Wall clock time and date at job start Tue Mar 31 2020 22:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39227 * 119.15729 * 2 1 4 4 C 1.36633 * 119.90410 * 179.57555 * 3 2 1 5 5 C 1.40798 * 118.15781 * 0.64803 * 4 3 2 6 6 C 1.40477 * 121.27128 * 179.29430 * 5 4 3 7 7 C 1.36306 * 120.08574 * 180.02562 * 6 5 4 8 8 C 1.38904 * 121.06367 * 0.02562 * 7 6 5 9 9 C 1.38711 * 120.72417 * 359.97438 * 8 7 6 10 10 C 1.47439 * 120.33469 * 179.97438 * 9 8 7 11 11 O 1.21592 * 119.99932 * 171.64109 * 10 9 8 12 12 N 1.34780 * 119.99839 * 351.64181 * 10 9 8 13 13 C 1.47421 * 125.64756 * 181.09144 * 12 10 9 14 14 C 1.55126 * 104.94498 * 204.04042 * 13 12 10 15 15 C 1.55161 * 101.48200 * 323.22685 * 14 13 12 16 16 H 1.09004 * 110.71642 * 276.82390 * 15 14 13 17 17 N 1.46500 * 110.71751 * 153.73571 * 15 14 13 18 18 C 1.36932 * 120.00278 * 88.84055 * 17 15 14 19 19 H 1.08003 * 120.00236 * 359.97438 * 18 17 15 20 20 C 1.38815 * 120.00007 * 180.02562 * 18 17 15 21 21 N 1.31615 * 120.00185 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99761 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47099 * 269.99645 * 22 20 18 24 24 H 1.48502 * 109.47181 * 29.99656 * 22 20 18 25 25 H 1.48502 * 109.47058 * 149.99662 * 22 20 18 26 26 C 1.47027 * 125.64836 * 1.13865 * 12 10 9 27 27 H 1.09006 * 109.88045 * 59.48774 * 26 12 10 28 28 C 1.52998 * 110.01029 * 298.39476 * 26 12 10 29 29 C 1.41559 * 118.93809 * 359.54921 * 5 4 3 30 30 N 1.31236 * 119.14944 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47291 * 269.98917 * 1 2 3 32 32 H 1.09010 * 109.46600 * 29.98581 * 1 2 3 33 33 H 1.09000 * 109.47292 * 149.98004 * 1 2 3 34 34 H 1.07999 * 120.04482 * 0.02562 * 3 2 1 35 35 H 1.08003 * 120.92309 * 179.97438 * 4 3 2 36 36 H 1.08005 * 119.95034 * 0.02562 * 6 5 4 37 37 H 1.08009 * 119.46939 * 179.97438 * 7 6 5 38 38 H 1.07997 * 119.64281 * 179.97438 * 8 7 6 39 39 H 1.08995 * 110.36674 * 323.00724 * 13 12 10 40 40 H 1.09003 * 110.36077 * 85.33217 * 13 12 10 41 41 H 1.08993 * 111.16367 * 205.13705 * 14 13 12 42 42 H 1.08995 * 110.93325 * 81.21417 * 14 13 12 43 43 H 0.97006 * 119.99713 * 268.83882 * 17 15 14 44 44 H 0.96996 * 120.00173 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.46755 * 289.84311 * 28 26 12 46 46 H 1.09006 * 109.47202 * 49.83963 * 28 26 12 47 47 H 1.09001 * 109.47321 * 169.84284 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2158 0.0000 4 6 3.5515 1.2337 0.0088 5 6 4.2321 0.0011 0.0036 6 6 5.6357 -0.0568 -0.0028 7 6 6.2698 -1.2634 -0.0082 8 6 5.5499 -2.4513 -0.0082 9 6 4.1629 -2.4395 -0.0020 10 6 3.4074 -3.7056 -0.0026 11 8 2.2019 -3.6943 0.1559 12 7 4.0530 -4.8755 -0.1787 13 6 3.4217 -6.2069 -0.2237 14 6 4.5465 -7.1968 0.1783 15 6 5.7848 -6.5465 -0.4933 16 1 5.8495 -6.8335 -1.5429 17 7 7.0121 -6.9118 0.2185 18 6 7.6941 -8.0467 -0.1307 19 1 7.3271 -8.6728 -0.9305 20 6 8.8567 -8.3931 0.5441 21 7 9.3037 -7.6304 1.5192 22 14 9.7866 -9.9417 0.0683 23 1 9.2788 -11.0882 0.8638 24 1 9.5861 -10.2150 -1.3775 25 1 11.2343 -9.7530 0.3402 26 6 5.5037 -5.0353 -0.3568 27 1 6.0298 -4.6372 0.5110 28 6 5.9595 -4.3048 -1.6215 29 6 3.4788 -1.1973 -0.0007 30 7 2.1463 -1.1462 -0.0005 31 1 -0.3634 -0.0002 1.0276 32 1 -0.3633 0.8902 -0.5137 33 1 -0.3634 -0.8898 -0.5141 34 1 1.6324 2.1435 0.0004 35 1 4.0944 2.1673 0.0085 36 1 6.2130 0.8560 -0.0033 37 1 7.3493 -1.2963 -0.0135 38 1 6.0759 -3.3946 -0.0130 39 1 2.5968 -6.2598 0.4867 40 1 3.0700 -6.4260 -1.2319 41 1 4.3592 -8.1910 -0.2272 42 1 4.6638 -7.2339 1.2613 43 1 7.3416 -6.3497 0.9371 44 1 10.1163 -7.8723 1.9905 45 1 5.5873 -4.8323 -2.4998 46 1 5.5671 -3.2879 -1.6152 47 1 7.0487 -4.2739 -1.6507 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986414737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:57 Heat of formation + Delta-G solvation = 64.943677 kcal Electronic energy + Delta-G solvation = -29512.745932 eV Core-core repulsion = 25661.794329 eV Total energy + Delta-G solvation = -3850.951602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.34945 -41.08045 -38.79678 -38.29788 -35.92401 -34.74056 -33.49487 -33.18154 -32.54201 -31.02332 -30.35267 -28.79406 -27.00886 -25.15705 -24.94713 -24.70131 -23.38487 -22.82171 -21.86120 -20.47433 -19.36587 -19.25764 -18.15957 -17.56845 -17.30098 -16.85617 -16.58061 -16.21616 -16.02916 -15.74575 -15.32937 -15.24634 -14.87320 -14.73243 -14.52682 -14.36203 -14.00750 -13.89022 -13.75620 -13.53477 -13.46780 -13.12427 -13.00953 -12.92103 -12.81497 -12.66867 -12.50313 -12.35714 -12.14432 -12.10042 -11.88569 -11.70787 -11.48072 -11.34024 -11.07224 -10.90292 -10.13015 -9.73840 -9.57633 -9.21370 -9.00832 -7.92023 -5.21142 -0.82375 -0.17305 0.75713 1.51941 1.52709 1.60503 1.74805 1.87772 2.16361 2.58574 3.12045 3.20224 3.31925 3.38700 3.54634 3.68964 3.77006 3.83185 3.89900 3.97316 3.98914 4.05893 4.15443 4.26175 4.33011 4.35586 4.42309 4.53325 4.59921 4.66619 4.71104 4.76688 4.79863 4.86396 4.89433 4.94971 5.03990 5.09356 5.13318 5.16825 5.21484 5.23835 5.29888 5.37819 5.42319 5.57380 5.60297 5.85399 6.28140 6.46451 7.08666 7.19452 7.36615 8.05981 8.31139 9.30881 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020495 B = 0.002828 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.863482 B = 9897.908383 C =10939.469133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.141 3.859 3 C -0.178 4.178 4 C -0.043 4.043 5 C -0.142 4.142 6 C -0.046 4.046 7 C -0.146 4.146 8 C -0.076 4.076 9 C -0.163 4.163 10 C 0.565 3.435 11 O -0.552 6.552 12 N -0.609 5.609 13 C 0.112 3.888 14 C -0.146 4.146 15 C 0.175 3.825 16 H 0.075 0.925 17 N -0.723 5.723 18 C -0.236 4.236 19 H 0.080 0.920 20 C -0.069 4.069 21 N -0.966 5.966 22 Si 0.967 3.033 23 H -0.292 1.292 24 H -0.268 1.268 25 H -0.298 1.298 26 C 0.116 3.884 27 H 0.084 0.916 28 C -0.173 4.173 29 C 0.144 3.856 30 N -0.501 5.501 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.058 0.942 34 H 0.176 0.824 35 H 0.185 0.815 36 H 0.177 0.823 37 H 0.164 0.836 38 H 0.175 0.825 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.056 0.944 43 H 0.375 0.625 44 H 0.251 0.749 45 H 0.064 0.936 46 H 0.078 0.922 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.333 21.446 -5.649 24.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.011 4.011 3 C -0.197 4.197 4 C -0.069 4.069 5 C -0.144 4.144 6 C -0.065 4.065 7 C -0.163 4.163 8 C -0.095 4.095 9 C -0.166 4.166 10 C 0.356 3.644 11 O -0.431 6.431 12 N -0.343 5.343 13 C -0.010 4.010 14 C -0.187 4.187 15 C 0.065 3.935 16 H 0.093 0.907 17 N -0.363 5.363 18 C -0.368 4.368 19 H 0.098 0.902 20 C -0.262 4.262 21 N -0.616 5.616 22 Si 0.797 3.203 23 H -0.220 1.220 24 H -0.193 1.193 25 H -0.225 1.225 26 C 0.012 3.988 27 H 0.101 0.899 28 C -0.230 4.230 29 C 0.021 3.979 30 N -0.210 5.210 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.077 0.923 34 H 0.194 0.806 35 H 0.202 0.798 36 H 0.194 0.806 37 H 0.181 0.819 38 H 0.191 0.809 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.075 0.925 43 H 0.208 0.792 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.355 20.492 -5.669 24.103 hybrid contribution 1.016 -0.557 0.455 1.245 sum -10.339 19.935 -5.214 23.054 Atomic orbital electron populations 1.20853 0.87288 1.04111 1.03808 1.22315 0.98768 0.88602 0.91390 1.22114 0.95537 0.99502 1.02584 1.21967 0.94669 0.97435 0.92786 1.19149 0.95885 0.93919 1.05423 1.21673 0.91810 1.00076 0.92903 1.21272 1.02201 0.91247 1.01618 1.23328 0.92733 1.03218 0.90267 1.19694 0.94014 0.91458 1.11471 1.18050 0.86636 0.82984 0.76737 1.90759 1.14923 1.86821 1.50560 1.48494 1.08384 1.06091 1.71328 1.22250 0.96155 0.80939 1.01659 1.23450 0.95423 0.98791 1.00997 1.21408 0.85986 0.89953 0.96148 0.90722 1.42431 1.25463 1.27632 1.40736 1.19557 1.03385 1.00238 1.13606 0.90234 1.25462 0.99786 1.01835 0.99086 1.69790 1.24715 1.40661 1.26447 0.85231 0.77366 0.79606 0.78070 1.21955 1.19316 1.22491 1.22180 0.80164 0.97656 0.98755 0.89909 1.22775 1.03078 1.00863 0.96281 1.18848 0.89660 0.92443 0.96951 1.68090 1.08828 1.30072 1.14043 0.89557 0.87233 0.92337 0.80648 0.79820 0.80580 0.81860 0.80900 0.91523 0.90431 0.89380 0.92492 0.79202 0.94056 0.91666 0.90381 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 10.15 71.24 0.72 -1.14 16 2 C 0.14 3.43 6.78 42.89 0.29 3.72 16 3 C -0.18 -2.85 9.64 22.13 0.21 -2.64 16 4 C -0.04 -0.66 9.90 22.52 0.22 -0.44 16 5 C -0.14 -3.19 5.74 -21.29 -0.12 -3.31 16 6 C -0.05 -0.78 9.75 22.36 0.22 -0.56 16 7 C -0.15 -2.87 9.93 21.98 0.22 -2.65 16 8 C -0.08 -2.05 6.20 22.54 0.14 -1.91 16 9 C -0.16 -5.41 5.38 -19.86 -0.11 -5.52 16 10 C 0.56 21.72 7.64 86.67 0.66 22.38 16 11 O -0.55 -24.74 15.49 -4.00 -0.06 -24.80 16 12 N -0.61 -21.03 3.07 -799.79 -2.46 -23.49 16 13 C 0.11 3.66 6.91 86.93 0.60 4.26 16 14 C -0.15 -5.00 6.79 32.06 0.22 -4.78 16 15 C 0.18 6.38 3.12 46.18 0.14 6.52 16 16 H 0.07 2.66 7.64 -2.38 -0.02 2.64 16 17 N -0.72 -33.26 5.24 -317.33 -1.66 -34.92 16 18 C -0.24 -12.11 9.97 84.04 0.84 -11.28 16 19 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 20 C -0.07 -3.74 5.50 84.86 0.47 -3.27 16 21 N -0.97 -56.04 13.06 21.65 0.28 -55.76 16 22 Si 0.97 44.08 29.55 68.60 2.03 46.10 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 26 C 0.12 3.74 2.47 45.34 0.11 3.85 16 27 H 0.08 2.79 5.81 -2.38 -0.01 2.77 16 28 C -0.17 -4.72 7.84 71.98 0.56 -4.16 16 29 C 0.14 4.60 6.61 40.62 0.27 4.87 16 30 N -0.50 -17.00 8.37 -176.09 -1.47 -18.47 16 31 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.11 1.11 8.07 -2.38 -0.02 1.09 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 34 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 35 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 36 H 0.18 1.37 8.06 -2.91 -0.02 1.34 16 37 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.17 4.75 2.10 -6.26 -0.01 4.73 16 39 H 0.07 2.25 8.02 -2.39 -0.02 2.23 16 40 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.38 18.63 7.53 -92.70 -0.70 17.93 16 44 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 45 H 0.06 1.74 7.88 -2.39 -0.02 1.72 16 46 H 0.08 2.08 4.24 -2.44 -0.01 2.07 16 47 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -75.96 374.93 2.63 -73.33 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.31 Total: 34.06 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 5.67 Total: 3.95 kcal Atomic # 7 Polarization: -127.33 SS G_CDS: -5.31 Total: -132.63 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.06 Total: -24.80 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.10 kcal Total: -75.96 2.63 -73.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986414737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.270 kcal (2) G-P(sol) polarization free energy of solvation -75.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds