Wall clock time and date at job start Tue Mar 31 2020 22:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39429 * 119.54453 * 2 1 4 4 C 1.35993 * 121.08581 * 179.97438 * 3 2 1 5 5 C 1.40824 * 119.73598 * 0.02914 * 4 3 2 6 6 N 1.33268 * 120.98367 * 179.97438 * 5 4 3 7 7 C 1.31879 * 121.29975 * 180.02562 * 6 5 4 8 8 C 1.48274 * 119.24174 * 180.02562 * 7 6 5 9 9 O 1.21498 * 120.00224 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99647 * 359.97438 * 8 7 6 11 11 C 1.47426 * 125.65357 * 0.03131 * 10 8 7 12 12 C 1.54910 * 104.83403 * 204.08927 * 11 10 8 13 13 C 1.55150 * 101.58155 * 322.98805 * 12 11 10 14 14 H 1.09000 * 110.72405 * 276.96391 * 13 12 11 15 15 N 1.46505 * 110.72033 * 153.86455 * 13 12 11 16 16 C 1.36931 * 119.99788 * 86.45285 * 15 13 12 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 13 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48498 * 109.47174 * 90.00121 * 20 18 16 22 22 H 1.48501 * 109.47062 * 210.00072 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99871 * 20 18 16 24 24 C 1.47026 * 125.64704 * 179.97438 * 10 8 7 25 25 H 1.08997 * 109.88095 * 59.56365 * 24 10 8 26 26 C 1.53004 * 109.88236 * 298.39618 * 24 10 8 27 27 C 1.40279 * 121.51986 * 0.27319 * 7 6 5 28 28 C 1.36512 * 119.81338 * 359.42251 * 27 7 6 29 29 C 1.40756 * 118.24346 * 0.57865 * 28 27 7 30 30 C 1.36138 * 119.54006 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.46666 * 90.00004 * 1 2 3 32 32 H 1.09003 * 109.47234 * 210.00131 * 1 2 3 33 33 H 1.08993 * 109.47076 * 330.00208 * 1 2 3 34 34 H 1.08001 * 119.46111 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.13828 * 180.02562 * 4 3 2 36 36 H 1.08998 * 110.37010 * 85.24819 * 11 10 8 37 37 H 1.08998 * 110.45528 * 322.97562 * 11 10 8 38 38 H 1.08992 * 111.00414 * 204.90818 * 12 11 10 39 39 H 1.09006 * 111.00345 * 81.05844 * 12 11 10 40 40 H 0.97000 * 119.99792 * 266.45080 * 15 13 12 41 41 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 42 42 H 1.08992 * 109.47364 * 302.18759 * 26 24 10 43 43 H 1.09001 * 109.47157 * 62.19172 * 26 24 10 44 44 H 1.09001 * 109.46896 * 182.18806 * 26 24 10 45 45 H 1.08003 * 120.09432 * 179.72284 * 27 7 6 46 46 H 1.08000 * 120.87414 * 180.25975 * 28 27 7 47 47 H 1.07998 * 120.17433 * 0.02874 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2130 0.0000 4 6 3.5540 1.2496 0.0005 5 6 4.2851 0.0460 0.0004 6 7 5.6178 0.0528 0.0004 7 6 6.3087 -1.0705 -0.0001 8 6 7.7902 -1.0097 0.0005 9 8 8.4404 -2.0360 0.0004 10 7 8.4155 0.1842 0.0011 11 6 7.7531 1.5013 0.0018 12 6 8.7961 2.4702 -0.6089 13 6 10.1201 1.9118 -0.0238 14 1 10.2888 2.2948 0.9826 15 7 11.2507 2.2377 -0.8967 16 6 11.8987 3.4361 -0.7591 17 1 11.5766 4.1409 -0.0068 18 6 12.9736 3.7424 -1.5823 19 7 13.3664 2.8832 -2.4987 20 14 13.8625 5.3740 -1.3894 21 1 14.9723 5.2208 -0.4148 22 1 14.4119 5.7966 -2.7028 23 1 12.9099 6.4015 -0.8976 24 6 9.8715 0.3889 0.0022 25 1 10.3115 -0.0736 -0.8812 26 6 10.4810 -0.2163 1.2684 27 6 5.6743 -2.3216 -0.0065 28 6 4.3110 -2.3914 -0.0003 29 6 3.5824 -1.1871 -0.0001 30 6 2.1782 -1.1844 -0.0005 31 1 -0.3633 0.0000 -1.0278 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8899 0.5138 34 1 1.6384 2.1388 -0.0004 35 1 4.0709 2.1978 0.0009 36 1 7.5071 1.8016 1.0203 37 1 6.8534 1.4756 -0.6130 38 1 8.6219 3.4929 -0.2749 39 1 8.7942 2.4107 -1.6974 40 1 11.5402 1.6044 -1.5721 41 1 14.1173 3.0975 -3.0743 42 1 10.0214 0.2381 2.1460 43 1 10.3016 -1.2914 1.2799 44 1 11.5544 -0.0269 1.2812 45 1 6.2628 -3.2272 -0.0113 46 1 3.8048 -3.3455 -0.0008 47 1 1.6336 -2.1170 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986528086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:42 Heat of formation + Delta-G solvation = 41.947894 kcal Electronic energy + Delta-G solvation = -28717.723245 eV Core-core repulsion = 24865.774470 eV Total energy + Delta-G solvation = -3851.948774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.29961 -39.80649 -37.88638 -37.10078 -34.25179 -33.76739 -32.57292 -31.39911 -30.80538 -30.55252 -29.16854 -27.58535 -25.14670 -24.63755 -23.86815 -23.01532 -22.34094 -22.13126 -20.27045 -19.35389 -18.23366 -17.39519 -17.10547 -17.02773 -16.04122 -15.68033 -15.25003 -14.84528 -14.67841 -14.52540 -14.41911 -14.09530 -13.72468 -13.58538 -13.50365 -13.39762 -13.18787 -12.92373 -12.76734 -12.61902 -12.10156 -11.93070 -11.82557 -11.77761 -11.49997 -11.45161 -11.12173 -10.99714 -10.88236 -10.80866 -10.51385 -10.29503 -10.16124 -9.88743 -9.67619 -9.40984 -9.01486 -8.87849 -8.52792 -8.31205 -6.98944 -5.78642 -3.08600 -0.06416 0.40341 1.64536 2.24284 3.04504 3.14605 3.43036 3.48172 3.49898 3.84126 3.88441 4.21355 4.36121 4.39713 4.55676 4.57602 4.66676 4.76874 4.92873 5.10387 5.12594 5.16389 5.20319 5.27242 5.42988 5.45274 5.47392 5.62639 5.65460 5.69295 5.71910 5.77526 5.80801 5.91493 5.96872 6.09874 6.14280 6.14572 6.17569 6.29270 6.42664 6.50501 6.52578 6.65375 6.69432 6.77677 7.00187 7.45913 7.68648 7.76283 8.27880 8.38907 9.50212 10.05278 10.40263 11.43666 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.002473 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.756918 B =11318.128345 C =12500.910799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.076 4.076 3 C -0.104 4.104 4 C -0.079 4.079 5 C 0.117 3.883 6 N -0.433 5.433 7 C 0.125 3.875 8 C 0.575 3.425 9 O -0.537 6.537 10 N -0.583 5.583 11 C 0.102 3.898 12 C -0.159 4.159 13 C 0.176 3.824 14 H 0.065 0.935 15 N -0.715 5.715 16 C -0.241 4.241 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C 0.125 3.875 25 H 0.080 0.920 26 C -0.154 4.154 27 C -0.122 4.122 28 C -0.066 4.066 29 C -0.084 4.084 30 C -0.106 4.106 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.141 0.859 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.151 0.849 46 H 0.144 0.856 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.295 -8.104 6.548 29.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.076 4.076 3 C -0.124 4.124 4 C -0.097 4.097 5 C -0.007 4.007 6 N -0.144 5.144 7 C -0.029 4.029 8 C 0.361 3.639 9 O -0.414 6.414 10 N -0.315 5.315 11 C -0.021 4.021 12 C -0.200 4.200 13 C 0.065 3.935 14 H 0.082 0.918 15 N -0.356 5.356 16 C -0.372 4.372 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C 0.022 3.978 25 H 0.098 0.902 26 C -0.212 4.212 27 C -0.143 4.143 28 C -0.092 4.092 29 C -0.086 4.086 30 C -0.124 4.124 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.149 0.851 35 H 0.158 0.842 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.168 0.832 46 H 0.162 0.838 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -26.483 -7.679 6.585 28.349 hybrid contribution 0.169 -0.040 -0.219 0.280 sum -26.314 -7.719 6.366 28.152 Atomic orbital electron populations 1.20863 0.90720 1.03126 1.02675 1.19761 0.96550 0.93009 0.98320 1.20832 0.93992 0.97869 0.99714 1.20907 0.93555 0.97012 0.98257 1.18967 0.89211 0.92956 0.99538 1.68220 1.06901 1.29242 1.10081 1.21417 0.94428 0.89490 0.97565 1.17511 0.85362 0.82919 0.78067 1.90763 1.65786 1.33325 1.51544 1.48404 1.08066 1.05777 1.69230 1.22703 0.96998 0.81161 1.01238 1.23620 0.96658 0.98340 1.01423 1.21252 0.88075 0.89182 0.95025 0.91761 1.42349 1.33779 1.19848 1.39624 1.19199 1.09305 0.93915 1.14735 0.91010 1.24765 0.99033 0.98416 0.98582 1.69667 1.29395 1.35540 1.23226 0.86181 0.79749 0.83323 0.76850 1.21690 1.21799 1.20717 1.21986 0.78525 0.98203 0.99098 0.90206 1.22048 1.01456 1.01237 0.96501 1.21754 0.95066 0.98898 0.98550 1.21433 0.93654 0.97772 0.96364 1.18949 0.94792 0.94042 1.00851 1.20828 0.92128 0.98301 1.01181 0.90787 0.91319 0.91181 0.85090 0.84166 0.91982 0.88485 0.90697 0.90838 0.78021 0.93422 0.93047 0.91960 0.90988 0.83164 0.83783 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 9.98 36.01 0.36 -0.15 16 2 C -0.08 -0.54 5.85 -104.93 -0.61 -1.15 16 3 C -0.10 -0.78 9.58 -39.94 -0.38 -1.16 16 4 C -0.08 -0.75 9.99 -39.41 -0.39 -1.14 16 5 C 0.12 1.37 6.61 -84.86 -0.56 0.81 16 6 N -0.43 -5.87 6.51 -7.54 -0.05 -5.92 16 7 C 0.12 1.79 6.73 -82.95 -0.56 1.23 16 8 C 0.58 9.79 7.63 -12.13 -0.09 9.69 16 9 O -0.54 -10.25 15.33 5.37 0.08 -10.17 16 10 N -0.58 -9.92 3.07 -163.95 -0.50 -10.43 16 11 C 0.10 1.56 5.93 -2.53 -0.01 1.54 16 12 C -0.16 -2.79 6.77 -24.59 -0.17 -2.95 16 13 C 0.18 3.50 3.11 -66.09 -0.21 3.29 16 14 H 0.06 1.28 7.84 -51.93 -0.41 0.87 16 15 N -0.72 -17.69 5.25 -51.65 -0.27 -17.96 16 16 C -0.24 -6.53 9.98 -15.06 -0.15 -6.68 16 17 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -27.94 13.06 55.49 0.72 -27.21 16 20 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.13 2.32 3.21 -66.95 -0.21 2.11 16 25 H 0.08 1.64 7.69 -51.93 -0.40 1.24 16 26 C -0.15 -2.67 9.10 37.16 0.34 -2.33 16 27 C -0.12 -1.43 9.54 -39.44 -0.38 -1.81 16 28 C -0.07 -0.62 9.88 -39.25 -0.39 -1.01 16 29 C -0.08 -0.85 5.75 -106.71 -0.61 -1.47 16 30 C -0.11 -0.81 9.37 -39.52 -0.37 -1.19 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 33 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 34 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 35 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.10 1.43 5.88 -51.93 -0.31 1.12 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.39 10.27 7.51 -40.82 -0.31 9.96 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 1.10 6.90 -51.93 -0.36 0.74 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.15 1.65 7.60 -52.48 -0.40 1.25 16 46 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 47 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 385.36 15.07 5.81 5.81 Total: -1.00 -32.25 385.36 -10.52 -42.76 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -6.79 Total: 8.76 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -4.50 Total: -2.78 kcal Atomic # 7 Polarization: -61.42 SS G_CDS: -0.10 Total: -61.52 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.25 -10.52 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986528086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.712 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds