Wall clock time and date at job start Tue Mar 31 2020 22:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36540 * 120.87762 * 2 1 4 4 C 1.40244 * 119.82015 * 180.02562 * 3 2 1 5 5 C 1.48266 * 119.24354 * 179.97438 * 4 3 2 6 6 O 1.21500 * 119.99992 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00358 * 179.97438 * 5 4 3 8 8 C 1.47435 * 125.64639 * 0.04656 * 7 5 4 9 9 C 1.54904 * 104.83391 * 204.08996 * 8 7 5 10 10 C 1.55164 * 101.58098 * 322.99259 * 9 8 7 11 11 H 1.09002 * 110.72127 * 153.86399 * 10 9 8 12 12 N 1.46502 * 110.86896 * 277.06824 * 10 9 8 13 13 C 1.36936 * 119.99708 * 271.04666 * 12 10 9 14 14 H 1.07999 * 120.00238 * 0.02562 * 13 12 10 15 15 C 1.38813 * 119.99665 * 180.02562 * 13 12 10 16 16 N 1.31617 * 120.00454 * 0.02562 * 15 13 12 17 17 Si 1.86812 * 119.99766 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46836 * 90.00310 * 17 15 13 19 19 H 1.48495 * 109.46815 * 210.00227 * 17 15 13 20 20 H 1.48496 * 109.47060 * 330.00266 * 17 15 13 21 21 C 1.47022 * 125.65270 * 180.02562 * 7 5 4 22 22 H 1.09002 * 109.87665 * 59.56208 * 21 7 5 23 23 C 1.52998 * 110.01189 * 298.47143 * 21 7 5 24 24 N 1.31909 * 121.51312 * 0.27492 * 4 3 2 25 25 C 1.33246 * 121.30078 * 359.44071 * 24 4 3 26 26 C 1.40829 * 120.98314 * 180.27361 * 25 24 4 27 27 C 1.35989 * 119.73272 * 180.26849 * 26 25 24 28 28 C 1.39435 * 121.08840 * 0.02562 * 27 26 25 29 29 C 1.36132 * 120.92210 * 0.02562 * 28 27 26 30 30 C 1.40420 * 119.64791 * 359.96311 * 29 28 27 31 31 H 1.08995 * 109.46967 * 90.00084 * 1 2 3 32 32 H 1.08992 * 109.47448 * 210.00634 * 1 2 3 33 33 H 1.09007 * 109.47243 * 330.00362 * 1 2 3 34 34 H 1.07998 * 120.09103 * 359.97438 * 3 2 1 35 35 H 1.08997 * 110.36223 * 322.93214 * 8 7 5 36 36 H 1.09002 * 110.36419 * 85.14037 * 8 7 5 37 37 H 1.08995 * 111.00398 * 204.91709 * 9 8 7 38 38 H 1.09001 * 111.00339 * 81.06166 * 9 8 7 39 39 H 0.96994 * 119.99917 * 91.05446 * 12 10 9 40 40 H 0.96997 * 120.00116 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.47232 * 302.11458 * 23 21 7 42 42 H 1.09004 * 109.46916 * 62.11104 * 23 21 7 43 43 H 1.08994 * 109.47183 * 182.11422 * 23 21 7 44 44 H 1.07999 * 120.13307 * 0.29579 * 26 25 24 45 45 H 1.08001 * 119.45759 * 179.97438 * 27 26 25 46 46 H 1.08007 * 119.54041 * 180.02562 * 28 27 26 47 47 H 1.08002 * 120.17228 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1719 0.0000 4 6 3.6100 1.1460 -0.0005 5 6 4.3580 2.4261 -0.0011 6 8 3.7561 3.4815 -0.0006 7 7 5.7057 2.4191 -0.0011 8 6 6.5587 1.2166 -0.0016 9 6 7.9032 1.6838 0.6098 10 6 8.0307 3.1152 0.0248 11 1 8.6388 3.7447 0.6746 12 7 8.5897 3.0780 -1.3288 13 6 9.9461 3.1252 -1.5108 14 1 10.6037 3.1895 -0.6566 15 6 10.4758 3.0904 -2.7934 16 7 9.6745 3.0126 -3.8346 17 14 12.3263 3.1542 -3.0418 18 1 12.8728 1.7734 -3.0465 19 1 12.6292 3.8109 -4.3387 20 1 12.9475 3.9287 -1.9376 21 6 6.5689 3.6093 -0.0011 22 1 6.3661 4.2142 0.8827 23 6 6.3215 4.4355 -1.2648 24 7 4.2786 0.0089 -0.0065 25 6 3.6481 -1.1649 -0.0011 26 6 4.3686 -2.3749 -0.0017 27 6 3.6992 -3.5586 -0.0016 28 6 2.3054 -3.5974 -0.0015 29 6 1.5736 -2.4495 -0.0019 30 6 2.2292 -1.2078 -0.0018 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8898 0.5139 33 1 -0.3634 0.8901 0.5138 34 1 1.6837 2.1162 -0.0004 35 1 6.1131 0.4353 0.6141 36 1 6.7076 0.8575 -1.0199 37 1 8.7251 1.0506 0.2759 38 1 7.8493 1.7099 1.6982 39 1 7.9991 3.0200 -2.0960 40 1 10.0446 2.9887 -4.7309 41 1 6.5086 3.8193 -2.1443 42 1 5.2877 4.7809 -1.2765 43 1 6.9918 5.2949 -1.2741 44 1 5.4486 -2.3628 -0.0017 45 1 4.2562 -4.4838 -0.0025 46 1 1.7992 -4.5515 -0.0010 47 1 0.4944 -2.4937 -0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986421760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:49 Heat of formation + Delta-G solvation = 49.565636 kcal Electronic energy + Delta-G solvation = -29355.407019 eV Core-core repulsion = 25503.788575 eV Total energy + Delta-G solvation = -3851.618444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.28445 -39.74160 -37.69697 -36.84377 -35.07514 -33.86187 -31.68876 -30.87737 -30.60358 -30.56692 -28.77230 -28.06293 -25.15758 -25.03631 -23.78938 -23.45912 -22.37867 -21.30676 -20.00696 -18.81779 -18.16698 -17.77259 -17.33295 -16.65724 -16.07259 -15.55654 -15.24464 -14.96644 -14.64947 -14.47015 -14.31384 -13.87129 -13.78278 -13.59995 -13.34821 -13.23234 -13.06197 -12.77118 -12.59057 -12.46915 -12.17843 -11.92506 -11.85709 -11.64195 -11.59657 -11.15722 -10.94597 -10.90184 -10.73831 -10.54979 -10.41759 -10.26888 -10.09543 -9.83853 -9.56121 -9.28440 -9.00701 -8.89166 -8.44788 -8.20715 -6.97911 -5.78035 -3.07241 0.01962 0.49147 1.72257 2.33441 3.14667 3.26457 3.42925 3.48431 3.50052 3.94642 3.96553 4.23184 4.41707 4.50715 4.57687 4.58008 4.85105 4.90776 4.97243 5.12456 5.21646 5.22907 5.25817 5.31762 5.44666 5.56519 5.61287 5.67754 5.71989 5.76384 5.82752 5.84603 5.87627 5.98284 6.11594 6.15234 6.17396 6.25249 6.39732 6.44432 6.53203 6.59796 6.64768 6.68727 6.86674 6.91671 7.06427 7.57005 7.69747 7.86244 8.36725 8.40543 9.51817 10.07939 10.43130 11.44289 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.002993 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.871294 B = 9352.568436 C =10508.660929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.034 4.034 3 C -0.128 4.128 4 C 0.131 3.869 5 C 0.575 3.425 6 O -0.541 6.541 7 N -0.582 5.582 8 C 0.109 3.891 9 C -0.164 4.164 10 C 0.172 3.828 11 H 0.068 0.932 12 N -0.714 5.714 13 C -0.241 4.241 14 H 0.072 0.928 15 C -0.011 4.011 16 N -0.931 5.931 17 Si 0.907 3.093 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.282 1.282 21 C 0.124 3.876 22 H 0.073 0.927 23 C -0.150 4.150 24 N -0.436 5.436 25 C 0.124 3.876 26 C -0.082 4.082 27 C -0.107 4.107 28 C -0.111 4.111 29 C -0.104 4.104 30 C -0.089 4.089 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.149 0.851 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.388 0.612 40 H 0.255 0.745 41 H 0.066 0.934 42 H 0.054 0.946 43 H 0.068 0.932 44 H 0.140 0.860 45 H 0.131 0.869 46 H 0.127 0.873 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.560 -12.331 10.099 24.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.042 4.042 3 C -0.149 4.149 4 C -0.022 4.022 5 C 0.361 3.639 6 O -0.418 6.418 7 N -0.313 5.313 8 C -0.013 4.013 9 C -0.205 4.205 10 C 0.060 3.940 11 H 0.086 0.914 12 N -0.356 5.356 13 C -0.372 4.372 14 H 0.089 0.911 15 C -0.207 4.207 16 N -0.579 5.579 17 Si 0.738 3.262 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.208 1.208 21 C 0.021 3.979 22 H 0.091 0.909 23 C -0.208 4.208 24 N -0.148 5.148 25 C 0.001 3.999 26 C -0.101 4.101 27 C -0.127 4.127 28 C -0.129 4.129 29 C -0.122 4.122 30 C -0.091 4.091 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.167 0.833 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.225 0.775 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.145 0.855 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.809 -11.786 10.064 23.608 hybrid contribution 0.067 -0.182 -0.570 0.602 sum -17.742 -11.968 9.494 23.412 Atomic orbital electron populations 1.20860 0.89563 1.03654 1.03280 1.20112 0.96818 0.91686 0.95550 1.21599 0.93603 0.99619 1.00043 1.21392 0.91532 0.92302 0.97012 1.17486 0.81121 0.87164 0.78096 1.90745 1.68066 1.31135 1.51898 1.48498 1.04104 1.09806 1.68861 1.22618 0.89602 0.87083 1.01973 1.23580 0.96950 1.01292 0.98718 1.21197 0.89929 0.93524 0.89355 0.91410 1.42568 1.04637 1.87530 1.00912 1.19234 0.83076 1.42799 0.92125 0.91051 1.24741 0.97643 1.02803 0.95517 1.69663 1.33353 1.57191 0.97651 0.86199 0.85408 0.77496 0.77108 1.21768 1.21857 1.20751 1.22074 0.90749 0.86184 0.98883 0.90941 1.21925 1.01154 1.00236 0.97457 1.68252 1.38677 0.97313 1.10607 1.18980 0.89733 0.92361 0.98811 1.20940 1.00796 0.89933 0.98384 1.20933 0.94425 0.98134 0.99163 1.20980 0.94191 0.98495 0.99192 1.21001 1.00059 0.91151 0.99997 1.18835 0.94002 0.94274 1.01958 0.90063 0.90724 0.90415 0.83300 0.88880 0.91270 0.89531 0.92302 0.77504 0.93475 0.91560 0.92688 0.91299 0.84191 0.85112 0.85501 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 9.59 36.01 0.35 -0.45 16 2 C -0.03 -0.36 5.92 -104.30 -0.62 -0.98 16 3 C -0.13 -1.67 9.23 -39.44 -0.36 -2.03 16 4 C 0.13 2.04 6.73 -82.96 -0.56 1.48 16 5 C 0.58 10.31 7.64 -12.14 -0.09 10.22 16 6 O -0.54 -10.61 15.33 5.37 0.08 -10.53 16 7 N -0.58 -10.43 3.07 -163.96 -0.50 -10.93 16 8 C 0.11 1.88 5.90 -2.53 -0.01 1.86 16 9 C -0.16 -2.84 6.78 -24.58 -0.17 -3.01 16 10 C 0.17 3.38 3.46 -66.09 -0.23 3.15 16 11 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 12 N -0.71 -17.32 4.62 -51.65 -0.24 -17.56 16 13 C -0.24 -6.47 9.97 -15.06 -0.15 -6.62 16 14 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 15 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 16 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 17 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.12 2.30 3.42 -66.95 -0.23 2.07 16 22 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 23 C -0.15 -2.94 8.48 37.16 0.31 -2.62 16 24 N -0.44 -6.57 6.52 -7.54 -0.05 -6.62 16 25 C 0.12 1.63 6.61 -84.85 -0.56 1.07 16 26 C -0.08 -0.89 9.99 -39.41 -0.39 -1.28 16 27 C -0.11 -0.89 9.94 -39.94 -0.40 -1.29 16 28 C -0.11 -0.83 9.95 -39.89 -0.40 -1.23 16 29 C -0.10 -0.87 9.31 -39.52 -0.37 -1.24 16 30 C -0.09 -1.00 5.75 -106.72 -0.61 -1.61 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.39 6.51 -51.93 -0.34 0.05 16 33 H 0.08 0.47 8.10 -51.93 -0.42 0.04 16 34 H 0.15 1.82 7.60 -52.49 -0.40 1.42 16 35 H 0.09 1.47 5.88 -51.93 -0.31 1.17 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.39 10.17 5.58 -40.82 -0.23 9.95 16 40 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.07 1.45 6.21 -51.93 -0.32 1.13 16 42 H 0.05 1.06 6.91 -51.93 -0.36 0.71 16 43 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 47 H 0.13 0.76 6.44 -52.49 -0.34 0.42 16 LS Contribution 378.11 15.07 5.70 5.70 Total: -1.00 -31.97 378.11 -10.38 -42.35 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -6.48 Total: 10.46 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -4.59 Total: -2.91 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.07 Total: -62.11 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.08 Total: -10.53 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.97 -10.38 -42.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986421760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.918 kcal (2) G-P(sol) polarization free energy of solvation -31.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds