Wall clock time and date at job start Tue Mar 31 2020 22:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.36535 * 120.87462 * 2 1 4 4 C 1.40244 * 119.82248 * 180.02562 * 3 2 1 5 5 C 1.48272 * 119.24443 * 179.97438 * 4 3 2 6 6 O 1.21500 * 119.99838 * 359.97438 * 5 4 3 7 7 N 1.34777 * 120.00145 * 179.97438 * 5 4 3 8 8 C 1.47429 * 125.64684 * 0.04216 * 7 5 4 9 9 C 1.54906 * 104.83044 * 204.09161 * 8 7 5 10 10 C 1.55150 * 101.58255 * 322.98719 * 9 8 7 11 11 H 1.09001 * 110.87634 * 277.07295 * 10 9 8 12 12 N 1.46505 * 110.72044 * 153.86571 * 10 9 8 13 13 C 1.36931 * 119.99788 * 91.47904 * 12 10 9 14 14 H 1.08002 * 120.00438 * 0.02562 * 13 12 10 15 15 C 1.38817 * 119.99680 * 179.72358 * 13 12 10 16 16 N 1.31614 * 119.99888 * 0.27479 * 15 13 12 17 17 Si 1.86803 * 119.99862 * 180.27671 * 15 13 12 18 18 H 1.48508 * 109.46872 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47141 * 119.99997 * 17 15 13 20 20 H 1.48498 * 109.47018 * 240.00044 * 17 15 13 21 21 C 1.47019 * 125.64806 * 179.97438 * 7 5 4 22 22 H 1.08999 * 110.01064 * 59.49178 * 21 7 5 23 23 C 1.52998 * 109.88647 * 298.39420 * 21 7 5 24 24 N 1.31900 * 121.51206 * 0.24932 * 4 3 2 25 25 C 1.33247 * 121.29850 * 359.48098 * 24 4 3 26 26 C 1.40835 * 120.97946 * 180.25879 * 25 24 4 27 27 C 1.35989 * 119.73161 * 180.25676 * 26 25 24 28 28 C 1.39441 * 121.08997 * 0.02562 * 27 26 25 29 29 C 1.36132 * 120.92010 * 359.93460 * 28 27 26 30 30 C 1.40426 * 119.65024 * 0.08802 * 29 28 27 31 31 H 1.08998 * 109.47728 * 90.00156 * 1 2 3 32 32 H 1.09000 * 109.46964 * 210.00319 * 1 2 3 33 33 H 1.09000 * 109.47461 * 330.00163 * 1 2 3 34 34 H 1.08002 * 120.09151 * 359.97438 * 3 2 1 35 35 H 1.09004 * 110.36263 * 322.92750 * 8 7 5 36 36 H 1.08995 * 110.36660 * 85.24908 * 8 7 5 37 37 H 1.09000 * 111.00550 * 204.91393 * 9 8 7 38 38 H 1.09000 * 111.00625 * 81.06327 * 9 8 7 39 39 H 0.97000 * 119.99792 * 271.47699 * 12 10 9 40 40 H 0.97005 * 119.99715 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.46953 * 302.19745 * 23 21 7 42 42 H 1.09008 * 109.46982 * 62.18980 * 23 21 7 43 43 H 1.08997 * 109.47268 * 182.19344 * 23 21 7 44 44 H 1.07997 * 120.13535 * 0.27318 * 26 25 24 45 45 H 1.08004 * 119.45812 * 180.02562 * 27 26 25 46 46 H 1.07993 * 119.54523 * 179.97438 * 28 27 26 47 47 H 1.08001 * 120.17455 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1719 0.0000 4 6 3.6099 1.1461 -0.0005 5 6 4.3579 2.4263 -0.0011 6 8 3.7558 3.4817 -0.0016 7 7 5.7056 2.4194 -0.0011 8 6 6.5586 1.2169 -0.0015 9 6 7.9030 1.6843 0.6099 10 6 8.0305 3.1156 0.0248 11 1 8.4464 3.0879 -0.9824 12 7 8.8477 3.9617 0.8980 13 6 10.1989 4.0519 0.6947 14 1 10.6620 3.4996 -0.1096 15 6 10.9724 4.8581 1.5186 16 7 10.4079 5.5315 2.4984 17 14 12.8145 4.9872 1.2364 18 1 13.1989 4.1378 0.0805 19 1 13.1742 6.4000 0.9545 20 1 13.5347 4.5257 2.4503 21 6 6.5686 3.6096 -0.0022 22 1 6.3666 4.2176 0.8797 23 6 6.3202 4.4315 -1.2686 24 7 4.2785 0.0092 -0.0060 25 6 3.6481 -1.1647 -0.0008 26 6 4.3688 -2.3747 -0.0012 27 6 3.6994 -3.5584 -0.0012 28 6 2.3055 -3.5974 -0.0013 29 6 1.5736 -2.4495 -0.0002 30 6 2.2292 -1.2077 -0.0007 31 1 -0.3634 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.6835 2.1162 -0.0004 35 1 6.1131 0.4356 0.6143 36 1 6.7091 0.8589 -1.0199 37 1 8.7251 1.0512 0.2762 38 1 7.8492 1.7105 1.6983 39 1 8.4317 4.4580 1.6202 40 1 10.9485 6.0946 3.0743 41 1 6.5066 3.8121 -2.1460 42 1 5.2863 4.7768 -1.2806 43 1 6.9905 5.2909 -1.2813 44 1 5.4487 -2.3625 -0.0012 45 1 4.2565 -4.4836 -0.0011 46 1 1.7995 -4.5514 -0.0017 47 1 0.4945 -2.4938 0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986421759.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:44 Heat of formation + Delta-G solvation = 24.779350 kcal Electronic energy + Delta-G solvation = -28954.289577 eV Core-core repulsion = 25101.596319 eV Total energy + Delta-G solvation = -3852.693258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.24033 -41.04153 -38.98978 -37.83451 -36.11581 -35.67448 -33.41207 -32.38639 -31.76577 -31.32446 -30.62357 -28.78993 -26.87079 -26.19993 -24.80828 -24.52748 -23.65697 -22.20725 -21.72028 -20.56021 -19.24663 -18.99760 -18.71152 -17.78734 -17.52633 -16.69697 -16.56900 -16.27108 -15.80181 -15.56122 -15.41374 -15.26678 -15.10581 -14.82414 -14.57561 -14.33446 -14.12445 -13.98339 -13.94740 -13.61652 -13.32700 -13.15975 -12.99744 -12.96137 -12.74956 -12.70312 -12.58978 -12.40760 -12.32660 -12.16410 -12.06640 -11.73658 -11.63755 -11.30094 -11.19227 -10.96463 -10.38765 -9.92213 -9.65493 -9.19974 -9.03220 -7.94209 -5.24490 -0.86227 -0.35609 0.91678 1.33271 1.49125 1.49927 1.59996 1.75675 2.18932 2.56866 2.87146 3.06098 3.36717 3.45607 3.52876 3.70653 3.72662 3.75518 3.83888 3.99583 4.11786 4.18249 4.22683 4.32529 4.34632 4.40000 4.48312 4.50389 4.54277 4.64278 4.65521 4.75301 4.81566 4.96011 5.00155 5.03053 5.06289 5.11774 5.15616 5.18720 5.20945 5.33843 5.41839 5.42632 5.48240 5.53600 5.54821 5.88347 6.25670 6.39717 6.57782 6.97676 7.32248 8.02960 8.28132 9.29587 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018920 B = 0.002573 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.537717 B =10880.664541 C =11982.512201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.020 4.020 3 C -0.150 4.150 4 C 0.105 3.895 5 C 0.571 3.429 6 O -0.568 6.568 7 N -0.588 5.588 8 C 0.117 3.883 9 C -0.150 4.150 10 C 0.174 3.826 11 H 0.074 0.926 12 N -0.728 5.728 13 C -0.235 4.235 14 H 0.083 0.917 15 C -0.077 4.077 16 N -0.972 5.972 17 Si 0.975 3.025 18 H -0.262 1.262 19 H -0.296 1.296 20 H -0.295 1.295 21 C 0.128 3.872 22 H 0.050 0.950 23 C -0.143 4.143 24 N -0.453 5.453 25 C 0.099 3.901 26 C -0.107 4.107 27 C -0.092 4.092 28 C -0.102 4.102 29 C -0.104 4.104 30 C -0.100 4.100 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.146 0.854 35 H 0.106 0.894 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.053 0.947 39 H 0.371 0.629 40 H 0.250 0.750 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.141 0.859 45 H 0.161 0.839 46 H 0.164 0.836 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.063 -23.160 -7.885 32.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.028 4.028 3 C -0.171 4.171 4 C -0.047 4.047 5 C 0.360 3.640 6 O -0.447 6.447 7 N -0.319 5.319 8 C -0.006 4.006 9 C -0.191 4.191 10 C 0.064 3.936 11 H 0.092 0.908 12 N -0.366 5.366 13 C -0.367 4.367 14 H 0.101 0.899 15 C -0.269 4.269 16 N -0.622 5.622 17 Si 0.804 3.196 18 H -0.186 1.186 19 H -0.224 1.224 20 H -0.223 1.223 21 C 0.024 3.976 22 H 0.069 0.931 23 C -0.201 4.201 24 N -0.166 5.166 25 C -0.025 4.025 26 C -0.126 4.126 27 C -0.112 4.112 28 C -0.120 4.120 29 C -0.122 4.122 30 C -0.102 4.102 31 H 0.115 0.885 32 H 0.116 0.884 33 H 0.100 0.900 34 H 0.163 0.837 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.072 0.928 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.159 0.841 45 H 0.178 0.822 46 H 0.182 0.818 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -21.324 -22.674 -7.991 32.135 hybrid contribution 0.409 1.186 0.585 1.384 sum -20.916 -21.488 -7.406 30.888 Atomic orbital electron populations 1.20998 0.86574 1.05114 1.04599 1.20531 0.98762 0.90646 0.92904 1.21613 0.92759 1.00682 1.02033 1.21010 0.92211 0.91283 1.00168 1.18024 0.80874 0.88147 0.76993 1.90721 1.68517 1.32627 1.52844 1.48441 1.04375 1.09494 1.69552 1.22676 0.88740 0.87030 1.02111 1.23461 0.96890 0.98537 1.00166 1.21406 0.87595 0.90029 0.94586 0.90794 1.42519 1.04539 1.54038 1.35553 1.19666 0.84445 1.21285 1.11293 0.89870 1.25597 1.02540 1.00241 0.98484 1.69846 1.36041 1.34602 1.21729 0.85053 0.80165 0.77016 0.77392 1.18572 1.22366 1.22266 1.21797 0.90682 0.86603 0.98500 0.93149 1.21931 1.01758 0.99964 0.96462 1.68034 1.39427 0.97721 1.11392 1.19392 0.91098 0.92217 0.99774 1.21088 1.01114 0.90036 1.00323 1.21371 0.95218 0.98292 0.96311 1.21478 0.93944 0.99815 0.96749 1.21389 1.01770 0.90059 0.99017 1.19146 0.93568 0.95697 1.01832 0.88477 0.88414 0.89953 0.83667 0.87643 0.90310 0.89194 0.92805 0.79684 0.94093 0.91504 0.92666 0.91734 0.84084 0.82177 0.81818 0.82027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 9.59 71.24 0.68 -0.42 16 2 C -0.02 -0.38 5.92 -19.66 -0.12 -0.49 16 3 C -0.15 -3.75 9.23 22.36 0.21 -3.55 16 4 C 0.11 3.18 6.73 42.29 0.28 3.46 16 5 C 0.57 20.64 7.63 86.91 0.66 21.31 16 6 O -0.57 -23.22 15.33 -3.71 -0.06 -23.28 16 7 N -0.59 -20.82 3.07 -790.94 -2.42 -23.24 16 8 C 0.12 3.57 5.92 86.85 0.51 4.09 16 9 C -0.15 -5.25 6.77 31.98 0.22 -5.04 16 10 C 0.17 7.03 3.14 46.18 0.15 7.17 16 11 H 0.07 2.91 7.80 -2.39 -0.02 2.89 16 12 N -0.73 -37.07 5.22 -317.31 -1.66 -38.73 16 13 C -0.24 -12.88 9.96 84.04 0.84 -12.04 16 14 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 15 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 16 N -0.97 -60.23 13.06 21.65 0.28 -59.94 16 17 Si 0.97 46.07 29.55 68.60 2.03 48.09 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 20 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 21 C 0.13 5.01 3.21 45.34 0.15 5.15 16 22 H 0.05 2.25 7.71 -2.39 -0.02 2.23 16 23 C -0.14 -5.15 9.09 71.98 0.65 -4.49 16 24 N -0.45 -12.55 6.51 -177.77 -1.16 -13.71 16 25 C 0.10 2.25 6.61 40.48 0.27 2.51 16 26 C -0.11 -1.83 9.99 22.38 0.22 -1.61 16 27 C -0.09 -0.98 9.94 22.04 0.22 -0.76 16 28 C -0.10 -0.85 9.96 22.07 0.22 -0.63 16 29 C -0.10 -1.14 9.31 22.31 0.21 -0.93 16 30 C -0.10 -1.86 5.75 -21.22 -0.12 -1.98 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.49 6.51 -2.39 -0.02 0.48 16 33 H 0.08 0.75 8.10 -2.39 -0.02 0.73 16 34 H 0.15 3.58 7.60 -2.91 -0.02 3.56 16 35 H 0.11 3.13 5.88 -2.38 -0.01 3.11 16 36 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.37 20.84 7.56 -92.71 -0.70 20.13 16 40 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.05 2.05 6.90 -2.38 -0.02 2.03 16 43 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 45 H 0.16 0.74 8.06 -2.91 -0.02 0.71 16 46 H 0.16 0.23 8.06 -2.91 -0.02 0.21 16 47 H 0.16 0.74 6.44 -2.91 -0.02 0.72 16 Total: -1.00 -73.64 381.96 3.03 -70.61 By element: Atomic # 1 Polarization: 32.07 SS G_CDS: 0.30 Total: 32.37 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: 5.72 Total: 7.83 kcal Atomic # 7 Polarization: -130.66 SS G_CDS: -4.96 Total: -135.62 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.06 Total: -23.28 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -73.64 3.03 -70.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986421759.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.389 kcal (2) G-P(sol) polarization free energy of solvation -73.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds