Wall clock time and date at job start Tue Mar 31 2020 22:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30821 * 119.23110 * 2 1 4 4 C 1.33792 * 121.71697 * 180.28841 * 3 2 1 5 5 C 1.40534 * 120.81256 * 179.74354 * 4 3 2 6 6 C 1.36135 * 119.81192 * 180.02562 * 5 4 3 7 7 C 1.39342 * 121.08868 * 359.95643 * 6 5 4 8 8 C 1.36133 * 120.84408 * 359.97438 * 7 6 5 9 9 C 1.40553 * 119.62030 * 0.02562 * 8 7 6 10 10 C 1.40498 * 121.23879 * 179.97438 * 9 8 7 11 11 C 1.39046 * 117.96207 * 180.02562 * 10 9 8 12 12 C 1.47751 * 120.26720 * 180.02562 * 11 10 9 13 13 O 1.21563 * 120.00560 * 130.26788 * 12 11 10 14 14 N 1.34778 * 119.99626 * 310.27458 * 12 11 10 15 15 C 1.47424 * 125.65286 * 354.71724 * 14 12 11 16 16 C 1.54907 * 104.83353 * 155.92044 * 15 14 12 17 17 C 1.55153 * 101.58396 * 37.00994 * 16 15 14 18 18 H 1.09003 * 110.71633 * 82.86243 * 17 16 15 19 19 N 1.46495 * 110.72247 * 206.13450 * 17 16 15 20 20 C 1.36938 * 120.00361 * 268.52126 * 19 17 16 21 21 H 1.07999 * 119.99688 * 0.02562 * 20 19 17 22 22 C 1.38809 * 120.00482 * 179.97438 * 20 19 17 23 23 N 1.31621 * 120.00233 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99735 * 0.02562 * 22 20 19 25 25 H 1.48493 * 109.47241 * 90.00160 * 24 22 20 26 26 H 1.48506 * 109.47023 * 210.00057 * 24 22 20 27 27 H 1.48496 * 109.47167 * 329.99818 * 24 22 20 28 28 C 1.47027 * 125.64567 * 174.77488 * 14 12 11 29 29 H 1.09003 * 110.01398 * 300.50036 * 28 14 12 30 30 C 1.53000 * 109.88293 * 61.59682 * 28 14 12 31 31 H 1.09005 * 109.46965 * 274.47855 * 1 2 3 32 32 H 1.09003 * 109.47018 * 34.47502 * 1 2 3 33 33 H 1.08996 * 109.47433 * 154.48095 * 1 2 3 34 34 H 1.08002 * 120.09694 * 0.02702 * 5 4 3 35 35 H 1.07998 * 119.45516 * 179.97438 * 6 5 4 36 36 H 1.08004 * 119.57958 * 180.02562 * 7 6 5 37 37 H 1.07999 * 120.19372 * 180.02562 * 8 7 6 38 38 H 1.07993 * 121.01612 * 0.02562 * 10 9 8 39 39 H 1.09006 * 110.36130 * 37.08604 * 15 14 12 40 40 H 1.08996 * 110.36895 * 274.75978 * 15 14 12 41 41 H 1.09007 * 111.00223 * 278.93488 * 16 15 14 42 42 H 1.08993 * 111.03938 * 155.10180 * 16 15 14 43 43 H 0.97003 * 120.00186 * 88.52447 * 19 17 16 44 44 H 0.96997 * 120.00153 * 179.97438 * 23 22 20 45 45 H 1.09006 * 109.47090 * 177.80815 * 30 28 14 46 46 H 1.09000 * 109.47095 * 297.80731 * 30 28 14 47 47 H 1.09001 * 109.47545 * 57.80783 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4825 1.1997 -0.0057 5 6 4.1493 2.4367 -0.0110 6 6 5.5102 2.4720 -0.0173 7 6 6.2604 1.2978 -0.0178 8 6 5.6513 0.0804 -0.0113 9 6 4.2477 0.0059 -0.0047 10 6 3.5838 -1.2324 0.0015 11 6 2.1934 -1.2266 0.0073 12 6 1.4434 -2.4996 0.0145 13 8 0.5519 -2.6754 0.8221 14 7 1.7478 -3.4660 -0.8742 15 6 2.7236 -3.3468 -1.9728 16 6 3.1588 -4.8022 -2.2764 17 6 1.8279 -5.5737 -2.0749 18 1 1.2119 -5.5210 -2.9727 19 7 2.0875 -6.9669 -1.7039 20 6 2.1819 -7.9280 -2.6748 21 1 2.0653 -7.6587 -3.7142 22 6 2.4283 -9.2480 -2.3233 23 7 2.5195 -10.1716 -3.2566 24 14 2.6306 -9.7136 -0.5255 25 1 1.3068 -10.0689 0.0457 26 1 3.5458 -10.8780 -0.4157 27 1 3.2001 -8.5641 0.2224 28 6 1.1606 -4.8135 -0.9094 29 1 1.3559 -5.3302 0.0303 30 6 -0.3479 -4.7178 -1.1466 31 1 -0.3633 0.0803 1.0246 32 1 -0.3633 0.8472 -0.5817 33 1 -0.3634 -0.9274 -0.4427 34 1 3.5838 3.3568 -0.0101 35 1 6.0167 3.4258 -0.0218 36 1 7.3389 1.3542 -0.0224 37 1 6.2430 -0.8231 -0.0113 38 1 4.1365 -2.1601 0.0017 39 1 3.5809 -2.7528 -1.6558 40 1 2.2550 -2.9002 -2.8497 41 1 3.9166 -5.1390 -1.5689 42 1 3.5148 -4.8983 -3.3020 43 1 2.1925 -7.2088 -0.7704 44 1 2.6921 -11.0939 -3.0109 45 1 -0.7700 -5.7207 -1.2103 46 1 -0.8122 -4.1799 -0.3200 47 1 -0.5361 -4.1845 -2.0784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986326182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:50 Heat of formation + Delta-G solvation = 22.313880 kcal Electronic energy + Delta-G solvation = -29178.961014 eV Core-core repulsion = 25326.160845 eV Total energy + Delta-G solvation = -3852.800169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.24674 -41.06236 -39.10344 -37.99813 -36.10452 -34.82255 -33.52832 -33.01624 -32.35525 -31.63251 -30.64322 -28.84410 -26.98777 -25.94430 -24.60785 -23.79786 -23.56986 -23.11380 -21.88650 -20.86266 -19.57818 -19.20723 -18.40689 -17.88164 -17.40164 -16.92770 -16.46116 -16.26789 -15.84600 -15.72810 -15.56099 -15.39493 -14.96424 -14.74864 -14.63095 -14.52434 -14.08247 -14.03801 -14.02822 -13.74959 -13.44211 -13.37191 -13.14513 -13.02109 -12.74708 -12.69801 -12.56819 -12.42504 -12.34487 -12.16918 -12.08203 -11.82375 -11.68801 -11.50876 -11.21079 -10.96523 -10.56111 -9.85662 -9.68662 -9.33601 -9.26201 -8.01926 -5.36302 -0.80339 -0.40968 0.84196 1.38635 1.40973 1.41054 1.47267 1.70343 1.99465 2.48006 2.99259 3.05563 3.22169 3.30586 3.49064 3.49207 3.55325 3.63839 3.79051 3.86683 3.99949 4.11498 4.21016 4.27655 4.31440 4.32535 4.36358 4.41977 4.49366 4.62688 4.65070 4.65582 4.68781 4.76102 4.85137 4.89461 5.00471 5.02529 5.12827 5.19445 5.22402 5.28396 5.36037 5.37302 5.42593 5.47786 5.77615 5.85685 6.21423 6.37426 6.77906 6.93910 7.06004 7.80375 7.98282 9.18942 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016623 B = 0.002828 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.054134 B = 9898.010992 C =10891.492943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.190 3.810 3 N -0.495 5.495 4 C 0.122 3.878 5 C -0.121 4.121 6 C -0.077 4.077 7 C -0.117 4.117 8 C -0.092 4.092 9 C -0.127 4.127 10 C -0.009 4.009 11 C -0.192 4.192 12 C 0.582 3.418 13 O -0.558 6.558 14 N -0.601 5.601 15 C 0.100 3.900 16 C -0.146 4.146 17 C 0.174 3.826 18 H 0.073 0.927 19 N -0.742 5.742 20 C -0.224 4.224 21 H 0.066 0.934 22 C -0.058 4.058 23 N -0.980 5.980 24 Si 0.946 3.054 25 H -0.283 1.283 26 H -0.297 1.297 27 H -0.254 1.254 28 C 0.131 3.869 29 H 0.062 0.938 30 C -0.149 4.149 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.142 0.858 35 H 0.163 0.837 36 H 0.162 0.838 37 H 0.155 0.845 38 H 0.164 0.836 39 H 0.096 0.904 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.364 0.636 44 H 0.257 0.743 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.152 28.077 6.335 29.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.037 3.963 3 N -0.205 5.205 4 C 0.001 3.999 5 C -0.139 4.139 6 C -0.097 4.097 7 C -0.135 4.135 8 C -0.110 4.110 9 C -0.129 4.129 10 C -0.035 4.035 11 C -0.197 4.197 12 C 0.371 3.629 13 O -0.438 6.438 14 N -0.333 5.333 15 C -0.022 4.022 16 C -0.187 4.187 17 C 0.065 3.935 18 H 0.091 0.909 19 N -0.384 5.384 20 C -0.355 4.355 21 H 0.084 0.916 22 C -0.249 4.249 23 N -0.631 5.631 24 Si 0.774 3.226 25 H -0.209 1.209 26 H -0.224 1.224 27 H -0.178 1.178 28 C 0.026 3.974 29 H 0.080 0.920 30 C -0.208 4.208 31 H 0.104 0.896 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.160 0.840 35 H 0.181 0.819 36 H 0.179 0.821 37 H 0.173 0.827 38 H 0.182 0.818 39 H 0.114 0.886 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.198 0.802 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.263 28.780 6.597 30.183 hybrid contribution 0.269 -1.891 0.890 2.108 sum 6.532 26.889 7.487 28.666 Atomic orbital electron populations 1.20787 0.87454 1.03572 1.04016 1.21556 0.97756 0.86492 0.90519 1.67831 1.09365 1.27895 1.15365 1.19418 0.88883 0.94518 0.97075 1.21024 0.95366 0.95781 1.01761 1.21414 0.92864 1.00553 0.94870 1.21388 1.02204 0.91546 0.98342 1.21384 0.91364 1.00516 0.97740 1.18968 0.96242 0.92890 1.04806 1.22193 0.92290 0.98822 0.90200 1.20605 0.95050 0.93879 1.10145 1.17834 0.82547 0.82632 0.79879 1.90768 1.32195 1.80729 1.40064 1.48465 1.41911 1.12639 1.30318 1.22639 0.92198 0.98047 0.89332 1.23378 0.98892 0.93316 1.03086 1.21387 0.94657 0.82555 0.94910 0.90937 1.42662 1.86925 1.03851 1.04968 1.18977 1.39376 0.87763 0.89389 0.91623 1.25381 1.02690 0.95888 1.00984 1.69855 1.58119 1.01526 1.33554 0.85551 0.77670 0.77874 0.81505 1.20912 1.22408 1.17837 1.21758 0.94272 0.82210 0.99119 0.91984 1.22000 0.94259 1.02342 1.02159 0.89612 0.89069 0.91187 0.83992 0.81931 0.82069 0.82718 0.81820 0.88606 0.89842 0.91014 0.89455 0.80208 0.93367 0.91822 0.92155 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.30 9.31 71.24 0.66 -1.64 16 2 C 0.19 4.82 6.82 43.28 0.29 5.12 16 3 N -0.50 -12.46 10.20 -175.86 -1.79 -14.25 16 4 C 0.12 2.66 6.61 40.29 0.27 2.93 16 5 C -0.12 -1.92 9.97 22.34 0.22 -1.70 16 6 C -0.08 -0.77 9.94 22.05 0.22 -0.56 16 7 C -0.12 -1.08 9.96 22.05 0.22 -0.86 16 8 C -0.09 -1.16 9.77 22.34 0.22 -0.94 16 9 C -0.13 -2.42 5.74 -21.28 -0.12 -2.54 16 10 C -0.01 -0.19 7.83 23.02 0.18 0.00 16 11 C -0.19 -4.77 5.29 -20.00 -0.11 -4.88 16 12 C 0.58 16.76 6.19 86.76 0.54 17.29 16 13 O -0.56 -19.36 14.51 -3.91 -0.06 -19.41 16 14 N -0.60 -16.23 3.07 -791.51 -2.43 -18.66 16 15 C 0.10 2.19 6.65 86.85 0.58 2.77 16 16 C -0.15 -4.02 6.77 31.98 0.22 -3.81 16 17 C 0.17 5.95 3.14 46.18 0.14 6.10 16 18 H 0.07 2.57 7.80 -2.39 -0.02 2.55 16 19 N -0.74 -32.17 5.03 -317.34 -1.60 -33.76 16 20 C -0.22 -11.97 10.44 84.03 0.88 -11.09 16 21 H 0.07 3.81 8.06 -2.91 -0.02 3.78 16 22 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 23 N -0.98 -60.92 13.97 21.65 0.30 -60.62 16 24 Si 0.95 44.35 27.74 68.60 1.90 46.25 16 25 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 26 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 27 H -0.25 -10.75 6.52 99.48 0.65 -10.10 16 28 C 0.13 4.08 3.24 45.34 0.15 4.23 16 29 H 0.06 2.13 7.71 -2.39 -0.02 2.11 16 30 C -0.15 -4.53 9.09 71.98 0.65 -3.87 16 31 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.71 6.44 -2.39 -0.02 1.70 16 34 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 36 H 0.16 0.49 8.06 -2.91 -0.02 0.46 16 37 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.16 2.61 6.99 -2.91 -0.02 2.59 16 39 H 0.10 1.67 5.03 -2.38 -0.01 1.66 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 42 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.36 15.62 5.42 -92.71 -0.50 15.11 16 44 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 45 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 46 H 0.06 1.90 6.75 -2.39 -0.02 1.88 16 47 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -71.67 379.23 2.45 -69.23 By element: Atomic # 1 Polarization: 27.04 SS G_CDS: 0.43 Total: 27.47 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 5.68 Total: 3.75 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -5.51 Total: -127.28 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.06 Total: -19.41 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.90 Total: 46.25 kcal Total: -71.67 2.45 -69.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986326182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.543 kcal (2) G-P(sol) polarization free energy of solvation -71.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds