Wall clock time and date at job start Tue Mar 31 2020 22:16:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39429 * 119.54453 * 2 1 4 4 C 1.35993 * 121.08581 * 179.97438 * 3 2 1 5 5 C 1.40824 * 119.73598 * 0.02914 * 4 3 2 6 6 N 1.33268 * 120.98367 * 179.97438 * 5 4 3 7 7 C 1.31879 * 121.29975 * 180.02562 * 6 5 4 8 8 C 1.48274 * 119.24174 * 180.02562 * 7 6 5 9 9 O 1.21498 * 120.00224 * 179.97438 * 8 7 6 10 10 N 1.34776 * 119.99647 * 359.97438 * 8 7 6 11 11 C 1.47426 * 125.65357 * 0.03131 * 10 8 7 12 12 C 1.54910 * 104.83403 * 204.08927 * 11 10 8 13 13 C 1.55150 * 101.58155 * 322.98805 * 12 11 10 14 14 H 1.09000 * 110.72405 * 276.96391 * 13 12 11 15 15 N 1.46505 * 110.72033 * 153.86455 * 13 12 11 16 16 C 1.36931 * 119.99788 * 86.45285 * 15 13 12 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 13 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48498 * 109.47174 * 90.00121 * 20 18 16 22 22 H 1.48501 * 109.47062 * 210.00072 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99871 * 20 18 16 24 24 C 1.47026 * 125.64704 * 179.97438 * 10 8 7 25 25 H 1.08997 * 109.88095 * 59.56365 * 24 10 8 26 26 C 1.53004 * 109.88236 * 298.39618 * 24 10 8 27 27 C 1.40279 * 121.51986 * 0.27319 * 7 6 5 28 28 C 1.36512 * 119.81338 * 359.42251 * 27 7 6 29 29 C 1.40756 * 118.24346 * 0.57865 * 28 27 7 30 30 C 1.36138 * 119.54006 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.46666 * 90.00004 * 1 2 3 32 32 H 1.09003 * 109.47234 * 210.00131 * 1 2 3 33 33 H 1.08993 * 109.47076 * 330.00208 * 1 2 3 34 34 H 1.08001 * 119.46111 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.13828 * 180.02562 * 4 3 2 36 36 H 1.08998 * 110.37010 * 85.24819 * 11 10 8 37 37 H 1.08998 * 110.45528 * 322.97562 * 11 10 8 38 38 H 1.08992 * 111.00414 * 204.90818 * 12 11 10 39 39 H 1.09006 * 111.00345 * 81.05844 * 12 11 10 40 40 H 0.97000 * 119.99792 * 266.45080 * 15 13 12 41 41 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 42 42 H 1.08992 * 109.47364 * 302.18759 * 26 24 10 43 43 H 1.09001 * 109.47157 * 62.19172 * 26 24 10 44 44 H 1.09001 * 109.46896 * 182.18806 * 26 24 10 45 45 H 1.08003 * 120.09432 * 179.72284 * 27 7 6 46 46 H 1.08000 * 120.87414 * 180.25975 * 28 27 7 47 47 H 1.07998 * 120.17433 * 0.02874 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2130 0.0000 4 6 3.5540 1.2496 0.0005 5 6 4.2851 0.0460 0.0004 6 7 5.6178 0.0528 0.0004 7 6 6.3087 -1.0705 -0.0001 8 6 7.7902 -1.0097 0.0005 9 8 8.4404 -2.0360 0.0004 10 7 8.4155 0.1842 0.0011 11 6 7.7531 1.5013 0.0018 12 6 8.7961 2.4702 -0.6089 13 6 10.1201 1.9118 -0.0238 14 1 10.2888 2.2948 0.9826 15 7 11.2507 2.2377 -0.8967 16 6 11.8987 3.4361 -0.7591 17 1 11.5766 4.1409 -0.0068 18 6 12.9736 3.7424 -1.5823 19 7 13.3664 2.8832 -2.4987 20 14 13.8625 5.3740 -1.3894 21 1 14.9723 5.2208 -0.4148 22 1 14.4119 5.7966 -2.7028 23 1 12.9099 6.4015 -0.8976 24 6 9.8715 0.3889 0.0022 25 1 10.3115 -0.0736 -0.8812 26 6 10.4810 -0.2163 1.2684 27 6 5.6743 -2.3216 -0.0065 28 6 4.3110 -2.3914 -0.0003 29 6 3.5824 -1.1871 -0.0001 30 6 2.1782 -1.1844 -0.0005 31 1 -0.3633 0.0000 -1.0278 32 1 -0.3634 -0.8900 0.5139 33 1 -0.3633 0.8899 0.5138 34 1 1.6384 2.1388 -0.0004 35 1 4.0709 2.1978 0.0009 36 1 7.5071 1.8016 1.0203 37 1 6.8534 1.4756 -0.6130 38 1 8.6219 3.4929 -0.2749 39 1 8.7942 2.4107 -1.6974 40 1 11.5402 1.6044 -1.5721 41 1 14.1173 3.0975 -3.0743 42 1 10.0214 0.2381 2.1460 43 1 10.3016 -1.2914 1.2799 44 1 11.5544 -0.0269 1.2812 45 1 6.2628 -3.2272 -0.0113 46 1 3.8048 -3.3455 -0.0008 47 1 1.6336 -2.1170 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986528086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:41 Heat of formation + Delta-G solvation = 23.647912 kcal Electronic energy + Delta-G solvation = -28718.516791 eV Core-core repulsion = 24865.774470 eV Total energy + Delta-G solvation = -3852.742321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.17890 -41.03368 -39.05143 -38.15719 -35.97577 -34.67826 -33.59580 -32.90428 -32.21885 -31.27048 -30.81784 -28.32095 -26.86763 -25.47475 -25.01952 -24.52245 -23.30697 -23.05622 -21.73002 -20.68928 -19.21609 -18.96173 -18.45899 -17.84550 -17.43523 -16.69273 -16.55517 -16.30644 -15.73455 -15.46091 -15.36215 -15.21893 -15.07642 -14.82973 -14.60281 -14.32682 -14.19914 -14.12318 -13.97955 -13.65183 -13.30915 -13.20576 -13.08777 -12.90314 -12.65280 -12.59688 -12.43552 -12.30564 -12.20195 -12.18637 -12.06927 -11.72889 -11.66345 -11.60039 -11.29792 -10.94996 -10.39256 -9.85418 -9.62403 -9.17975 -9.02590 -7.93660 -5.23918 -0.86202 -0.35351 0.90758 1.34858 1.49111 1.51034 1.59218 1.76657 2.15537 2.57238 2.86705 3.05197 3.37456 3.48633 3.59655 3.71961 3.74269 3.78228 3.83976 3.99397 4.01347 4.16883 4.18627 4.33139 4.34867 4.40296 4.42361 4.53500 4.65217 4.67446 4.76676 4.82130 4.89580 4.90768 5.00584 5.02718 5.04415 5.09972 5.19137 5.20100 5.23962 5.32887 5.34129 5.42757 5.49374 5.54747 5.58128 5.87228 6.26070 6.40329 6.57233 6.98333 7.32685 8.03672 8.28762 9.29903 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.002473 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.756918 B =11318.128345 C =12500.910799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 C -0.094 4.094 4 C -0.099 4.099 5 C 0.092 3.908 6 N -0.447 5.447 7 C 0.097 3.903 8 C 0.572 3.428 9 O -0.567 6.567 10 N -0.588 5.588 11 C 0.116 3.884 12 C -0.149 4.149 13 C 0.173 3.827 14 H 0.071 0.929 15 N -0.728 5.728 16 C -0.236 4.236 17 H 0.083 0.917 18 C -0.077 4.077 19 N -0.971 5.971 20 Si 0.975 3.025 21 H -0.288 1.288 22 H -0.299 1.299 23 H -0.265 1.265 24 C 0.130 3.870 25 H 0.051 0.949 26 C -0.143 4.143 27 C -0.139 4.139 28 C -0.049 4.049 29 C -0.093 4.093 30 C -0.108 4.108 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.158 0.842 35 H 0.143 0.857 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.064 0.936 45 H 0.150 0.850 46 H 0.183 0.817 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.396 -7.482 7.825 33.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.073 4.073 3 C -0.114 4.114 4 C -0.118 4.118 5 C -0.032 4.032 6 N -0.159 5.159 7 C -0.055 4.055 8 C 0.360 3.640 9 O -0.447 6.447 10 N -0.319 5.319 11 C -0.006 4.006 12 C -0.190 4.190 13 C 0.063 3.937 14 H 0.089 0.911 15 N -0.368 5.368 16 C -0.367 4.367 17 H 0.101 0.899 18 C -0.269 4.269 19 N -0.622 5.622 20 Si 0.804 3.196 21 H -0.215 1.215 22 H -0.226 1.226 23 H -0.190 1.190 24 C 0.026 3.974 25 H 0.069 0.931 26 C -0.201 4.201 27 C -0.160 4.160 28 C -0.074 4.074 29 C -0.095 4.095 30 C -0.127 4.127 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.175 0.825 35 H 0.161 0.839 36 H 0.097 0.903 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.168 0.832 46 H 0.201 0.799 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -30.638 -7.045 7.905 32.416 hybrid contribution 1.159 -0.245 -0.589 1.323 sum -29.479 -7.289 7.315 31.235 Atomic orbital electron populations 1.20939 0.88370 1.04367 1.03603 1.20188 0.98243 0.92536 0.96311 1.21218 0.93302 0.99429 0.97420 1.21065 0.94527 0.96524 0.99660 1.19345 0.88670 0.94648 1.00528 1.68018 1.08196 1.29134 1.10508 1.21054 0.92644 0.90995 1.00782 1.18037 0.86805 0.82218 0.76950 1.90724 1.66922 1.34181 1.52842 1.48448 1.07228 1.06632 1.69633 1.22672 0.96196 0.79601 1.02115 1.23454 0.95779 0.99621 1.00155 1.21405 0.87595 0.90186 0.94488 0.91097 1.42507 1.35080 1.19092 1.40075 1.19610 1.08693 0.94491 1.13915 0.89911 1.25602 1.00457 1.01938 0.98920 1.69840 1.30123 1.37611 1.24623 0.85116 0.78588 0.79675 0.76223 1.21547 1.22586 1.19000 1.21736 0.79941 0.97152 0.98543 0.93072 1.21935 1.00945 1.00838 0.96430 1.21781 0.96291 0.97814 1.00072 1.21829 0.92534 0.99254 0.93816 1.19246 0.96128 0.93629 1.00526 1.21169 0.91005 1.00007 1.00471 0.89824 0.90073 0.90091 0.82460 0.83896 0.90319 0.87607 0.89300 0.92839 0.79684 0.94109 0.91485 0.92561 0.91728 0.83230 0.79941 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 9.98 71.24 0.71 0.24 16 2 C -0.07 -0.74 5.85 -20.07 -0.12 -0.86 16 3 C -0.09 -1.10 9.58 22.03 0.21 -0.89 16 4 C -0.10 -1.72 9.99 22.38 0.22 -1.50 16 5 C 0.09 2.05 6.61 40.47 0.27 2.32 16 6 N -0.45 -12.06 6.51 -177.77 -1.16 -13.22 16 7 C 0.10 2.85 6.73 42.30 0.28 3.13 16 8 C 0.57 20.23 7.63 86.91 0.66 20.89 16 9 O -0.57 -22.77 15.33 -3.71 -0.06 -22.83 16 10 N -0.59 -20.59 3.07 -790.93 -2.42 -23.01 16 11 C 0.12 3.53 5.93 86.86 0.51 4.05 16 12 C -0.15 -5.24 6.77 31.98 0.22 -5.02 16 13 C 0.17 6.98 3.11 46.18 0.14 7.12 16 14 H 0.07 2.79 7.84 -2.39 -0.02 2.77 16 15 N -0.73 -37.06 5.25 -317.32 -1.67 -38.73 16 16 C -0.24 -12.89 9.98 84.04 0.84 -12.05 16 17 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 18 C -0.08 -4.42 5.50 84.86 0.47 -3.96 16 19 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 20 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 22 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 C 0.13 5.04 3.21 45.34 0.15 5.18 16 25 H 0.05 2.26 7.69 -2.39 -0.02 2.24 16 26 C -0.14 -5.10 9.10 71.98 0.65 -4.44 16 27 C -0.14 -3.24 9.54 22.36 0.21 -3.02 16 28 C -0.05 -0.81 9.88 22.48 0.22 -0.59 16 29 C -0.09 -1.67 5.75 -21.22 -0.12 -1.80 16 30 C -0.11 -1.26 9.37 22.31 0.21 -1.05 16 31 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 32 H 0.08 0.18 8.07 -2.39 -0.02 0.16 16 33 H 0.08 0.20 8.08 -2.39 -0.02 0.18 16 34 H 0.16 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.11 3.10 5.88 -2.39 -0.01 3.09 16 38 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 39 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.37 20.80 7.51 -92.71 -0.70 20.10 16 41 H 0.25 15.08 8.31 -92.70 -0.77 14.30 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 2.06 6.90 -2.39 -0.02 2.04 16 44 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 45 H 0.15 3.37 7.60 -2.91 -0.02 3.34 16 46 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -72.57 385.36 3.04 -69.53 By element: Atomic # 1 Polarization: 32.05 SS G_CDS: 0.29 Total: 32.34 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.75 Total: 7.76 kcal Atomic # 7 Polarization: -129.90 SS G_CDS: -4.97 Total: -134.86 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.06 Total: -22.83 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -72.57 3.04 -69.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986528086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.174 kcal (2) G-P(sol) polarization free energy of solvation -72.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds