Wall clock time and date at job start Tue Mar 31 2020 22:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39235 * 119.15506 * 2 1 4 4 C 1.36631 * 119.90597 * 180.02562 * 3 2 1 5 5 C 1.40804 * 118.15650 * 359.97438 * 4 3 2 6 6 C 1.40470 * 121.26339 * 179.97438 * 5 4 3 7 7 C 1.36319 * 120.08557 * 179.97438 * 6 5 4 8 8 C 1.38906 * 121.05809 * 0.02564 * 7 6 5 9 9 C 1.38711 * 120.72327 * 0.02562 * 8 7 6 10 10 C 1.47442 * 120.33125 * 180.02562 * 9 8 7 11 11 O 1.21599 * 120.00338 * 139.82044 * 10 9 8 12 12 N 1.34782 * 119.99707 * 319.82742 * 10 9 8 13 13 C 1.47423 * 125.64787 * 4.87520 * 12 10 9 14 14 C 1.54911 * 104.83150 * 204.09553 * 13 12 10 15 15 C 1.55162 * 101.57914 * 322.99337 * 14 13 12 16 16 H 1.09000 * 110.71822 * 153.86508 * 15 14 13 17 17 N 1.46501 * 110.71777 * 277.13673 * 15 14 13 18 18 C 1.36944 * 119.99789 * 270.73557 * 17 15 14 19 19 H 1.07998 * 120.00152 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99422 * 180.02562 * 18 17 15 21 21 N 1.31623 * 119.99703 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00532 * 0.02562 * 20 18 17 23 23 H 1.48491 * 109.47246 * 89.99694 * 22 20 18 24 24 H 1.48491 * 109.47105 * 210.00232 * 22 20 18 25 25 H 1.48506 * 109.46527 * 329.99692 * 22 20 18 26 26 C 1.47024 * 125.64546 * 184.57277 * 12 10 9 27 27 H 1.09005 * 109.88198 * 59.55859 * 26 12 10 28 28 C 1.52999 * 109.88230 * 298.39288 * 26 12 10 29 29 C 1.41554 * 118.93986 * 0.02747 * 5 4 3 30 30 N 1.31239 * 119.15508 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47343 * 269.98133 * 1 2 3 32 32 H 1.08996 * 109.46957 * 29.98303 * 1 2 3 33 33 H 1.08999 * 109.46766 * 149.98122 * 1 2 3 34 34 H 1.08000 * 120.04326 * 359.97119 * 3 2 1 35 35 H 1.07996 * 120.92446 * 180.02562 * 4 3 2 36 36 H 1.07995 * 119.96102 * 359.97438 * 6 5 4 37 37 H 1.08003 * 119.47022 * 180.02562 * 7 6 5 38 38 H 1.08004 * 119.64021 * 179.97438 * 8 7 6 39 39 H 1.08996 * 110.37256 * 322.93530 * 13 12 10 40 40 H 1.08998 * 110.36607 * 85.26367 * 13 12 10 41 41 H 1.09002 * 111.00439 * 81.06403 * 14 13 12 42 42 H 1.08999 * 111.00635 * 204.88505 * 14 13 12 43 43 H 0.96990 * 120.00216 * 90.74261 * 17 15 14 44 44 H 0.97002 * 120.00081 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.47309 * 67.60263 * 28 26 12 46 46 H 1.08997 * 109.46915 * 187.60403 * 28 26 12 47 47 H 1.09003 * 109.46701 * 307.59964 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2339 -0.0005 5 6 4.2321 0.0013 -0.0005 6 6 5.6356 -0.0565 -0.0016 7 6 6.2699 -1.2631 -0.0010 8 6 5.5501 -2.4511 0.0001 9 6 4.1630 -2.4393 0.0001 10 6 3.4076 -3.7055 0.0019 11 8 2.4052 -3.8145 0.6814 12 7 3.8283 -4.7422 -0.7497 13 6 5.0741 -4.7830 -1.5369 14 6 4.8084 -5.8316 -2.6458 15 6 3.9621 -6.8844 -1.8824 16 1 3.3185 -7.4336 -2.5696 17 7 4.8265 -7.8011 -1.1349 18 6 5.2914 -8.9430 -1.7311 19 1 5.0211 -9.1675 -2.7523 20 6 6.1100 -9.8118 -1.0226 21 7 6.5564 -10.9096 -1.5953 22 14 6.5769 -9.4239 0.7440 23 1 5.5723 -10.0164 1.6631 24 1 7.9154 -9.9950 1.0391 25 1 6.6141 -7.9515 0.9341 26 6 3.1238 -6.0220 -0.9153 27 1 2.1346 -5.8485 -1.3390 28 6 2.9977 -6.7254 0.4375 29 6 3.4788 -1.1972 -0.0005 30 7 2.1463 -1.1461 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3633 0.8901 -0.5136 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6322 2.1436 -0.0005 35 1 4.0943 2.1675 -0.0001 36 1 6.2130 0.8562 -0.0028 37 1 7.3494 -1.2959 -0.0014 38 1 6.0761 -3.3944 0.0001 39 1 5.2762 -3.8071 -1.9783 40 1 5.9088 -5.0969 -0.9101 41 1 4.2408 -5.3956 -3.4679 42 1 5.7416 -6.2655 -3.0049 43 1 5.0695 -7.5994 -0.2179 44 1 7.1288 -11.5166 -1.1004 45 1 2.3257 -6.1576 1.0810 46 1 2.5979 -7.7285 0.2895 47 1 3.9799 -6.7911 0.9057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986414738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:00 Heat of formation + Delta-G solvation = 27.694724 kcal Electronic energy + Delta-G solvation = -29559.933067 eV Core-core repulsion = 25707.366229 eV Total energy + Delta-G solvation = -3852.566838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.12900 -41.08277 -38.92165 -38.14322 -35.86941 -34.56365 -33.58366 -32.95114 -32.37725 -31.63052 -30.41551 -28.85918 -26.99481 -25.42186 -25.11394 -24.60002 -23.45226 -23.01771 -21.28349 -20.20927 -19.81316 -19.22626 -18.35033 -17.77442 -17.36009 -17.07537 -16.46270 -15.96790 -15.88449 -15.74480 -15.64482 -15.16141 -14.99762 -14.74030 -14.48196 -14.37546 -14.31511 -13.93605 -13.89018 -13.74579 -13.36060 -13.26005 -13.13655 -13.01007 -12.99608 -12.58448 -12.52095 -12.41895 -12.29500 -12.17489 -11.97187 -11.73399 -11.64902 -11.48446 -11.00536 -10.98920 -10.27840 -9.73184 -9.68663 -9.32754 -9.25802 -8.01514 -5.34166 -0.79538 -0.20262 0.77386 1.34581 1.38152 1.43454 1.70422 1.85852 2.06626 2.46628 3.06519 3.18030 3.26540 3.36262 3.52549 3.63007 3.71235 3.74547 3.85723 3.95765 3.97475 4.13109 4.15726 4.20282 4.29784 4.32780 4.42553 4.48516 4.57636 4.66388 4.69611 4.72082 4.75003 4.85621 4.92453 4.96855 5.00146 5.06445 5.13317 5.15072 5.19999 5.22785 5.30533 5.34366 5.39514 5.58664 5.80138 5.83092 6.22353 6.49143 7.03734 7.07158 7.15121 7.82412 8.01495 9.19801 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.003049 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.227426 B = 9181.302431 C = 9814.320922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.144 3.856 3 C -0.176 4.176 4 C -0.044 4.044 5 C -0.133 4.133 6 C -0.054 4.054 7 C -0.131 4.131 8 C -0.059 4.059 9 C -0.143 4.143 10 C 0.572 3.428 11 O -0.558 6.558 12 N -0.609 5.609 13 C 0.105 3.895 14 C -0.147 4.147 15 C 0.171 3.829 16 H 0.077 0.923 17 N -0.740 5.740 18 C -0.220 4.220 19 H 0.067 0.933 20 C -0.055 4.055 21 N -0.980 5.980 22 Si 0.939 3.061 23 H -0.285 1.285 24 H -0.294 1.294 25 H -0.258 1.258 26 C 0.132 3.868 27 H 0.079 0.921 28 C -0.143 4.143 29 C 0.140 3.860 30 N -0.513 5.513 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.058 0.942 34 H 0.176 0.824 35 H 0.186 0.814 36 H 0.178 0.822 37 H 0.169 0.831 38 H 0.141 0.859 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.365 0.635 44 H 0.257 0.743 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.472 32.439 1.785 32.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.008 4.008 3 C -0.195 4.195 4 C -0.069 4.069 5 C -0.136 4.136 6 C -0.072 4.072 7 C -0.148 4.148 8 C -0.079 4.079 9 C -0.147 4.147 10 C 0.363 3.637 11 O -0.437 6.437 12 N -0.343 5.343 13 C -0.017 4.017 14 C -0.188 4.188 15 C 0.061 3.939 16 H 0.095 0.905 17 N -0.384 5.384 18 C -0.351 4.351 19 H 0.085 0.915 20 C -0.247 4.247 21 N -0.631 5.631 22 Si 0.767 3.233 23 H -0.212 1.212 24 H -0.221 1.221 25 H -0.183 1.183 26 C 0.028 3.972 27 H 0.097 0.903 28 C -0.202 4.202 29 C 0.017 3.983 30 N -0.223 5.223 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.077 0.923 34 H 0.193 0.807 35 H 0.203 0.797 36 H 0.195 0.805 37 H 0.187 0.813 38 H 0.159 0.841 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.101 0.899 43 H 0.201 0.799 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.087 0.913 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.402 31.407 2.034 31.779 hybrid contribution 0.690 -0.322 1.133 1.365 sum -3.711 31.085 3.167 31.466 Atomic orbital electron populations 1.20866 0.87369 1.04182 1.03822 1.22225 0.98620 0.88551 0.91372 1.22116 0.95647 0.99430 1.02300 1.21991 0.94594 0.97576 0.92724 1.19146 0.96049 0.93695 1.04663 1.21642 0.91614 1.00223 0.93762 1.21224 1.02229 0.90877 1.00495 1.21850 0.91392 1.01169 0.93469 1.19722 0.94445 0.91261 1.09244 1.18052 0.84043 0.82818 0.78830 1.90729 1.27404 1.83000 1.42530 1.48609 1.24023 1.14114 1.47513 1.22540 0.85771 1.00592 0.92788 1.23361 1.02092 0.96165 0.97146 1.21349 0.91125 0.89490 0.91888 0.90530 1.42841 1.58762 1.23255 1.13524 1.19023 1.22211 0.96455 0.97402 0.91480 1.25296 1.00969 0.96915 1.01518 1.69847 1.40506 1.14326 1.38400 0.85665 0.77232 0.78458 0.81918 1.21168 1.22095 1.18263 1.21831 0.96140 0.82902 0.96329 0.90318 1.21863 1.00889 1.00551 0.96866 1.18775 0.89545 0.92423 0.97547 1.67924 1.09122 1.30649 1.14560 0.89608 0.87172 0.92333 0.80659 0.79693 0.80489 0.81322 0.84097 0.88752 0.91363 0.89415 0.89880 0.79943 0.93411 0.92787 0.91322 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 10.15 71.23 0.72 -1.02 16 2 C 0.14 3.22 6.78 42.89 0.29 3.51 16 3 C -0.18 -2.45 9.64 22.13 0.21 -2.24 16 4 C -0.04 -0.55 9.90 22.52 0.22 -0.33 16 5 C -0.13 -2.57 5.74 -21.29 -0.12 -2.70 16 6 C -0.05 -0.69 9.75 22.37 0.22 -0.48 16 7 C -0.13 -1.90 9.93 21.98 0.22 -1.68 16 8 C -0.06 -1.30 7.92 22.54 0.18 -1.12 16 9 C -0.14 -4.30 5.46 -19.86 -0.11 -4.41 16 10 C 0.57 20.89 7.13 86.67 0.62 21.50 16 11 O -0.56 -24.42 15.16 -4.03 -0.06 -24.48 16 12 N -0.61 -20.32 3.06 -791.86 -2.43 -22.75 16 13 C 0.10 2.95 5.18 86.86 0.45 3.40 16 14 C -0.15 -4.48 6.77 31.99 0.22 -4.26 16 15 C 0.17 6.27 3.48 46.18 0.16 6.43 16 16 H 0.08 2.85 8.11 -2.39 -0.02 2.83 16 17 N -0.74 -33.09 4.40 -317.31 -1.40 -34.49 16 18 C -0.22 -11.95 10.45 84.03 0.88 -11.07 16 19 H 0.07 3.94 8.06 -2.91 -0.02 3.92 16 20 C -0.06 -3.18 5.50 84.86 0.47 -2.71 16 21 N -0.98 -61.61 13.97 21.65 0.30 -61.30 16 22 Si 0.94 45.43 27.74 68.60 1.90 47.33 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 25 H -0.26 -11.40 6.52 99.48 0.65 -10.75 16 26 C 0.13 4.66 3.45 45.34 0.16 4.82 16 27 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 28 C -0.14 -5.40 8.17 71.98 0.59 -4.81 16 29 C 0.14 4.05 6.58 40.62 0.27 4.31 16 30 N -0.51 -16.17 9.03 -176.10 -1.59 -17.76 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.11 0.98 8.07 -2.39 -0.02 0.96 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.18 0.98 8.06 -2.91 -0.02 0.95 16 35 H 0.19 0.59 8.06 -2.91 -0.02 0.56 16 36 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 37 H 0.17 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.14 2.96 5.81 -2.91 -0.02 2.95 16 39 H 0.09 2.20 6.73 -2.39 -0.02 2.18 16 40 H 0.07 1.94 7.31 -2.39 -0.02 1.92 16 41 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 43 H 0.37 16.38 3.55 -92.72 -0.33 16.05 16 44 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.05 2.10 6.96 -2.39 -0.02 2.08 16 46 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.04 1.66 6.54 -2.39 -0.02 1.64 16 Total: -1.00 -81.35 376.60 2.97 -78.37 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.61 Total: 27.93 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: 5.64 Total: 7.15 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -5.11 Total: -136.30 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.06 Total: -24.48 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.90 Total: 47.33 kcal Total: -81.35 2.97 -78.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986414738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.068 kcal (2) G-P(sol) polarization free energy of solvation -81.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds