Wall clock time and date at job start Tue Mar 31 2020 22:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39227 * 119.15729 * 2 1 4 4 C 1.36633 * 119.90410 * 179.57555 * 3 2 1 5 5 C 1.40798 * 118.15781 * 0.64803 * 4 3 2 6 6 C 1.40477 * 121.27128 * 179.29430 * 5 4 3 7 7 C 1.36306 * 120.08574 * 180.02562 * 6 5 4 8 8 C 1.38904 * 121.06367 * 0.02562 * 7 6 5 9 9 C 1.38711 * 120.72417 * 359.97438 * 8 7 6 10 10 C 1.47439 * 120.33469 * 179.97438 * 9 8 7 11 11 O 1.21592 * 119.99932 * 171.64109 * 10 9 8 12 12 N 1.34780 * 119.99839 * 351.64181 * 10 9 8 13 13 C 1.47421 * 125.64756 * 181.09144 * 12 10 9 14 14 C 1.55126 * 104.94498 * 204.04042 * 13 12 10 15 15 C 1.55161 * 101.48200 * 323.22685 * 14 13 12 16 16 H 1.09004 * 110.71642 * 276.82390 * 15 14 13 17 17 N 1.46500 * 110.71751 * 153.73571 * 15 14 13 18 18 C 1.36932 * 120.00278 * 88.84055 * 17 15 14 19 19 H 1.08003 * 120.00236 * 359.97438 * 18 17 15 20 20 C 1.38815 * 120.00007 * 180.02562 * 18 17 15 21 21 N 1.31615 * 120.00185 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99761 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47099 * 269.99645 * 22 20 18 24 24 H 1.48502 * 109.47181 * 29.99656 * 22 20 18 25 25 H 1.48502 * 109.47058 * 149.99662 * 22 20 18 26 26 C 1.47027 * 125.64836 * 1.13865 * 12 10 9 27 27 H 1.09006 * 109.88045 * 59.48774 * 26 12 10 28 28 C 1.52998 * 110.01029 * 298.39476 * 26 12 10 29 29 C 1.41559 * 118.93809 * 359.54921 * 5 4 3 30 30 N 1.31236 * 119.14944 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47291 * 269.98917 * 1 2 3 32 32 H 1.09010 * 109.46600 * 29.98581 * 1 2 3 33 33 H 1.09000 * 109.47292 * 149.98004 * 1 2 3 34 34 H 1.07999 * 120.04482 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.92309 * 179.97438 * 4 3 2 36 36 H 1.08005 * 119.95034 * 0.02562 * 6 5 4 37 37 H 1.08009 * 119.46939 * 179.97438 * 7 6 5 38 38 H 1.07997 * 119.64281 * 179.97438 * 8 7 6 39 39 H 1.08995 * 110.36674 * 323.00724 * 13 12 10 40 40 H 1.09003 * 110.36077 * 85.33217 * 13 12 10 41 41 H 1.08993 * 111.16367 * 205.13705 * 14 13 12 42 42 H 1.08995 * 110.93325 * 81.21417 * 14 13 12 43 43 H 0.97006 * 119.99713 * 268.83882 * 17 15 14 44 44 H 0.96996 * 120.00173 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.46755 * 289.84311 * 28 26 12 46 46 H 1.09006 * 109.47202 * 49.83963 * 28 26 12 47 47 H 1.09001 * 109.47321 * 169.84284 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2158 0.0000 4 6 3.5515 1.2337 0.0088 5 6 4.2321 0.0011 0.0036 6 6 5.6357 -0.0568 -0.0028 7 6 6.2698 -1.2634 -0.0082 8 6 5.5499 -2.4513 -0.0082 9 6 4.1629 -2.4395 -0.0020 10 6 3.4074 -3.7056 -0.0026 11 8 2.2019 -3.6943 0.1559 12 7 4.0530 -4.8755 -0.1787 13 6 3.4217 -6.2069 -0.2237 14 6 4.5465 -7.1968 0.1783 15 6 5.7848 -6.5465 -0.4933 16 1 5.8495 -6.8335 -1.5429 17 7 7.0121 -6.9118 0.2185 18 6 7.6941 -8.0467 -0.1307 19 1 7.3271 -8.6728 -0.9305 20 6 8.8567 -8.3931 0.5441 21 7 9.3037 -7.6304 1.5192 22 14 9.7866 -9.9417 0.0683 23 1 9.2788 -11.0882 0.8638 24 1 9.5861 -10.2150 -1.3775 25 1 11.2343 -9.7530 0.3402 26 6 5.5037 -5.0353 -0.3568 27 1 6.0298 -4.6372 0.5110 28 6 5.9595 -4.3048 -1.6215 29 6 3.4788 -1.1973 -0.0007 30 7 2.1463 -1.1462 -0.0005 31 1 -0.3634 -0.0002 1.0276 32 1 -0.3633 0.8902 -0.5137 33 1 -0.3634 -0.8898 -0.5141 34 1 1.6324 2.1435 0.0004 35 1 4.0944 2.1673 0.0085 36 1 6.2130 0.8560 -0.0033 37 1 7.3493 -1.2963 -0.0135 38 1 6.0759 -3.3946 -0.0130 39 1 2.5968 -6.2598 0.4867 40 1 3.0700 -6.4260 -1.2319 41 1 4.3592 -8.1910 -0.2272 42 1 4.6638 -7.2339 1.2613 43 1 7.3416 -6.3497 0.9371 44 1 10.1163 -7.8723 1.9905 45 1 5.5873 -4.8323 -2.4998 46 1 5.5671 -3.2879 -1.6152 47 1 7.0487 -4.2739 -1.6507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986414737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:57 Heat of formation + Delta-G solvation = 85.107692 kcal Electronic energy + Delta-G solvation = -29511.871554 eV Core-core repulsion = 25661.794329 eV Total energy + Delta-G solvation = -3850.077225 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.31244 -39.92465 -37.36547 -37.33951 -34.19752 -33.73740 -32.45004 -31.65303 -31.43452 -29.71515 -29.00099 -27.92254 -25.46366 -23.96533 -23.85844 -23.15922 -22.55279 -21.66381 -20.42532 -19.21476 -18.39159 -17.54161 -16.96482 -16.49994 -16.11148 -15.68756 -15.19305 -15.04791 -14.78757 -14.51442 -14.00394 -13.90288 -13.88923 -13.39074 -13.28953 -13.12106 -13.02212 -12.90678 -12.62281 -12.40840 -12.28343 -12.09080 -11.83574 -11.61379 -11.43888 -11.25399 -11.06597 -10.91125 -10.86835 -10.65802 -10.41997 -10.25454 -10.08392 -9.86782 -9.75322 -9.10833 -9.00080 -8.68802 -8.41270 -8.20740 -7.09606 -5.87480 -3.17897 0.07759 0.70931 1.66654 2.67543 3.16729 3.32747 3.38028 3.43984 3.44982 4.07326 4.08832 4.34450 4.47886 4.51853 4.63016 4.70102 4.81183 4.87019 5.01635 5.07888 5.15901 5.18527 5.28509 5.35928 5.45505 5.46439 5.48719 5.56318 5.61710 5.71540 5.75241 5.81174 5.87974 5.88991 5.89936 6.02286 6.11204 6.15635 6.22054 6.25597 6.28361 6.36987 6.43725 6.55017 6.66998 6.69260 6.89257 7.61469 7.79789 7.98264 8.29677 8.51987 9.41697 9.94238 10.29206 11.34647 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020495 B = 0.002828 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.863482 B = 9897.908383 C =10939.469133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.155 3.845 3 C -0.179 4.179 4 C -0.054 4.054 5 C -0.123 4.123 6 C -0.071 4.071 7 C -0.132 4.132 8 C -0.084 4.084 9 C -0.122 4.122 10 C 0.571 3.429 11 O -0.511 6.511 12 N -0.608 5.608 13 C 0.109 3.891 14 C -0.156 4.156 15 C 0.178 3.822 16 H 0.069 0.931 17 N -0.715 5.715 18 C -0.243 4.243 19 H 0.073 0.927 20 C -0.009 4.009 21 N -0.930 5.930 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.281 1.281 25 H -0.291 1.291 26 C 0.106 3.894 27 H 0.089 0.911 28 C -0.183 4.183 29 C 0.173 3.827 30 N -0.441 5.441 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.182 0.818 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.385 0.615 44 H 0.257 0.743 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.881 18.557 -4.473 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.002 3.998 3 C -0.199 4.199 4 C -0.080 4.080 5 C -0.126 4.126 6 C -0.090 4.090 7 C -0.150 4.150 8 C -0.103 4.103 9 C -0.125 4.125 10 C 0.360 3.640 11 O -0.386 6.386 12 N -0.343 5.343 13 C -0.013 4.013 14 C -0.197 4.197 15 C 0.067 3.933 16 H 0.087 0.913 17 N -0.356 5.356 18 C -0.374 4.374 19 H 0.091 0.909 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.207 1.207 25 H -0.218 1.218 26 C 0.002 3.998 27 H 0.106 0.894 28 C -0.240 4.240 29 C 0.049 3.951 30 N -0.149 5.149 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.153 0.847 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.199 0.801 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.877 17.609 -4.455 21.703 hybrid contribution 1.308 0.215 0.092 1.329 sum -10.569 17.824 -4.362 21.176 Atomic orbital electron populations 1.20764 0.88739 1.03515 1.03243 1.21674 0.97435 0.88142 0.92539 1.21718 0.95047 0.99267 1.03823 1.21424 0.94462 0.96960 0.95148 1.18790 0.94812 0.93919 1.05037 1.21175 0.92522 0.98731 0.96530 1.20968 1.00957 0.91869 1.01233 1.23373 0.93705 1.02226 0.91028 1.19746 0.93094 0.92174 1.07523 1.17542 0.86800 0.82029 0.77670 1.90807 1.13237 1.86181 1.48411 1.48435 1.08119 1.06095 1.71607 1.22262 0.96751 0.81327 1.00987 1.23615 0.95715 0.98052 1.02308 1.21262 0.87371 0.88249 0.96436 0.91319 1.42337 1.24278 1.28328 1.40608 1.19195 1.03834 0.99904 1.14499 0.90946 1.24749 0.98386 0.98971 0.98434 1.69647 1.24311 1.38914 1.24917 0.86188 0.79162 0.82896 0.77897 1.21643 1.20679 1.21751 1.22301 0.80611 0.99186 0.97749 0.89382 1.22866 1.02787 1.00746 0.97592 1.18559 0.89218 0.91366 0.95931 1.68148 1.07862 1.27635 1.11285 0.90212 0.90790 0.90059 0.84706 0.84364 0.85058 0.84570 0.80148 0.90956 0.91951 0.90407 0.90646 0.78077 0.93353 0.91860 0.91056 0.90185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.15 36.01 0.37 -0.61 16 2 C 0.15 1.93 6.78 -82.48 -0.56 1.37 16 3 C -0.18 -1.72 9.64 -39.79 -0.38 -2.10 16 4 C -0.05 -0.52 9.90 -39.19 -0.39 -0.91 16 5 C -0.12 -1.53 5.74 -106.82 -0.61 -2.14 16 6 C -0.07 -0.72 9.75 -39.43 -0.38 -1.11 16 7 C -0.13 -1.46 9.93 -40.03 -0.40 -1.85 16 8 C -0.08 -1.14 6.20 -39.16 -0.24 -1.38 16 9 C -0.12 -1.96 5.38 -104.61 -0.56 -2.52 16 10 C 0.57 10.38 7.64 -12.51 -0.10 10.28 16 11 O -0.51 -10.69 15.49 5.29 0.08 -10.61 16 12 N -0.61 -10.11 3.07 -166.77 -0.51 -10.62 16 13 C 0.11 1.73 6.91 -2.41 -0.02 1.71 16 14 C -0.16 -2.63 6.79 -24.46 -0.17 -2.80 16 15 C 0.18 3.24 3.12 -66.10 -0.21 3.04 16 16 H 0.07 1.25 7.64 -51.93 -0.40 0.85 16 17 N -0.72 -16.29 5.24 -51.65 -0.27 -16.56 16 18 C -0.24 -6.27 9.97 -15.06 -0.15 -6.42 16 19 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.93 -26.56 13.06 55.49 0.72 -25.83 16 22 Si 0.91 21.38 29.55 -169.99 -5.02 16.36 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 C 0.11 1.67 2.47 -66.96 -0.17 1.51 16 27 H 0.09 1.43 5.81 -51.93 -0.30 1.13 16 28 C -0.18 -2.53 7.84 37.16 0.29 -2.24 16 29 C 0.17 2.72 6.61 -84.58 -0.56 2.16 16 30 N -0.44 -7.22 8.37 -7.01 -0.06 -7.28 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.47 8.07 -51.92 -0.42 0.05 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 36 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 37 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 38 H 0.18 2.46 2.10 -56.05 -0.12 2.34 16 39 H 0.07 1.16 8.02 -51.93 -0.42 0.75 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.38 9.33 7.53 -40.82 -0.31 9.02 16 44 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.06 0.87 7.88 -51.93 -0.41 0.46 16 46 H 0.07 0.96 4.24 -51.99 -0.22 0.74 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -32.95 374.93 -10.10 -43.05 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -6.36 Total: 10.19 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -4.33 Total: -4.34 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.12 Total: -60.30 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.95 -10.10 -43.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986414737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.160 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds