Wall clock time and date at job start Tue Mar 31 2020 22:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39235 * 119.15506 * 2 1 4 4 C 1.36631 * 119.90597 * 180.02562 * 3 2 1 5 5 C 1.40804 * 118.15650 * 359.97438 * 4 3 2 6 6 C 1.40470 * 121.26339 * 179.97438 * 5 4 3 7 7 C 1.36319 * 120.08557 * 179.97438 * 6 5 4 8 8 C 1.38906 * 121.05809 * 0.02564 * 7 6 5 9 9 C 1.38711 * 120.72327 * 0.02562 * 8 7 6 10 10 C 1.47442 * 120.33125 * 180.02562 * 9 8 7 11 11 O 1.21599 * 120.00338 * 139.82044 * 10 9 8 12 12 N 1.34782 * 119.99707 * 319.82742 * 10 9 8 13 13 C 1.47423 * 125.64787 * 4.87520 * 12 10 9 14 14 C 1.54911 * 104.83150 * 204.09553 * 13 12 10 15 15 C 1.55162 * 101.57914 * 322.99337 * 14 13 12 16 16 H 1.09000 * 110.71822 * 153.86508 * 15 14 13 17 17 N 1.46501 * 110.71777 * 277.13673 * 15 14 13 18 18 C 1.36944 * 119.99789 * 270.73557 * 17 15 14 19 19 H 1.07998 * 120.00152 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99422 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99703 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00532 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47246 * 89.99694 * 22 20 18 24 24 H 1.48491 * 109.47105 * 210.00232 * 22 20 18 25 25 H 1.48506 * 109.46527 * 329.99692 * 22 20 18 26 26 C 1.47024 * 125.64546 * 184.57277 * 12 10 9 27 27 H 1.09005 * 109.88198 * 59.55859 * 26 12 10 28 28 C 1.52999 * 109.88230 * 298.39288 * 26 12 10 29 29 C 1.41554 * 118.93986 * 0.02747 * 5 4 3 30 30 N 1.31239 * 119.15508 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47343 * 269.98133 * 1 2 3 32 32 H 1.08996 * 109.46957 * 29.98303 * 1 2 3 33 33 H 1.08999 * 109.46766 * 149.98122 * 1 2 3 34 34 H 1.08000 * 120.04326 * 359.97119 * 3 2 1 35 35 H 1.07996 * 120.92446 * 180.02562 * 4 3 2 36 36 H 1.07995 * 119.96102 * 359.97438 * 6 5 4 37 37 H 1.08003 * 119.47022 * 180.02562 * 7 6 5 38 38 H 1.08004 * 119.64021 * 179.97438 * 8 7 6 39 39 H 1.08996 * 110.37256 * 322.93530 * 13 12 10 40 40 H 1.08998 * 110.36607 * 85.26367 * 13 12 10 41 41 H 1.09002 * 111.00439 * 81.06403 * 14 13 12 42 42 H 1.08999 * 111.00635 * 204.88505 * 14 13 12 43 43 H 0.96990 * 120.00216 * 90.74261 * 17 15 14 44 44 H 0.97002 * 120.00081 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.47309 * 67.60263 * 28 26 12 46 46 H 1.08997 * 109.46915 * 187.60403 * 28 26 12 47 47 H 1.09003 * 109.46701 * 307.59964 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2339 -0.0005 5 6 4.2321 0.0013 -0.0005 6 6 5.6356 -0.0565 -0.0016 7 6 6.2699 -1.2631 -0.0010 8 6 5.5501 -2.4511 0.0001 9 6 4.1630 -2.4393 0.0001 10 6 3.4076 -3.7055 0.0019 11 8 2.4052 -3.8145 0.6814 12 7 3.8283 -4.7422 -0.7497 13 6 5.0741 -4.7830 -1.5369 14 6 4.8084 -5.8316 -2.6458 15 6 3.9621 -6.8844 -1.8824 16 1 3.3185 -7.4336 -2.5696 17 7 4.8265 -7.8011 -1.1349 18 6 5.2914 -8.9430 -1.7311 19 1 5.0211 -9.1675 -2.7523 20 6 6.1100 -9.8118 -1.0226 21 7 6.5564 -10.9096 -1.5953 22 14 6.5769 -9.4239 0.7440 23 1 5.5723 -10.0164 1.6631 24 1 7.9154 -9.9950 1.0391 25 1 6.6141 -7.9515 0.9341 26 6 3.1238 -6.0220 -0.9153 27 1 2.1346 -5.8485 -1.3390 28 6 2.9977 -6.7254 0.4375 29 6 3.4788 -1.1972 -0.0005 30 7 2.1463 -1.1461 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8901 -0.5136 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6322 2.1436 -0.0005 35 1 4.0943 2.1675 -0.0001 36 1 6.2130 0.8562 -0.0028 37 1 7.3494 -1.2959 -0.0014 38 1 6.0761 -3.3944 0.0001 39 1 5.2762 -3.8071 -1.9783 40 1 5.9088 -5.0969 -0.9101 41 1 4.2408 -5.3956 -3.4679 42 1 5.7416 -6.2655 -3.0049 43 1 5.0695 -7.5994 -0.2179 44 1 7.1288 -11.5166 -1.1004 45 1 2.3257 -6.1576 1.0810 46 1 2.5979 -7.7285 0.2895 47 1 3.9799 -6.7911 0.9057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986414738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:01 Heat of formation + Delta-G solvation = 49.660462 kcal Electronic energy + Delta-G solvation = -29558.980561 eV Core-core repulsion = 25707.366229 eV Total energy + Delta-G solvation = -3851.614332 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.25255 -39.84894 -37.67831 -37.16200 -34.13989 -33.68092 -32.26556 -31.79459 -30.94912 -30.40421 -29.04539 -28.10753 -25.52317 -24.23976 -23.97561 -23.10073 -22.70670 -21.88495 -19.90300 -18.91024 -18.41644 -17.86451 -17.28805 -16.61993 -16.37061 -15.97566 -15.04185 -14.95349 -14.77515 -14.52753 -14.35487 -13.91704 -13.63781 -13.59144 -13.36946 -13.18681 -13.16109 -13.00154 -12.58450 -12.45392 -12.38452 -12.21746 -11.89053 -11.60422 -11.58152 -11.50320 -11.14743 -11.03908 -10.83509 -10.73703 -10.68407 -10.26983 -10.10562 -9.82304 -9.59075 -9.31987 -8.99560 -8.92715 -8.49730 -8.31343 -7.33489 -5.82259 -3.18320 -0.02321 0.55641 1.57156 2.55062 3.03110 3.21758 3.33174 3.37373 3.42673 3.89255 3.93296 4.24791 4.39533 4.50786 4.54267 4.56270 4.70289 4.81782 4.97495 5.00238 5.06416 5.16567 5.21800 5.25911 5.38124 5.41005 5.47728 5.57083 5.60665 5.62314 5.68739 5.73001 5.75987 5.79401 5.82214 5.97388 6.02852 6.07581 6.22797 6.24272 6.30617 6.40470 6.52595 6.54253 6.67152 6.73743 6.84114 7.75556 7.83980 7.94135 8.36923 8.44087 9.14707 9.87103 10.06565 11.35776 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.003049 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.227426 B = 9181.302431 C = 9814.320922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.159 3.841 3 C -0.174 4.174 4 C -0.055 4.055 5 C -0.115 4.115 6 C -0.077 4.077 7 C -0.123 4.123 8 C -0.068 4.068 9 C -0.098 4.098 10 C 0.575 3.425 11 O -0.513 6.513 12 N -0.608 5.608 13 C 0.099 3.901 14 C -0.158 4.158 15 C 0.178 3.822 16 H 0.079 0.921 17 N -0.739 5.739 18 C -0.245 4.245 19 H 0.092 0.908 20 C 0.009 3.991 21 N -0.931 5.931 22 Si 0.879 3.121 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.128 3.872 27 H 0.076 0.924 28 C -0.152 4.152 29 C 0.168 3.832 30 N -0.452 5.452 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.141 0.859 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.365 0.635 44 H 0.260 0.740 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.811 27.584 1.525 28.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.006 3.994 3 C -0.193 4.193 4 C -0.081 4.081 5 C -0.117 4.117 6 C -0.096 4.096 7 C -0.141 4.141 8 C -0.088 4.088 9 C -0.102 4.102 10 C 0.363 3.637 11 O -0.389 6.389 12 N -0.343 5.343 13 C -0.023 4.023 14 C -0.199 4.199 15 C 0.067 3.933 16 H 0.097 0.903 17 N -0.383 5.383 18 C -0.375 4.375 19 H 0.110 0.890 20 C -0.187 4.187 21 N -0.578 5.578 22 Si 0.709 3.291 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.205 1.205 26 C 0.024 3.976 27 H 0.094 0.906 28 C -0.210 4.210 29 C 0.045 3.955 30 N -0.160 5.160 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.159 0.841 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.200 0.800 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.728 26.489 1.794 27.160 hybrid contribution 1.216 1.042 1.285 2.053 sum -4.513 27.531 3.079 28.068 Atomic orbital electron populations 1.20784 0.88548 1.03650 1.03420 1.21635 0.97440 0.88018 0.92286 1.21743 0.95057 0.99309 1.03237 1.21445 0.94476 0.96994 0.95167 1.18784 0.94821 0.93864 1.04269 1.21113 0.92500 0.98651 0.97351 1.20864 1.00695 0.91834 1.00707 1.21702 0.92566 0.99712 0.94840 1.19831 0.93342 0.92440 1.04586 1.17477 0.84412 0.81953 0.79869 1.90779 1.25263 1.82162 1.40662 1.48575 1.23612 1.14698 1.47381 1.22489 0.86706 0.99669 0.93476 1.23499 1.02967 0.97011 0.96454 1.21184 0.91098 0.89341 0.91720 0.90342 1.42897 1.58342 1.23703 1.13315 1.19065 1.24052 0.95787 0.98605 0.88975 1.24639 0.99858 0.96692 0.97538 1.69693 1.38695 1.12790 1.36659 0.86652 0.78111 0.77566 0.86752 1.20901 1.21676 1.20501 1.21990 0.96009 0.82365 0.97204 0.90595 1.21972 1.01822 1.00797 0.96451 1.18491 0.89222 0.91303 0.96486 1.67983 1.07982 1.28291 1.11744 0.90032 0.90600 0.90057 0.84485 0.84203 0.84941 0.84727 0.84126 0.91317 0.91325 0.91630 0.89007 0.79993 0.92990 0.92066 0.90927 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.15 36.00 0.37 -0.54 16 2 C 0.16 1.83 6.78 -82.48 -0.56 1.27 16 3 C -0.17 -1.50 9.64 -39.79 -0.38 -1.88 16 4 C -0.06 -0.47 9.90 -39.19 -0.39 -0.86 16 5 C -0.12 -1.28 5.74 -106.82 -0.61 -1.90 16 6 C -0.08 -0.68 9.75 -39.43 -0.38 -1.06 16 7 C -0.12 -1.13 9.93 -40.03 -0.40 -1.53 16 8 C -0.07 -0.81 7.92 -39.16 -0.31 -1.12 16 9 C -0.10 -1.48 5.46 -104.61 -0.57 -2.05 16 10 C 0.58 10.18 7.13 -12.51 -0.09 10.09 16 11 O -0.51 -10.63 15.16 5.28 0.08 -10.55 16 12 N -0.61 -10.11 3.06 -164.26 -0.50 -10.61 16 13 C 0.10 1.45 5.18 -2.53 -0.01 1.44 16 14 C -0.16 -2.49 6.77 -24.58 -0.17 -2.66 16 15 C 0.18 3.27 3.48 -66.09 -0.23 3.04 16 16 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 17 N -0.74 -16.53 4.40 -51.64 -0.23 -16.76 16 18 C -0.25 -6.57 10.45 -15.06 -0.16 -6.72 16 19 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 20 C 0.01 0.25 5.50 -17.43 -0.10 0.16 16 21 N -0.93 -28.50 13.97 55.49 0.78 -27.73 16 22 Si 0.88 21.77 27.74 -169.99 -4.71 17.05 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 26 C 0.13 2.23 3.45 -66.95 -0.23 2.00 16 27 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 28 C -0.15 -2.80 8.17 37.16 0.30 -2.49 16 29 C 0.17 2.46 6.58 -84.58 -0.56 1.90 16 30 N -0.45 -6.95 9.03 -7.01 -0.06 -7.01 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 37 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.14 1.59 5.81 -52.48 -0.30 1.29 16 39 H 0.07 0.87 6.73 -51.93 -0.35 0.52 16 40 H 0.07 1.03 7.31 -51.93 -0.38 0.65 16 41 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.36 8.27 3.55 -40.82 -0.14 8.12 16 44 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.06 1.14 6.96 -51.93 -0.36 0.78 16 46 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 47 H 0.05 1.02 6.54 -51.93 -0.34 0.68 16 LS Contribution 376.60 15.07 5.68 5.68 Total: -1.00 -34.68 376.60 -10.00 -44.68 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -6.54 Total: 8.16 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -4.48 Total: -2.92 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.02 Total: -62.10 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.08 Total: -10.55 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.05 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.68 -10.00 -44.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986414738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.338 kcal (2) G-P(sol) polarization free energy of solvation -34.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds