Wall clock time and date at job start Tue Mar 31 2020 22:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36540 * 120.87762 * 2 1 4 4 C 1.40244 * 119.82015 * 180.02562 * 3 2 1 5 5 C 1.48266 * 119.24354 * 179.97438 * 4 3 2 6 6 O 1.21500 * 119.99992 * 0.02562 * 5 4 3 7 7 N 1.34774 * 120.00358 * 179.97438 * 5 4 3 8 8 C 1.47435 * 125.64639 * 0.04656 * 7 5 4 9 9 C 1.54904 * 104.83391 * 204.08996 * 8 7 5 10 10 C 1.55164 * 101.58098 * 322.99259 * 9 8 7 11 11 H 1.09002 * 110.72127 * 153.86399 * 10 9 8 12 12 N 1.46502 * 110.86896 * 277.06824 * 10 9 8 13 13 C 1.36936 * 119.99708 * 271.04666 * 12 10 9 14 14 H 1.07999 * 120.00238 * 0.02562 * 13 12 10 15 15 C 1.38813 * 119.99665 * 180.02562 * 13 12 10 16 16 N 1.31617 * 120.00454 * 0.02562 * 15 13 12 17 17 Si 1.86812 * 119.99766 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46836 * 90.00310 * 17 15 13 19 19 H 1.48495 * 109.46815 * 210.00227 * 17 15 13 20 20 H 1.48496 * 109.47060 * 330.00266 * 17 15 13 21 21 C 1.47022 * 125.65270 * 180.02562 * 7 5 4 22 22 H 1.09002 * 109.87665 * 59.56208 * 21 7 5 23 23 C 1.52998 * 110.01189 * 298.47143 * 21 7 5 24 24 N 1.31909 * 121.51312 * 0.27492 * 4 3 2 25 25 C 1.33246 * 121.30078 * 359.44071 * 24 4 3 26 26 C 1.40829 * 120.98314 * 180.27361 * 25 24 4 27 27 C 1.35989 * 119.73272 * 180.26849 * 26 25 24 28 28 C 1.39435 * 121.08840 * 0.02562 * 27 26 25 29 29 C 1.36132 * 120.92210 * 0.02562 * 28 27 26 30 30 C 1.40420 * 119.64791 * 359.96311 * 29 28 27 31 31 H 1.08995 * 109.46967 * 90.00084 * 1 2 3 32 32 H 1.08992 * 109.47448 * 210.00634 * 1 2 3 33 33 H 1.09007 * 109.47243 * 330.00362 * 1 2 3 34 34 H 1.07998 * 120.09103 * 359.97438 * 3 2 1 35 35 H 1.08997 * 110.36223 * 322.93214 * 8 7 5 36 36 H 1.09002 * 110.36419 * 85.14037 * 8 7 5 37 37 H 1.08995 * 111.00398 * 204.91709 * 9 8 7 38 38 H 1.09001 * 111.00339 * 81.06166 * 9 8 7 39 39 H 0.96994 * 119.99917 * 91.05446 * 12 10 9 40 40 H 0.96997 * 120.00116 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.47232 * 302.11458 * 23 21 7 42 42 H 1.09004 * 109.46916 * 62.11104 * 23 21 7 43 43 H 1.08994 * 109.47183 * 182.11422 * 23 21 7 44 44 H 1.07999 * 120.13307 * 0.29579 * 26 25 24 45 45 H 1.08001 * 119.45759 * 179.97438 * 27 26 25 46 46 H 1.08007 * 119.54041 * 180.02562 * 28 27 26 47 47 H 1.08002 * 120.17228 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1719 0.0000 4 6 3.6100 1.1460 -0.0005 5 6 4.3580 2.4261 -0.0011 6 8 3.7561 3.4815 -0.0006 7 7 5.7057 2.4191 -0.0011 8 6 6.5587 1.2166 -0.0016 9 6 7.9032 1.6838 0.6098 10 6 8.0307 3.1152 0.0248 11 1 8.6388 3.7447 0.6746 12 7 8.5897 3.0780 -1.3288 13 6 9.9461 3.1252 -1.5108 14 1 10.6037 3.1895 -0.6566 15 6 10.4758 3.0904 -2.7934 16 7 9.6745 3.0126 -3.8346 17 14 12.3263 3.1542 -3.0418 18 1 12.8728 1.7734 -3.0465 19 1 12.6292 3.8109 -4.3387 20 1 12.9475 3.9287 -1.9376 21 6 6.5689 3.6093 -0.0011 22 1 6.3661 4.2142 0.8827 23 6 6.3215 4.4355 -1.2648 24 7 4.2786 0.0089 -0.0065 25 6 3.6481 -1.1649 -0.0011 26 6 4.3686 -2.3749 -0.0017 27 6 3.6992 -3.5586 -0.0016 28 6 2.3054 -3.5974 -0.0015 29 6 1.5736 -2.4495 -0.0019 30 6 2.2292 -1.2078 -0.0018 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8898 0.5139 33 1 -0.3634 0.8901 0.5138 34 1 1.6837 2.1162 -0.0004 35 1 6.1131 0.4353 0.6141 36 1 6.7076 0.8575 -1.0199 37 1 8.7251 1.0506 0.2759 38 1 7.8493 1.7099 1.6982 39 1 7.9991 3.0200 -2.0960 40 1 10.0446 2.9887 -4.7309 41 1 6.5086 3.8193 -2.1443 42 1 5.2877 4.7809 -1.2765 43 1 6.9918 5.2949 -1.2741 44 1 5.4486 -2.3628 -0.0017 45 1 4.2562 -4.4838 -0.0025 46 1 1.7992 -4.5515 -0.0010 47 1 0.4944 -2.4937 -0.0023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986421760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:48 Heat of formation + Delta-G solvation = 31.545424 kcal Electronic energy + Delta-G solvation = -29356.188434 eV Core-core repulsion = 25503.788575 eV Total energy + Delta-G solvation = -3852.399859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.24112 -41.07025 -39.05398 -37.83733 -36.04490 -35.56867 -33.38357 -32.31606 -31.77368 -31.32808 -30.44773 -28.78835 -26.76676 -26.21837 -25.38745 -24.55983 -23.62906 -22.20759 -21.39664 -20.20783 -19.40228 -19.02777 -18.70758 -17.79076 -17.52909 -16.73638 -16.55299 -16.16132 -15.80622 -15.67450 -15.53748 -15.23385 -15.11736 -14.74026 -14.41790 -14.29666 -14.16491 -13.98125 -13.94139 -13.82046 -13.28885 -13.00410 -12.99906 -12.85244 -12.72882 -12.66350 -12.57871 -12.33837 -12.28843 -12.22037 -12.04850 -11.71704 -11.48918 -11.27153 -11.19814 -10.93268 -10.36262 -9.91913 -9.63605 -9.21205 -8.99683 -7.91450 -5.20262 -0.86182 -0.36150 0.90819 1.33402 1.49522 1.50642 1.59033 1.82023 2.19543 2.57912 2.89102 3.05541 3.38064 3.46109 3.52312 3.72537 3.74235 3.80781 3.86404 3.94194 4.12116 4.21470 4.23676 4.31664 4.32813 4.41049 4.48049 4.50516 4.57589 4.64419 4.75610 4.78257 4.82715 4.98172 4.99685 5.05686 5.07823 5.11601 5.15539 5.18887 5.30453 5.37801 5.40458 5.42217 5.47448 5.53602 5.56877 5.87532 6.29295 6.41750 6.58682 6.99907 7.36349 8.09493 8.34107 9.32095 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.002993 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.871294 B = 9352.568436 C =10508.660929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.020 4.020 3 C -0.149 4.149 4 C 0.103 3.897 5 C 0.571 3.429 6 O -0.565 6.565 7 N -0.586 5.586 8 C 0.123 3.877 9 C -0.151 4.151 10 C 0.165 3.835 11 H 0.078 0.922 12 N -0.725 5.725 13 C -0.234 4.234 14 H 0.082 0.918 15 C -0.075 4.075 16 N -0.971 5.971 17 Si 0.972 3.028 18 H -0.289 1.289 19 H -0.301 1.301 20 H -0.268 1.268 21 C 0.128 3.872 22 H 0.089 0.911 23 C -0.136 4.136 24 N -0.458 5.458 25 C 0.098 3.902 26 C -0.111 4.111 27 C -0.092 4.092 28 C -0.102 4.102 29 C -0.102 4.102 30 C -0.101 4.101 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.149 0.851 35 H 0.109 0.891 36 H 0.040 0.960 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.375 0.625 40 H 0.249 0.751 41 H 0.037 0.963 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.135 0.865 45 H 0.160 0.840 46 H 0.166 0.834 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.254 -15.054 11.868 27.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.028 4.028 3 C -0.170 4.170 4 C -0.049 4.049 5 C 0.359 3.641 6 O -0.445 6.445 7 N -0.317 5.317 8 C 0.000 4.000 9 C -0.192 4.192 10 C 0.055 3.945 11 H 0.096 0.904 12 N -0.366 5.366 13 C -0.366 4.366 14 H 0.100 0.900 15 C -0.267 4.267 16 N -0.622 5.622 17 Si 0.802 3.198 18 H -0.216 1.216 19 H -0.228 1.228 20 H -0.192 1.192 21 C 0.024 3.976 22 H 0.107 0.893 23 C -0.194 4.194 24 N -0.171 5.171 25 C -0.026 4.026 26 C -0.129 4.129 27 C -0.111 4.111 28 C -0.120 4.120 29 C -0.120 4.120 30 C -0.103 4.103 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.166 0.834 35 H 0.126 0.874 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.210 0.790 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.153 0.847 45 H 0.177 0.823 46 H 0.184 0.816 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -19.504 -14.512 11.897 27.066 hybrid contribution 0.458 0.479 -1.062 1.252 sum -19.046 -14.033 10.835 26.021 Atomic orbital electron populations 1.20998 0.86369 1.05280 1.04534 1.20556 0.98849 0.90572 0.92864 1.21630 0.92639 1.00758 1.01978 1.21113 0.92386 0.91423 0.99971 1.17970 0.80941 0.88085 0.77056 1.90703 1.68461 1.32339 1.52972 1.48531 1.04381 1.09544 1.69242 1.22471 0.89619 0.87271 1.00591 1.23452 0.96411 0.98959 1.00332 1.21407 0.90472 0.95163 0.87432 0.90391 1.42711 1.03870 1.87693 1.02365 1.19646 0.84317 1.40319 0.92298 0.89999 1.25529 1.01759 1.03961 0.95486 1.69838 1.35033 1.59614 0.97722 0.85155 0.80581 0.77362 0.76732 1.21577 1.22826 1.19236 1.21982 0.90322 0.86569 0.98690 0.89318 1.21759 1.00875 0.99722 0.97047 1.68058 1.39654 0.97912 1.11443 1.19386 0.91237 0.92148 0.99786 1.21071 1.00918 0.90345 1.00613 1.21359 0.95360 0.98117 0.96296 1.21478 0.93760 0.99927 0.96842 1.21404 1.01822 0.89965 0.98848 1.19154 0.93394 0.95878 1.01891 0.88712 0.88274 0.89660 0.83375 0.87364 0.94136 0.90687 0.89257 0.79010 0.94262 0.94422 0.92778 0.91608 0.84698 0.82265 0.81631 0.81766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.59 71.24 0.68 -0.53 16 2 C -0.02 -0.41 5.92 -19.65 -0.12 -0.53 16 3 C -0.15 -3.98 9.23 22.36 0.21 -3.77 16 4 C 0.10 3.36 6.73 42.29 0.28 3.65 16 5 C 0.57 21.49 7.64 86.91 0.66 22.15 16 6 O -0.57 -23.17 15.33 -3.71 -0.06 -23.23 16 7 N -0.59 -21.80 3.07 -790.95 -2.43 -24.23 16 8 C 0.12 4.35 5.90 86.85 0.51 4.86 16 9 C -0.15 -5.20 6.78 31.99 0.22 -4.98 16 10 C 0.17 6.54 3.46 46.18 0.16 6.70 16 11 H 0.08 2.95 8.11 -2.39 -0.02 2.93 16 12 N -0.73 -36.17 4.62 -317.32 -1.46 -37.63 16 13 C -0.23 -12.68 9.97 84.03 0.84 -11.85 16 14 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 15 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 16 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 17 Si 0.97 46.07 29.55 68.60 2.03 48.09 16 18 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 C 0.13 4.83 3.42 45.34 0.16 4.99 16 22 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 23 C -0.14 -5.60 8.48 71.98 0.61 -4.99 16 24 N -0.46 -14.35 6.52 -177.77 -1.16 -15.50 16 25 C 0.10 2.55 6.61 40.48 0.27 2.82 16 26 C -0.11 -2.33 9.99 22.38 0.22 -2.10 16 27 C -0.09 -1.24 9.94 22.04 0.22 -1.03 16 28 C -0.10 -1.07 9.95 22.07 0.22 -0.85 16 29 C -0.10 -1.31 9.31 22.31 0.21 -1.10 16 30 C -0.10 -2.11 5.75 -21.22 -0.12 -2.23 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.57 6.51 -2.39 -0.02 0.55 16 33 H 0.08 0.81 8.10 -2.38 -0.02 0.79 16 34 H 0.15 3.78 7.60 -2.91 -0.02 3.76 16 35 H 0.11 3.53 5.88 -2.39 -0.01 3.52 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.38 20.68 5.58 -92.71 -0.52 20.16 16 40 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 41 H 0.04 1.75 6.21 -2.39 -0.01 1.74 16 42 H 0.05 2.20 6.91 -2.39 -0.02 2.18 16 43 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 44 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 45 H 0.16 1.22 8.06 -2.91 -0.02 1.19 16 46 H 0.17 0.53 8.06 -2.91 -0.02 0.50 16 47 H 0.16 0.98 6.44 -2.91 -0.02 0.96 16 Total: -1.00 -73.07 378.11 3.38 -69.69 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 0.48 Total: 35.11 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 5.70 Total: 7.38 kcal Atomic # 7 Polarization: -132.28 SS G_CDS: -4.77 Total: -137.05 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.06 Total: -23.23 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -73.07 3.38 -69.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986421760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.236 kcal (2) G-P(sol) polarization free energy of solvation -73.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds