Wall clock time and date at job start Tue Mar 31 2020 22:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36543 * 120.88397 * 2 1 4 4 C 1.40234 * 119.81730 * 180.26325 * 3 2 1 5 5 C 1.48278 * 119.23676 * 179.69772 * 4 3 2 6 6 O 1.21495 * 120.00265 * 359.73081 * 5 4 3 7 7 N 1.34777 * 120.00005 * 179.73122 * 5 4 3 8 8 C 1.47424 * 125.64751 * 359.97438 * 7 5 4 9 9 C 1.54913 * 104.83373 * 155.91265 * 8 7 5 10 10 C 1.55159 * 101.58256 * 37.00666 * 9 8 7 11 11 H 1.09000 * 110.72025 * 205.96109 * 10 9 8 12 12 N 1.46496 * 110.71892 * 82.86063 * 10 9 8 13 13 C 1.36945 * 119.99718 * 88.84511 * 12 10 9 14 14 H 1.07997 * 119.99756 * 359.97438 * 13 12 10 15 15 C 1.38805 * 119.99878 * 179.97438 * 13 12 10 16 16 N 1.31624 * 120.00257 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47187 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47141 * 300.00154 * 17 15 13 20 20 H 1.48498 * 109.47018 * 60.00200 * 17 15 13 21 21 C 1.47487 * 125.59501 * 179.97438 * 7 5 4 22 22 H 1.08999 * 109.96659 * 300.33278 * 21 7 5 23 23 C 1.53001 * 110.02701 * 61.64698 * 21 7 5 24 24 N 1.31898 * 121.52455 * 359.42094 * 4 3 2 25 25 C 1.33243 * 121.29571 * 0.27500 * 24 4 3 26 26 C 1.40836 * 120.98681 * 180.02562 * 25 24 4 27 27 C 1.35983 * 119.73774 * 179.97438 * 26 25 24 28 28 C 1.39438 * 121.08790 * 0.02731 * 27 26 25 29 29 C 1.36130 * 120.92053 * 359.95311 * 28 27 26 30 30 C 1.40424 * 119.64968 * 0.03806 * 29 28 27 31 31 H 1.09002 * 109.47326 * 270.32563 * 1 2 3 32 32 H 1.09004 * 109.46706 * 30.32358 * 1 2 3 33 33 H 1.08999 * 109.47033 * 150.31737 * 1 2 3 34 34 H 1.08000 * 120.08707 * 359.96855 * 3 2 1 35 35 H 1.09004 * 110.37299 * 37.07240 * 8 7 5 36 36 H 1.08997 * 110.36565 * 274.74575 * 8 7 5 37 37 H 1.08997 * 111.00141 * 278.93407 * 9 8 7 38 38 H 1.09001 * 111.03857 * 155.09522 * 9 8 7 39 39 H 0.96996 * 120.00499 * 268.84242 * 12 10 9 40 40 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.46878 * 177.61103 * 23 21 7 42 42 H 1.09002 * 109.47576 * 297.60711 * 23 21 7 43 43 H 1.08995 * 109.47363 * 57.61277 * 23 21 7 44 44 H 1.08003 * 120.12619 * 359.96377 * 26 25 24 45 45 H 1.08003 * 119.45784 * 180.02562 * 27 26 25 46 46 H 1.07997 * 119.54358 * 179.97438 * 28 27 26 47 47 H 1.08003 * 120.17781 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2079 1.1718 0.0000 4 6 3.6099 1.1457 -0.0056 5 6 4.3581 2.4259 -0.0123 6 8 3.7562 3.4813 -0.0179 7 7 5.7058 2.4188 -0.0123 8 6 6.5587 1.2163 -0.0054 9 6 7.9033 1.6802 -0.6192 10 6 8.0308 3.1147 -0.0420 11 1 8.6415 3.7397 -0.6935 12 7 8.5885 3.0807 1.3123 13 6 9.9449 3.1242 1.4954 14 1 10.6035 3.1831 0.6415 15 6 10.4733 3.0925 2.7786 16 7 9.6707 3.0202 3.8193 17 14 12.3237 3.1511 3.0284 18 1 12.6287 3.1050 4.4810 19 1 12.9514 1.9871 2.3531 20 1 12.8617 4.4085 2.4498 21 6 6.5706 3.6135 -0.0191 22 1 6.3697 4.2133 -0.9068 23 6 6.3248 4.4455 1.2412 24 7 4.2786 0.0088 0.0005 25 6 3.6480 -1.1650 0.0067 26 6 4.3685 -2.3751 0.0137 27 6 3.6990 -3.5587 0.0205 28 6 2.3052 -3.5975 0.0201 29 6 1.5735 -2.4496 0.0139 30 6 2.2291 -1.2078 0.0069 31 1 -0.3634 0.0058 1.0277 32 1 -0.3633 0.8871 -0.5189 33 1 -0.3633 -0.8928 -0.5089 34 1 1.6838 2.1161 -0.0005 35 1 6.1132 0.4316 -0.6169 36 1 6.7092 0.8638 1.0150 37 1 7.8494 1.7004 -1.7077 38 1 8.7256 1.0490 -0.2825 39 1 7.9970 3.0275 2.0792 40 1 10.0401 2.9977 4.7160 41 1 6.9979 5.3028 1.2475 42 1 5.2922 4.7943 1.2507 43 1 6.5093 3.8322 2.1231 44 1 5.4485 -2.3630 0.0134 45 1 4.2561 -4.4839 0.0262 46 1 1.7990 -4.5514 0.0252 47 1 0.4943 -2.4936 0.0141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986421761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:52 Heat of formation + Delta-G solvation = 49.678303 kcal Electronic energy + Delta-G solvation = -29355.403731 eV Core-core repulsion = 25503.790173 eV Total energy + Delta-G solvation = -3851.613559 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.28118 -39.71800 -37.68809 -36.84154 -35.07382 -33.85146 -31.68796 -30.86828 -30.60073 -30.56576 -28.76800 -28.06184 -25.15528 -25.03027 -23.78687 -23.45548 -22.37178 -21.30395 -19.99552 -18.81669 -18.16548 -17.77029 -17.33034 -16.65168 -16.06167 -15.55379 -15.24272 -14.96315 -14.64788 -14.46777 -14.31473 -13.86669 -13.77820 -13.59907 -13.34651 -13.23176 -13.06301 -12.76942 -12.58599 -12.46796 -12.17251 -11.92242 -11.85512 -11.64152 -11.59517 -11.15211 -10.94540 -10.90577 -10.71975 -10.54581 -10.41592 -10.27388 -10.11626 -9.84171 -9.55734 -9.27924 -9.00522 -8.88542 -8.44680 -8.20719 -6.97710 -5.77719 -3.07014 0.02165 0.49343 1.72397 2.33709 3.14279 3.26816 3.43610 3.48376 3.49220 3.94735 3.96892 4.23308 4.41817 4.50837 4.57887 4.58161 4.85300 4.90948 4.97438 5.12547 5.21778 5.23029 5.25695 5.32131 5.44822 5.56763 5.61395 5.67848 5.72138 5.76535 5.83024 5.84757 5.87448 5.98322 6.11756 6.15212 6.17507 6.25335 6.39913 6.44341 6.53394 6.60045 6.64813 6.68914 6.86650 6.91474 7.06403 7.57147 7.69392 7.86643 8.36850 8.40884 9.52032 10.08167 10.43337 11.44523 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.002997 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.087821 B = 9341.201201 C =10500.393141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.034 4.034 3 C -0.128 4.128 4 C 0.131 3.869 5 C 0.575 3.425 6 O -0.541 6.541 7 N -0.582 5.582 8 C 0.109 3.891 9 C -0.164 4.164 10 C 0.171 3.829 11 H 0.068 0.932 12 N -0.714 5.714 13 C -0.242 4.242 14 H 0.071 0.929 15 C -0.010 4.010 16 N -0.931 5.931 17 Si 0.907 3.093 18 H -0.292 1.292 19 H -0.286 1.286 20 H -0.286 1.286 21 C 0.125 3.875 22 H 0.073 0.927 23 C -0.149 4.149 24 N -0.436 5.436 25 C 0.124 3.876 26 C -0.082 4.082 27 C -0.107 4.107 28 C -0.111 4.111 29 C -0.104 4.104 30 C -0.089 4.089 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.388 0.612 40 H 0.256 0.744 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.140 0.860 45 H 0.131 0.869 46 H 0.127 0.873 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.537 -12.350 -9.989 24.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.042 4.042 3 C -0.149 4.149 4 C -0.022 4.022 5 C 0.361 3.639 6 O -0.419 6.419 7 N -0.314 5.314 8 C -0.013 4.013 9 C -0.205 4.205 10 C 0.059 3.941 11 H 0.086 0.914 12 N -0.357 5.357 13 C -0.373 4.373 14 H 0.089 0.911 15 C -0.207 4.207 16 N -0.579 5.579 17 Si 0.738 3.262 18 H -0.218 1.218 19 H -0.213 1.213 20 H -0.213 1.213 21 C 0.022 3.978 22 H 0.091 0.909 23 C -0.207 4.207 24 N -0.148 5.148 25 C 0.001 3.999 26 C -0.101 4.101 27 C -0.127 4.127 28 C -0.129 4.129 29 C -0.122 4.122 30 C -0.091 4.091 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.167 0.833 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.225 0.775 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.085 0.915 44 H 0.158 0.842 45 H 0.149 0.851 46 H 0.145 0.855 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.785 -11.816 -9.955 23.559 hybrid contribution 0.072 -0.172 0.561 0.592 sum -17.713 -11.987 -9.393 23.360 Atomic orbital electron populations 1.20860 0.89566 1.03650 1.03281 1.20113 0.96817 0.91687 0.95549 1.21598 0.93608 0.99619 1.00044 1.21395 0.91532 0.92313 0.96993 1.17493 0.81141 0.87155 0.78092 1.90744 1.68076 1.31130 1.51922 1.48622 1.04092 1.09794 1.68860 1.22615 0.89610 0.87086 1.01954 1.23580 0.96964 1.01269 0.98702 1.21200 0.89980 0.93503 0.89372 0.91425 1.42564 1.04609 1.87609 1.00881 1.19190 0.83074 1.42964 0.92086 0.91108 1.24738 0.97641 1.02781 0.95514 1.69658 1.33433 1.57129 0.97663 0.86271 0.85395 0.77830 0.76673 1.21788 1.21284 1.21277 1.22164 0.90658 0.86093 0.98892 0.90871 1.21917 1.01159 1.00182 0.97478 1.68248 1.38668 0.97315 1.10619 1.18981 0.89731 0.92365 0.98804 1.20940 1.00796 0.89933 0.98385 1.20932 0.94425 0.98134 0.99165 1.20978 0.94191 0.98492 0.99198 1.21001 1.00058 0.91152 0.99998 1.18838 0.94003 0.94274 1.01962 0.90061 0.90416 0.90725 0.83301 0.88841 0.91282 0.92334 0.89527 0.77504 0.93425 0.91283 0.92688 0.91543 0.84191 0.85113 0.85504 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 9.59 36.00 0.35 -0.45 16 2 C -0.03 -0.36 5.92 -104.30 -0.62 -0.98 16 3 C -0.13 -1.67 9.23 -39.44 -0.36 -2.03 16 4 C 0.13 2.04 6.72 -82.96 -0.56 1.49 16 5 C 0.57 10.32 7.64 -12.13 -0.09 10.22 16 6 O -0.54 -10.62 15.35 5.37 0.08 -10.54 16 7 N -0.58 -10.45 3.08 -163.61 -0.50 -10.95 16 8 C 0.11 1.88 5.91 -2.53 -0.01 1.87 16 9 C -0.16 -2.85 6.77 -24.58 -0.17 -3.01 16 10 C 0.17 3.37 3.46 -66.10 -0.23 3.14 16 11 H 0.07 1.31 8.11 -51.93 -0.42 0.89 16 12 N -0.71 -17.32 4.61 -51.65 -0.24 -17.56 16 13 C -0.24 -6.50 9.97 -15.06 -0.15 -6.65 16 14 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 15 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 16 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 17 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.12 2.31 3.45 -66.70 -0.23 2.08 16 22 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 23 C -0.15 -2.93 8.48 37.16 0.32 -2.61 16 24 N -0.44 -6.57 6.51 -7.54 -0.05 -6.62 16 25 C 0.12 1.63 6.61 -84.85 -0.56 1.07 16 26 C -0.08 -0.89 9.99 -39.41 -0.39 -1.28 16 27 C -0.11 -0.89 9.94 -39.94 -0.40 -1.29 16 28 C -0.11 -0.84 9.96 -39.89 -0.40 -1.23 16 29 C -0.10 -0.87 9.31 -39.52 -0.37 -1.24 16 30 C -0.09 -1.00 5.75 -106.71 -0.61 -1.61 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 33 H 0.07 0.39 6.51 -51.93 -0.34 0.05 16 34 H 0.15 1.82 7.60 -52.49 -0.40 1.42 16 35 H 0.09 1.48 5.88 -51.93 -0.31 1.18 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 39 H 0.39 10.17 5.58 -40.82 -0.23 9.95 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.05 1.06 6.93 -51.93 -0.36 0.70 16 43 H 0.07 1.45 6.21 -51.93 -0.32 1.13 16 44 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 45 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 46 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 47 H 0.13 0.76 6.44 -52.48 -0.34 0.42 16 LS Contribution 378.16 15.07 5.70 5.70 Total: -1.00 -31.95 378.16 -10.38 -42.33 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -6.48 Total: 10.53 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -4.59 Total: -2.92 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: -0.07 Total: -62.15 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.08 Total: -10.54 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.95 -10.38 -42.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986421761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.007 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds