Wall clock time and date at job start Tue Mar 31 2020 22:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36543 * 120.88397 * 2 1 4 4 C 1.40234 * 119.81730 * 180.26325 * 3 2 1 5 5 C 1.48278 * 119.23676 * 179.69772 * 4 3 2 6 6 O 1.21495 * 120.00265 * 359.73081 * 5 4 3 7 7 N 1.34777 * 120.00005 * 179.73122 * 5 4 3 8 8 C 1.47424 * 125.64751 * 359.97438 * 7 5 4 9 9 C 1.54913 * 104.83373 * 155.91265 * 8 7 5 10 10 C 1.55159 * 101.58256 * 37.00666 * 9 8 7 11 11 H 1.09000 * 110.72025 * 205.96109 * 10 9 8 12 12 N 1.46496 * 110.71892 * 82.86063 * 10 9 8 13 13 C 1.36945 * 119.99718 * 88.84511 * 12 10 9 14 14 H 1.07997 * 119.99756 * 359.97438 * 13 12 10 15 15 C 1.38805 * 119.99878 * 179.97438 * 13 12 10 16 16 N 1.31624 * 120.00257 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99929 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47187 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47141 * 300.00154 * 17 15 13 20 20 H 1.48498 * 109.47018 * 60.00200 * 17 15 13 21 21 C 1.47487 * 125.59501 * 179.97438 * 7 5 4 22 22 H 1.08999 * 109.96659 * 300.33278 * 21 7 5 23 23 C 1.53001 * 110.02701 * 61.64698 * 21 7 5 24 24 N 1.31898 * 121.52455 * 359.42094 * 4 3 2 25 25 C 1.33243 * 121.29571 * 0.27500 * 24 4 3 26 26 C 1.40836 * 120.98681 * 180.02562 * 25 24 4 27 27 C 1.35983 * 119.73774 * 179.97438 * 26 25 24 28 28 C 1.39438 * 121.08790 * 0.02731 * 27 26 25 29 29 C 1.36130 * 120.92053 * 359.95311 * 28 27 26 30 30 C 1.40424 * 119.64968 * 0.03806 * 29 28 27 31 31 H 1.09002 * 109.47326 * 270.32563 * 1 2 3 32 32 H 1.09004 * 109.46706 * 30.32358 * 1 2 3 33 33 H 1.08999 * 109.47033 * 150.31737 * 1 2 3 34 34 H 1.08000 * 120.08707 * 359.96855 * 3 2 1 35 35 H 1.09004 * 110.37299 * 37.07240 * 8 7 5 36 36 H 1.08997 * 110.36565 * 274.74575 * 8 7 5 37 37 H 1.08997 * 111.00141 * 278.93407 * 9 8 7 38 38 H 1.09001 * 111.03857 * 155.09522 * 9 8 7 39 39 H 0.96996 * 120.00499 * 268.84242 * 12 10 9 40 40 H 0.97001 * 119.99885 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.46878 * 177.61103 * 23 21 7 42 42 H 1.09002 * 109.47576 * 297.60711 * 23 21 7 43 43 H 1.08995 * 109.47363 * 57.61277 * 23 21 7 44 44 H 1.08003 * 120.12619 * 359.96377 * 26 25 24 45 45 H 1.08003 * 119.45784 * 180.02562 * 27 26 25 46 46 H 1.07997 * 119.54358 * 179.97438 * 28 27 26 47 47 H 1.08003 * 120.17781 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2079 1.1718 0.0000 4 6 3.6099 1.1457 -0.0056 5 6 4.3581 2.4259 -0.0123 6 8 3.7562 3.4813 -0.0179 7 7 5.7058 2.4188 -0.0123 8 6 6.5587 1.2163 -0.0054 9 6 7.9033 1.6802 -0.6192 10 6 8.0308 3.1147 -0.0420 11 1 8.6415 3.7397 -0.6935 12 7 8.5885 3.0807 1.3123 13 6 9.9449 3.1242 1.4954 14 1 10.6035 3.1831 0.6415 15 6 10.4733 3.0925 2.7786 16 7 9.6707 3.0202 3.8193 17 14 12.3237 3.1511 3.0284 18 1 12.6287 3.1050 4.4810 19 1 12.9514 1.9871 2.3531 20 1 12.8617 4.4085 2.4498 21 6 6.5706 3.6135 -0.0191 22 1 6.3697 4.2133 -0.9068 23 6 6.3248 4.4455 1.2412 24 7 4.2786 0.0088 0.0005 25 6 3.6480 -1.1650 0.0067 26 6 4.3685 -2.3751 0.0137 27 6 3.6990 -3.5587 0.0205 28 6 2.3052 -3.5975 0.0201 29 6 1.5735 -2.4496 0.0139 30 6 2.2291 -1.2078 0.0069 31 1 -0.3634 0.0058 1.0277 32 1 -0.3633 0.8871 -0.5189 33 1 -0.3633 -0.8928 -0.5089 34 1 1.6838 2.1161 -0.0005 35 1 6.1132 0.4316 -0.6169 36 1 6.7092 0.8638 1.0150 37 1 7.8494 1.7004 -1.7077 38 1 8.7256 1.0490 -0.2825 39 1 7.9970 3.0275 2.0792 40 1 10.0401 2.9977 4.7160 41 1 6.9979 5.3028 1.2475 42 1 5.2922 4.7943 1.2507 43 1 6.5093 3.8322 2.1231 44 1 5.4485 -2.3630 0.0134 45 1 4.2561 -4.4839 0.0262 46 1 1.7990 -4.5514 0.0252 47 1 0.4943 -2.4936 0.0141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986421761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:51 Heat of formation + Delta-G solvation = 31.679367 kcal Electronic energy + Delta-G solvation = -29356.184224 eV Core-core repulsion = 25503.790173 eV Total energy + Delta-G solvation = -3852.394051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.23629 -41.04894 -39.04748 -37.83686 -36.04170 -35.56077 -33.38214 -32.30824 -31.77230 -31.32759 -30.44424 -28.78828 -26.76697 -26.20856 -25.38480 -24.55900 -23.62424 -22.20643 -21.38413 -20.20938 -19.39941 -19.02761 -18.70401 -17.78778 -17.51825 -16.73524 -16.55162 -16.15976 -15.80581 -15.66638 -15.53845 -15.23304 -15.11788 -14.74124 -14.41710 -14.29311 -14.16010 -13.98028 -13.94291 -13.81711 -13.28574 -13.00081 -12.99337 -12.85050 -12.72708 -12.65614 -12.56781 -12.33709 -12.28275 -12.20979 -12.10536 -11.71640 -11.48675 -11.27147 -11.19772 -10.91953 -10.36031 -9.91823 -9.63681 -9.21196 -8.99444 -7.91160 -5.20059 -0.86072 -0.36088 0.90859 1.33595 1.49493 1.52120 1.57899 1.81419 2.19756 2.58175 2.89184 3.05627 3.38239 3.46141 3.52337 3.72586 3.74210 3.80823 3.86582 3.94323 4.12149 4.21475 4.23886 4.31686 4.32617 4.41066 4.48110 4.50509 4.57506 4.64476 4.75610 4.78188 4.82803 4.98204 4.99676 5.05702 5.07815 5.11620 5.15577 5.18956 5.30322 5.37709 5.40450 5.42056 5.47375 5.53637 5.56685 5.87555 6.29440 6.41946 6.58810 6.99946 7.36492 8.09737 8.34329 9.32154 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014889 B = 0.002997 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.087821 B = 9341.201201 C =10500.393141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.020 4.020 3 C -0.149 4.149 4 C 0.103 3.897 5 C 0.571 3.429 6 O -0.565 6.565 7 N -0.587 5.587 8 C 0.123 3.877 9 C -0.150 4.150 10 C 0.165 3.835 11 H 0.078 0.922 12 N -0.725 5.725 13 C -0.236 4.236 14 H 0.082 0.918 15 C -0.075 4.075 16 N -0.971 5.971 17 Si 0.973 3.027 18 H -0.301 1.301 19 H -0.277 1.277 20 H -0.278 1.278 21 C 0.128 3.872 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.458 5.458 25 C 0.098 3.902 26 C -0.111 4.111 27 C -0.092 4.092 28 C -0.102 4.102 29 C -0.102 4.102 30 C -0.101 4.101 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.148 0.852 35 H 0.109 0.891 36 H 0.040 0.960 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.375 0.625 40 H 0.249 0.751 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.037 0.963 44 H 0.135 0.865 45 H 0.160 0.840 46 H 0.166 0.834 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.228 -15.090 -11.726 27.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.028 4.028 3 C -0.170 4.170 4 C -0.049 4.049 5 C 0.359 3.641 6 O -0.445 6.445 7 N -0.318 5.318 8 C 0.001 3.999 9 C -0.191 4.191 10 C 0.055 3.945 11 H 0.096 0.904 12 N -0.367 5.367 13 C -0.367 4.367 14 H 0.100 0.900 15 C -0.267 4.267 16 N -0.622 5.622 17 Si 0.802 3.198 18 H -0.228 1.228 19 H -0.203 1.203 20 H -0.205 1.205 21 C 0.025 3.975 22 H 0.108 0.892 23 C -0.194 4.194 24 N -0.171 5.171 25 C -0.026 4.026 26 C -0.130 4.130 27 C -0.111 4.111 28 C -0.120 4.120 29 C -0.120 4.120 30 C -0.103 4.103 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.166 0.834 35 H 0.127 0.873 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.210 0.790 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.153 0.847 45 H 0.177 0.823 46 H 0.184 0.816 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -19.477 -14.561 -11.755 27.010 hybrid contribution 0.463 0.497 1.043 1.245 sum -19.014 -14.064 -10.712 25.963 Atomic orbital electron populations 1.20999 0.86369 1.05280 1.04534 1.20558 0.98849 0.90571 0.92859 1.21629 0.92645 1.00759 1.01983 1.21117 0.92388 0.91435 0.99952 1.17976 0.80961 0.88077 0.77055 1.90701 1.68469 1.32331 1.52994 1.48654 1.04370 1.09529 1.69242 1.22467 0.89625 0.87288 1.00550 1.23451 0.96417 0.98947 1.00322 1.21410 0.90537 0.95129 0.87444 0.90403 1.42706 1.03838 1.87775 1.02332 1.19611 0.84328 1.40516 0.92283 0.90027 1.25529 1.01776 1.03918 0.95473 1.69837 1.35099 1.59554 0.97707 0.85223 0.80526 0.78181 0.75868 1.22789 1.20288 1.20466 1.22075 0.90222 0.86469 0.98729 0.89219 1.21750 1.00890 0.99680 0.97044 1.68053 1.39643 0.97914 1.11458 1.19388 0.91239 0.92152 0.99780 1.21072 1.00917 0.90347 1.00620 1.21358 0.95360 0.98117 0.96294 1.21476 0.93759 0.99925 0.96849 1.21405 1.01821 0.89964 0.98847 1.19157 0.93393 0.95879 1.01897 0.88704 0.89662 0.88276 0.83377 0.87330 0.94163 0.89296 0.90716 0.79011 0.94257 0.91587 0.92763 0.94413 0.84703 0.82264 0.81632 0.81765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.22 9.59 71.24 0.68 -0.53 16 2 C -0.02 -0.41 5.92 -19.65 -0.12 -0.53 16 3 C -0.15 -3.99 9.23 22.36 0.21 -3.78 16 4 C 0.10 3.37 6.72 42.29 0.28 3.65 16 5 C 0.57 21.50 7.64 86.91 0.66 22.16 16 6 O -0.57 -23.19 15.35 -3.70 -0.06 -23.25 16 7 N -0.59 -21.86 3.08 -789.84 -2.43 -24.29 16 8 C 0.12 4.37 5.91 86.86 0.51 4.88 16 9 C -0.15 -5.20 6.77 31.99 0.22 -4.99 16 10 C 0.16 6.53 3.46 46.18 0.16 6.69 16 11 H 0.08 2.94 8.11 -2.39 -0.02 2.93 16 12 N -0.73 -36.20 4.61 -317.34 -1.46 -37.66 16 13 C -0.24 -12.78 9.97 84.03 0.84 -11.95 16 14 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 15 C -0.07 -4.27 5.50 84.86 0.47 -3.81 16 16 N -0.97 -59.96 13.06 21.65 0.28 -59.68 16 17 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 18 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 C 0.13 4.85 3.45 45.25 0.16 5.01 16 22 H 0.09 3.11 8.14 -2.39 -0.02 3.10 16 23 C -0.14 -5.58 8.48 71.98 0.61 -4.97 16 24 N -0.46 -14.36 6.51 -177.77 -1.16 -15.52 16 25 C 0.10 2.55 6.61 40.48 0.27 2.82 16 26 C -0.11 -2.33 9.99 22.38 0.22 -2.11 16 27 C -0.09 -1.25 9.94 22.03 0.22 -1.03 16 28 C -0.10 -1.08 9.96 22.07 0.22 -0.86 16 29 C -0.10 -1.31 9.31 22.31 0.21 -1.11 16 30 C -0.10 -2.11 5.75 -21.22 -0.12 -2.23 16 31 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.81 8.10 -2.39 -0.02 0.79 16 33 H 0.10 0.57 6.51 -2.39 -0.02 0.55 16 34 H 0.15 3.79 7.60 -2.91 -0.02 3.77 16 35 H 0.11 3.55 5.88 -2.39 -0.01 3.54 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 39 H 0.38 20.68 5.58 -92.71 -0.52 20.17 16 40 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.05 2.20 6.93 -2.39 -0.02 2.19 16 43 H 0.04 1.76 6.21 -2.39 -0.01 1.74 16 44 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 45 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 46 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 47 H 0.16 0.98 6.44 -2.91 -0.02 0.96 16 Total: -1.00 -73.03 378.16 3.38 -69.65 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.48 Total: 35.33 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 5.70 Total: 7.33 kcal Atomic # 7 Polarization: -132.38 SS G_CDS: -4.77 Total: -137.15 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.06 Total: -23.25 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -73.03 3.38 -69.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986421761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.327 kcal (2) G-P(sol) polarization free energy of solvation -73.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds