.3568 -0.0101 35 1 6.0167 3.4258 -0.0218 36 1 7.3389 1.3542 -0.0224 37 1 6.2430 -0.8231 -0.0113 38 1 4.1365 -2.1601 0.0017 39 1 3.5809 -2.7528 -1.6558 40 1 2.2550 -2.9002 -2.8497 41 1 3.9166 -5.1390 -1.5689 42 1 3.5148 -4.8983 -3.3020 43 1 2.1925 -7.2088 -0.7704 44 1 2.6921 -11.0939 -3.0109 45 1 -0.7700 -5.7207 -1.2103 46 1 -0.8122 -4.1799 -0.3200 47 1 -0.5361 -4.1845 -2.0784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986326182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:51 Heat of formation + Delta-G solvation = 41.529067 kcal Electronic energy + Delta-G solvation = -29178.127781 eV Core-core repulsion = 25326.160845 eV Total energy + Delta-G solvation = -3851.966936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.37935 -39.99529 -37.99529 -37.09246 -34.50954 -33.83917 -32.25252 -31.81397 -31.12578 -30.51657 -29.43983 -28.05218 -25.50734 -25.04301 -23.06942 -22.79525 -22.61241 -22.31283 -20.50561 -19.69100 -18.39145 -17.69446 -17.47935 -16.87037 -16.33771 -16.00685 -15.29811 -15.03753 -14.87690 -14.55829 -14.43761 -14.15184 -13.88127 -13.76948 -13.43942 -13.24407 -13.17964 -12.94466 -12.76704 -12.46472 -12.23267 -12.08804 -12.05947 -11.90400 -11.77454 -11.62977 -11.39243 -11.29483 -10.97220 -10.81936 -10.70094 -10.42601 -10.20194 -10.09347 -9.69825 -9.59603 -9.04726 -8.99125 -8.64059 -8.53581 -7.40691 -5.87049 -3.24808 -0.05389 0.36501 1.56606 2.32387 2.73695 2.96763 3.31474 3.34897 3.40378 3.73824 3.84566 4.15852 4.26489 4.36336 4.47105 4.50272 4.61875 4.76137 4.83196 4.87261 5.01820 5.05416 5.10240 5.28956 5.32635 5.43967 5.45688 5.49307 5.50041 5.52134 5.56712 5.60186 5.70632 5.74251 5.82191 5.89944 5.94749 5.96391 6.05296 6.11957 6.18247 6.27177 6.43262 6.45412 6.47823 6.54226 6.71289 7.48983 7.61964 7.86365 8.07623 8.31210 9.07545 9.80071 9.97930 11.30576 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.002828 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.054134 B = 9898.010992 C =10891.492943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.206 3.794 3 N -0.480 5.480 4 C 0.145 3.855 5 C -0.100 4.100 6 C -0.093 4.093 7 C -0.123 4.123 8 C -0.085 4.085 9 C -0.114 4.114 10 C -0.018 4.018 11 C -0.172 4.172 12 C 0.578 3.422 13 O -0.527 6.527 14 N -0.602 5.602 15 C 0.092 3.908 16 C -0.155 4.155 17 C 0.182 3.818 18 H 0.078 0.922 19 N -0.738 5.738 20 C -0.249 4.249 21 H 0.093 0.907 22 C 0.010 3.990 23 N -0.929 5.929 24 Si 0.882 3.118 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.277 1.277 28 C 0.124 3.876 29 H 0.076 0.924 30 C -0.157 4.157 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.136 0.864 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.148 0.852 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.363 0.637 44 H 0.261 0.739 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 25.404 5.428 26.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.052 3.948 3 N -0.188 5.188 4 C 0.024 3.976 5 C -0.119 4.119 6 C -0.113 4.113 7 C -0.141 4.141 8 C -0.104 4.104 9 C -0.116 4.116 10 C -0.044 4.044 11 C -0.177 4.177 12 C 0.365 3.635 13 O -0.404 6.404 14 N -0.336 5.336 15 C -0.031 4.031 16 C -0.197 4.197 17 C 0.071 3.929 18 H 0.096 0.904 19 N -0.379 5.379 20 C -0.379 4.379 21 H 0.110 0.890 22 C -0.187 4.187 23 N -0.576 5.576 24 Si 0.712 3.288 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.203 1.203 28 C 0.020 3.980 29 H 0.094 0.906 30 C -0.215 4.215 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.154 0.846 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.166 0.834 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.196 0.804 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.785 26.026 5.683 26.907 hybrid contribution 0.934 -1.271 1.230 2.000 sum 4.719 24.755 6.913 26.132 Atomic orbital electron populations 1.20849 0.87723 1.03707 1.04098 1.21442 0.97311 0.86285 0.89721 1.67838 1.08320 1.27941 1.14740 1.18972 0.89061 0.93031 0.96553 1.20811 0.94217 0.96351 1.00485 1.20974 0.93685 0.98848 0.97769 1.20933 1.00496 0.92243 1.00473 1.21071 0.92440 0.98818 0.98077 1.18766 0.94977 0.93513 1.04379 1.22002 0.93011 0.97832 0.91579 1.20801 0.94360 0.95079 1.07438 1.17582 0.82998 0.82249 0.80661 1.90791 1.30676 1.80069 1.38847 1.48495 1.41722 1.13495 1.29839 1.22582 0.91682 0.99496 0.89372 1.23553 1.00972 0.92309 1.02816 1.21220 0.92856 0.84292 0.94568 0.90409 1.42696 1.86664 1.02726 1.05822 1.19022 1.42248 0.86998 0.89616 0.88968 1.24662 1.01432 0.95703 0.96870 1.69692 1.55357 1.01280 1.31289 0.86597 0.77982 0.77905 0.86291 1.20880 1.21631 1.20332 1.22025 0.94019 0.81300 1.00625 0.90627 1.22080 0.94727 1.02809 1.01864 0.89315 0.90258 0.90088 0.84591 0.85163 0.85296 0.84914 0.83417 0.91136 0.91260 0.90723 0.89900 0.80359 0.92891 0.91010 0.91620 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.31 36.01 0.34 -0.86 16 2 C 0.21 2.63 6.82 -82.15 -0.56 2.07 16 3 N -0.48 -6.14 10.20 -6.94 -0.07 -6.21 16 4 C 0.15 1.69 6.61 -84.79 -0.56 1.13 16 5 C -0.10 -0.91 9.97 -39.47 -0.39 -1.30 16 6 C -0.09 -0.65 9.94 -39.93 -0.40 -1.05 16 7 C -0.12 -0.85 9.96 -39.93 -0.40 -1.25 16 8 C -0.09 -0.70 9.77 -39.47 -0.39 -1.09 16 9 C -0.11 -1.22 5.74 -106.81 -0.61 -1.83 16 10 C -0.02 -0.20 7.83 -38.43 -0.30 -0.50 16 11 C -0.17 -2.21 5.29 -104.84 -0.55 -2.76 16 12 C 0.58 8.49 6.19 -12.37 -0.08 8.41 16 13 O -0.53 -9.06 14.51 5.31 0.08 -8.98 16 14 N -0.60 -8.51 3.07 -164.15 -0.50 -9.02 16 15 C 0.09 1.11 6.65 -2.53 -0.02 1.10 16 16 C -0.16 -2.28 6.77 -24.59 -0.17 -2.45 16 17 C 0.18 3.18 3.14 -66.10 -0.21 2.97 16 18 H 0.08 1.39 7.80 -51.93 -0.41 0.99 16 19 N -0.74 -16.20 5.03 -51.65 -0.26 -16.46 16 20 C -0.25 -6.59 10.44 -15.06 -0.16 -6.75 16 21 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 22 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 23 N -0.93 -28.15 13.97 55.49 0.78 -27.37 16 24 Si 0.88 21.37 27.74 -169.99 -4.71 16.65 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 28 C 0.12 1.98 3.24 -66.95 -0.22 1.76 16 29 H 0.08 1.32 7.71 -51.93 -0.40 0.92 16 30 C -0.16 -2.38 9.09 37.16 0.34 -2.05 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.97 6.44 -51.93 -0.33 0.63 16 34 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 36 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.15 1.40 6.99 -52.49 -0.37 1.03 16 39 H 0.07 0.73 5.03 -51.93 -0.26 0.47 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.36 8.00 5.42 -40.82 -0.22 7.78 16 44 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.06 1.03 6.75 -51.93 -0.35 0.68 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 379.23 15.07 5.71 5.71 Total: -1.00 -32.14 379.23 -9.99 -42.13 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -6.58 Total: 7.83 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -4.43 Total: -4.28 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.06 Total: -59.06 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.08 Total: -8.98 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.71 Total: 16.65 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.14 -9.99 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986326182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.658 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.129 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds