Wall clock time and date at job start Tue Mar 31 2020 22:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36535 * 120.87462 * 2 1 4 4 C 1.40244 * 119.82248 * 180.02562 * 3 2 1 5 5 C 1.48272 * 119.24443 * 179.97438 * 4 3 2 6 6 O 1.21500 * 119.99838 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00145 * 179.97438 * 5 4 3 8 8 C 1.47429 * 125.64684 * 0.04216 * 7 5 4 9 9 C 1.54906 * 104.83044 * 204.09161 * 8 7 5 10 10 C 1.55150 * 101.58255 * 322.98719 * 9 8 7 11 11 H 1.09001 * 110.87634 * 277.07295 * 10 9 8 12 12 N 1.46505 * 110.72044 * 153.86571 * 10 9 8 13 13 C 1.36931 * 119.99788 * 91.47904 * 12 10 9 14 14 H 1.08002 * 120.00438 * 0.02562 * 13 12 10 15 15 C 1.38817 * 119.99680 * 179.72358 * 13 12 10 16 16 N 1.31614 * 119.99888 * 0.27479 * 15 13 12 17 17 Si 1.86803 * 119.99862 * 180.27671 * 15 13 12 18 18 H 1.48508 * 109.46872 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47141 * 119.99997 * 17 15 13 20 20 H 1.48498 * 109.47018 * 240.00044 * 17 15 13 21 21 C 1.47019 * 125.64806 * 179.97438 * 7 5 4 22 22 H 1.08999 * 110.01064 * 59.49178 * 21 7 5 23 23 C 1.52998 * 109.88647 * 298.39420 * 21 7 5 24 24 N 1.31900 * 121.51206 * 0.24932 * 4 3 2 25 25 C 1.33247 * 121.29850 * 359.48098 * 24 4 3 26 26 C 1.40835 * 120.97946 * 180.25879 * 25 24 4 27 27 C 1.35989 * 119.73161 * 180.25676 * 26 25 24 28 28 C 1.39441 * 121.08997 * 0.02562 * 27 26 25 29 29 C 1.36132 * 120.92010 * 359.93460 * 28 27 26 30 30 C 1.40426 * 119.65024 * 0.08802 * 29 28 27 31 31 H 1.08998 * 109.47728 * 90.00156 * 1 2 3 32 32 H 1.09000 * 109.46964 * 210.00319 * 1 2 3 33 33 H 1.09000 * 109.47461 * 330.00163 * 1 2 3 34 34 H 1.08002 * 120.09151 * 359.97438 * 3 2 1 35 35 H 1.09004 * 110.36263 * 322.92750 * 8 7 5 36 36 H 1.08995 * 110.36660 * 85.24908 * 8 7 5 37 37 H 1.09000 * 111.00550 * 204.91393 * 9 8 7 38 38 H 1.09000 * 111.00625 * 81.06327 * 9 8 7 39 39 H 0.97000 * 119.99792 * 271.47699 * 12 10 9 40 40 H 0.97005 * 119.99715 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.46953 * 302.19745 * 23 21 7 42 42 H 1.09008 * 109.46982 * 62.18980 * 23 21 7 43 43 H 1.08997 * 109.47268 * 182.19344 * 23 21 7 44 44 H 1.07997 * 120.13535 * 0.27318 * 26 25 24 45 45 H 1.08004 * 119.45812 * 180.02562 * 27 26 25 46 46 H 1.07993 * 119.54523 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.17455 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1719 0.0000 4 6 3.6099 1.1461 -0.0005 5 6 4.3579 2.4263 -0.0011 6 8 3.7558 3.4817 -0.0016 7 7 5.7056 2.4194 -0.0011 8 6 6.5586 1.2169 -0.0015 9 6 7.9030 1.6843 0.6099 10 6 8.0305 3.1156 0.0248 11 1 8.4464 3.0879 -0.9824 12 7 8.8477 3.9617 0.8980 13 6 10.1989 4.0519 0.6947 14 1 10.6620 3.4996 -0.1096 15 6 10.9724 4.8581 1.5186 16 7 10.4079 5.5315 2.4984 17 14 12.8145 4.9872 1.2364 18 1 13.1989 4.1378 0.0805 19 1 13.1742 6.4000 0.9545 20 1 13.5347 4.5257 2.4503 21 6 6.5686 3.6096 -0.0022 22 1 6.3666 4.2176 0.8797 23 6 6.3202 4.4315 -1.2686 24 7 4.2785 0.0092 -0.0060 25 6 3.6481 -1.1647 -0.0008 26 6 4.3688 -2.3747 -0.0012 27 6 3.6994 -3.5584 -0.0012 28 6 2.3055 -3.5974 -0.0013 29 6 1.5736 -2.4495 -0.0002 30 6 2.2292 -1.2077 -0.0007 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.6835 2.1162 -0.0004 35 1 6.1131 0.4356 0.6143 36 1 6.7091 0.8589 -1.0199 37 1 8.7251 1.0512 0.2762 38 1 7.8492 1.7105 1.6983 39 1 8.4317 4.4580 1.6202 40 1 10.9485 6.0946 3.0743 41 1 6.5066 3.8121 -2.1460 42 1 5.2863 4.7768 -1.2806 43 1 6.9905 5.2909 -1.2813 44 1 5.4487 -2.3625 -0.0012 45 1 4.2565 -4.4836 -0.0011 46 1 1.7995 -4.5514 -0.0017 47 1 0.4945 -2.4938 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986421759.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:45 Heat of formation + Delta-G solvation = 43.430593 kcal Electronic energy + Delta-G solvation = -28953.480798 eV Core-core repulsion = 25101.596319 eV Total energy + Delta-G solvation = -3851.884480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.36482 -39.77834 -37.68858 -36.90234 -35.14692 -34.02760 -31.75243 -30.98563 -30.68364 -30.63176 -29.01983 -28.13955 -25.19380 -25.11500 -23.86240 -22.96460 -22.47231 -21.38155 -20.23261 -19.26861 -18.25930 -17.84674 -17.18134 -16.76569 -16.08874 -15.61367 -15.31262 -15.00191 -14.77488 -14.53806 -14.39512 -13.94261 -13.70629 -13.55936 -13.41871 -13.35757 -13.13476 -12.91774 -12.68421 -12.52859 -12.10477 -12.03164 -11.94087 -11.72962 -11.69163 -11.45294 -11.12289 -10.99295 -10.82495 -10.54108 -10.48315 -10.28089 -10.13528 -9.89430 -9.67980 -9.40465 -9.08626 -8.88641 -8.52724 -8.31052 -6.99502 -5.79181 -3.09104 -0.06318 0.41304 1.64125 2.25600 3.04622 3.17819 3.42551 3.48196 3.50499 3.85026 3.88289 4.15601 4.33741 4.43333 4.50439 4.57346 4.77475 4.83044 4.90059 5.05323 5.14654 5.16454 5.20639 5.26769 5.38314 5.47205 5.55861 5.63679 5.65789 5.70640 5.71867 5.76971 5.81595 5.92942 6.04155 6.09254 6.12864 6.15055 6.17753 6.28909 6.42744 6.51112 6.53413 6.66136 6.69396 6.78807 6.99040 7.47620 7.68746 7.76984 8.28551 8.38363 9.49755 10.04754 10.39714 11.43175 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.002573 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.537717 B =10880.664541 C =11982.512201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.032 4.032 3 C -0.128 4.128 4 C 0.132 3.868 5 C 0.575 3.425 6 O -0.537 6.537 7 N -0.583 5.583 8 C 0.102 3.898 9 C -0.160 4.160 10 C 0.177 3.823 11 H 0.067 0.933 12 N -0.715 5.715 13 C -0.241 4.241 14 H 0.073 0.927 15 C -0.012 4.012 16 N -0.930 5.930 17 Si 0.908 3.092 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.292 1.292 21 C 0.123 3.877 22 H 0.080 0.920 23 C -0.154 4.154 24 N -0.439 5.439 25 C 0.124 3.876 26 C -0.083 4.083 27 C -0.106 4.106 28 C -0.111 4.111 29 C -0.103 4.103 30 C -0.089 4.089 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.097 0.903 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.385 0.615 40 H 0.255 0.745 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.140 0.860 45 H 0.131 0.869 46 H 0.127 0.873 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.594 -19.052 -6.544 28.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.040 4.040 3 C -0.149 4.149 4 C -0.022 4.022 5 C 0.361 3.639 6 O -0.414 6.414 7 N -0.314 5.314 8 C -0.021 4.021 9 C -0.201 4.201 10 C 0.065 3.935 11 H 0.085 0.915 12 N -0.355 5.355 13 C -0.372 4.372 14 H 0.091 0.909 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.739 3.261 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.219 1.219 21 C 0.020 3.980 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.151 5.151 25 C 0.001 3.999 26 C -0.102 4.102 27 C -0.126 4.126 28 C -0.129 4.129 29 C -0.121 4.121 30 C -0.091 4.091 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.168 0.832 35 H 0.115 0.885 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.220 0.780 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.090 0.910 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.145 0.855 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.841 -18.513 -6.606 27.929 hybrid contribution 0.099 0.155 0.194 0.267 sum -19.742 -18.358 -6.412 27.710 Atomic orbital electron populations 1.20869 0.89515 1.03778 1.03264 1.20120 0.96863 0.91667 0.95386 1.21611 0.93593 0.99680 0.99993 1.21391 0.91556 0.92238 0.96983 1.17508 0.81084 0.87192 0.78097 1.90762 1.67977 1.31140 1.51520 1.48402 1.04107 1.09746 1.69190 1.22702 0.90483 0.87638 1.01237 1.23626 0.94997 1.00103 1.01384 1.21256 0.87685 0.89490 0.95097 0.91464 1.42362 1.04644 1.53299 1.35176 1.19262 0.83417 1.22530 1.11963 0.90940 1.24766 0.98148 0.99701 0.98171 1.69678 1.34639 1.33164 1.20322 0.86113 0.85409 0.77334 0.77281 1.20500 1.21849 1.21870 1.22053 0.90893 0.85996 0.99089 0.90242 1.22044 1.02436 1.00229 0.96499 1.68231 1.38694 0.97309 1.10862 1.18977 0.89753 0.92340 0.98848 1.20918 1.00717 0.89922 0.98636 1.20939 0.94441 0.98134 0.99060 1.20986 0.94192 0.98526 0.99179 1.21015 1.00111 0.91141 0.99846 1.18836 0.94002 0.94279 1.01946 0.90064 0.90676 0.90336 0.83242 0.88489 0.91962 0.90671 0.90883 0.78017 0.93462 0.93091 0.92007 0.90985 0.84237 0.85103 0.85468 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.59 36.01 0.35 -0.38 16 2 C -0.03 -0.32 5.92 -104.30 -0.62 -0.94 16 3 C -0.13 -1.56 9.23 -39.44 -0.36 -1.93 16 4 C 0.13 1.92 6.73 -82.96 -0.56 1.36 16 5 C 0.57 9.87 7.63 -12.13 -0.09 9.78 16 6 O -0.54 -10.32 15.33 5.37 0.08 -10.24 16 7 N -0.58 -9.96 3.07 -163.96 -0.50 -10.47 16 8 C 0.10 1.57 5.92 -2.53 -0.01 1.55 16 9 C -0.16 -2.79 6.77 -24.59 -0.17 -2.96 16 10 C 0.18 3.51 3.14 -66.09 -0.21 3.30 16 11 H 0.07 1.34 7.80 -51.93 -0.40 0.93 16 12 N -0.71 -17.67 5.22 -51.65 -0.27 -17.94 16 13 C -0.24 -6.53 9.96 -15.06 -0.15 -6.68 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 17 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 C 0.12 2.29 3.21 -66.95 -0.22 2.08 16 22 H 0.08 1.64 7.71 -51.93 -0.40 1.24 16 23 C -0.15 -2.68 9.09 37.16 0.34 -2.34 16 24 N -0.44 -6.02 6.51 -7.54 -0.05 -6.07 16 25 C 0.12 1.47 6.61 -84.85 -0.56 0.91 16 26 C -0.08 -0.79 9.99 -39.41 -0.39 -1.19 16 27 C -0.11 -0.76 9.94 -39.94 -0.40 -1.16 16 28 C -0.11 -0.73 9.96 -39.89 -0.40 -1.13 16 29 C -0.10 -0.77 9.31 -39.52 -0.37 -1.14 16 30 C -0.09 -0.91 5.75 -106.72 -0.61 -1.53 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.35 6.51 -51.93 -0.34 0.01 16 33 H 0.08 0.44 8.10 -51.93 -0.42 0.01 16 34 H 0.15 1.72 7.60 -52.49 -0.40 1.33 16 35 H 0.10 1.43 5.88 -51.93 -0.31 1.13 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 39 H 0.39 10.28 7.56 -40.82 -0.31 9.97 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 1.10 6.90 -51.92 -0.36 0.74 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 45 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 46 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 47 H 0.13 0.66 6.44 -52.49 -0.34 0.32 16 LS Contribution 381.96 15.07 5.76 5.76 Total: -1.00 -32.36 381.96 -10.43 -42.79 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -6.62 Total: 9.05 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -4.53 Total: -2.82 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: -0.10 Total: -61.68 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.36 -10.43 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986421759.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.221 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds