Wall clock time and date at job start Tue Mar 31 2020 22:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39440 * 119.54191 * 2 1 4 4 C 1.35986 * 121.08517 * 180.02562 * 3 2 1 5 5 C 1.40830 * 119.73456 * 359.97438 * 4 3 2 6 6 N 1.33272 * 120.98199 * 179.97438 * 5 4 3 7 7 C 1.31874 * 121.29754 * 180.02562 * 6 5 4 8 8 C 1.48277 * 119.23940 * 179.97438 * 7 6 5 9 9 O 1.21501 * 120.00296 * 179.97438 * 8 7 6 10 10 N 1.34778 * 119.99947 * 359.97438 * 8 7 6 11 11 C 1.47424 * 125.64746 * 0.04155 * 10 8 7 12 12 C 1.54913 * 104.83396 * 204.09071 * 11 10 8 13 13 C 1.55154 * 101.58067 * 322.99199 * 12 11 10 14 14 H 1.08999 * 110.72198 * 277.13477 * 13 12 11 15 15 N 1.46501 * 110.71978 * 153.86228 * 13 12 11 16 16 C 1.36941 * 120.00084 * 91.47943 * 15 13 12 17 17 H 1.07997 * 119.99754 * 359.97438 * 16 15 13 18 18 C 1.38808 * 119.99662 * 180.02562 * 16 15 13 19 19 N 1.31615 * 120.00527 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99681 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47311 * 59.99453 * 20 18 16 22 22 H 1.48494 * 109.47338 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46699 * 299.99862 * 20 18 16 24 24 C 1.47022 * 125.65004 * 179.97438 * 10 8 7 25 25 H 1.09002 * 109.88254 * 298.39550 * 24 10 8 26 26 C 1.53005 * 109.87895 * 59.40674 * 24 10 8 27 27 C 1.40281 * 121.52133 * 0.26963 * 7 6 5 28 28 C 1.36501 * 119.81285 * 359.42306 * 27 7 6 29 29 C 1.40760 * 118.24804 * 0.58152 * 28 27 7 30 30 C 1.36127 * 119.54016 * 180.02562 * 2 1 3 31 31 H 1.08993 * 109.46962 * 89.99873 * 1 2 3 32 32 H 1.08993 * 109.46857 * 210.00104 * 1 2 3 33 33 H 1.09005 * 109.46744 * 330.00177 * 1 2 3 34 34 H 1.08002 * 119.45324 * 359.97438 * 3 2 1 35 35 H 1.07998 * 120.13502 * 179.97438 * 4 3 2 36 36 H 1.08998 * 110.36871 * 322.93371 * 11 10 8 37 37 H 1.09007 * 110.36824 * 85.25864 * 11 10 8 38 38 H 1.09001 * 110.99922 * 81.06579 * 12 11 10 39 39 H 1.08993 * 111.00719 * 204.87885 * 12 11 10 40 40 H 0.97001 * 120.00107 * 271.47743 * 15 13 12 41 41 H 0.97002 * 120.00276 * 180.02562 * 19 18 16 42 42 H 1.08991 * 109.47360 * 58.28396 * 26 24 10 43 43 H 1.09006 * 109.46753 * 178.28482 * 26 24 10 44 44 H 1.09004 * 109.46911 * 298.28130 * 26 24 10 45 45 H 1.08001 * 120.08826 * 179.72249 * 27 7 6 46 46 H 1.08001 * 120.87780 * 180.26314 * 28 27 7 47 47 H 1.08000 * 120.18001 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1946 1.2131 0.0000 4 6 3.5539 1.2497 -0.0005 5 6 4.2851 0.0461 -0.0005 6 7 5.6178 0.0530 -0.0015 7 6 6.3087 -1.0703 -0.0021 8 6 7.7902 -1.0094 -0.0038 9 8 8.4405 -2.0357 -0.0038 10 7 8.4156 0.1845 -0.0053 11 6 7.7530 1.5015 -0.0046 12 6 8.7949 2.4700 -0.6180 13 6 10.1200 1.9121 -0.0347 14 1 10.2889 2.2937 0.9723 15 7 11.2490 2.2372 -0.9098 16 6 11.9622 3.3888 -0.7082 17 1 11.6921 4.0574 0.0957 18 6 13.0316 3.6970 -1.5378 19 7 13.3605 2.8823 -2.5178 20 14 14.0040 5.2681 -1.2632 21 1 14.5987 5.2509 0.0974 22 1 15.0868 5.3634 -2.2749 23 1 13.0998 6.4389 -1.3933 24 6 9.8715 0.3893 -0.0065 25 1 10.3071 -0.0410 0.8953 26 6 10.4877 -0.2646 -1.2450 27 6 5.6743 -2.3215 -0.0072 28 6 4.3111 -2.3912 0.0001 29 6 3.5824 -1.1869 0.0002 30 6 2.1782 -1.1843 -0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8901 0.5138 34 1 1.6382 2.1388 -0.0004 35 1 4.0708 2.1980 -0.0009 36 1 6.8530 1.4737 -0.6189 37 1 7.5088 1.8028 1.0142 38 1 8.7911 2.4096 -1.7064 39 1 8.6209 3.4931 -0.2850 40 1 11.4914 1.6368 -1.6321 41 1 14.1080 3.0976 -3.0973 42 1 10.0388 0.1614 -2.1422 43 1 11.5625 -0.0828 -1.2550 44 1 10.3011 -1.3382 -1.2199 45 1 6.2630 -3.2269 -0.0120 46 1 3.8050 -3.3453 0.0006 47 1 1.6336 -2.1170 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986528093.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:49 Heat of formation + Delta-G solvation = 48.526766 kcal Electronic energy + Delta-G solvation = -28815.364426 eV Core-core repulsion = 24963.700933 eV Total energy + Delta-G solvation = -3851.663493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.29766 -39.82670 -37.92664 -37.11774 -34.30476 -33.76022 -32.54830 -31.43621 -30.63188 -30.52888 -29.02328 -27.54130 -25.13149 -24.65333 -23.97632 -23.19933 -22.37100 -22.20295 -20.16922 -18.80656 -18.21054 -17.63032 -17.22545 -17.02883 -15.83089 -15.67216 -15.36301 -14.86361 -14.67204 -14.50040 -14.44349 -14.20668 -13.79114 -13.61345 -13.49682 -13.40307 -13.20840 -12.86649 -12.72929 -12.37024 -12.06350 -11.91715 -11.77765 -11.67728 -11.49841 -11.42159 -11.15589 -10.93997 -10.87570 -10.78060 -10.37807 -10.31144 -10.11179 -9.85369 -9.60515 -9.39360 -9.01081 -8.88263 -8.52589 -8.29867 -6.98525 -5.78525 -3.08004 -0.06061 0.40610 1.64786 2.24730 3.06044 3.15606 3.43777 3.48356 3.49311 3.84712 3.88826 4.21582 4.36298 4.40029 4.56265 4.58226 4.66923 4.77107 4.93119 5.10729 5.12813 5.16547 5.23574 5.28250 5.43023 5.45395 5.52769 5.63659 5.66454 5.69798 5.72664 5.77874 5.84237 5.96485 5.98021 6.12900 6.17228 6.17468 6.27741 6.33008 6.42920 6.52746 6.61728 6.68237 6.79084 6.87837 7.04679 7.46480 7.68751 7.77820 8.29315 8.40107 9.51445 10.07002 10.42254 11.43905 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019551 B = 0.002461 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.776266 B =11373.453958 C =12542.134794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.076 4.076 3 C -0.104 4.104 4 C -0.079 4.079 5 C 0.116 3.884 6 N -0.433 5.433 7 C 0.125 3.875 8 C 0.575 3.425 9 O -0.537 6.537 10 N -0.584 5.584 11 C 0.101 3.899 12 C -0.158 4.158 13 C 0.174 3.826 14 H 0.066 0.934 15 N -0.716 5.716 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.011 4.011 19 N -0.932 5.932 20 Si 0.909 3.091 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C 0.125 3.875 25 H 0.073 0.927 26 C -0.159 4.159 27 C -0.122 4.122 28 C -0.066 4.066 29 C -0.084 4.084 30 C -0.106 4.106 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.140 0.860 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.391 0.609 41 H 0.257 0.743 42 H 0.055 0.945 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.151 0.849 46 H 0.144 0.856 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.264 -8.078 5.748 29.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.077 4.077 3 C -0.124 4.124 4 C -0.097 4.097 5 C -0.007 4.007 6 N -0.144 5.144 7 C -0.029 4.029 8 C 0.361 3.639 9 O -0.414 6.414 10 N -0.315 5.315 11 C -0.022 4.022 12 C -0.199 4.199 13 C 0.062 3.938 14 H 0.084 0.916 15 N -0.359 5.359 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C 0.021 3.979 25 H 0.091 0.909 26 C -0.217 4.217 27 C -0.143 4.143 28 C -0.092 4.092 29 C -0.086 4.086 30 C -0.124 4.124 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.149 0.851 35 H 0.158 0.842 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.228 0.772 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.168 0.832 46 H 0.162 0.838 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -26.424 -7.669 5.783 28.115 hybrid contribution 0.164 -0.026 -0.154 0.227 sum -26.260 -7.695 5.628 27.937 Atomic orbital electron populations 1.20862 0.90723 1.03123 1.02673 1.19761 0.96548 0.93010 0.98333 1.20832 0.93994 0.97865 0.99720 1.20905 0.93554 0.97011 0.98264 1.18970 0.89220 0.92952 0.99534 1.68222 1.06889 1.29247 1.10089 1.21431 0.94465 0.89481 0.97525 1.17510 0.85333 0.82937 0.78082 1.90762 1.65759 1.33347 1.51534 1.48440 1.08108 1.05741 1.69212 1.22700 0.96979 0.81271 1.01224 1.23613 0.96631 0.98318 1.01341 1.21187 0.88171 0.89392 0.95069 0.91642 1.42642 1.32533 1.25435 1.35322 1.19208 1.08399 0.98013 1.11803 0.91111 1.24752 0.99127 0.98783 0.98105 1.69648 1.30682 1.37501 1.20125 0.86249 0.79599 0.83055 0.77140 1.21239 1.21727 1.21254 1.21979 0.78399 0.98343 0.99140 0.90893 1.22005 1.02232 1.00464 0.96960 1.21752 0.95063 0.98907 0.98546 1.21430 0.93658 0.97769 0.96375 1.18950 0.94789 0.94043 1.00861 1.20826 0.92130 0.98299 1.01180 0.90791 0.91321 0.91183 0.85094 0.84171 0.88515 0.91931 0.90949 0.90713 0.77157 0.93361 0.92567 0.90026 0.92124 0.83167 0.83792 0.85186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.51 9.98 36.01 0.36 -0.15 16 2 C -0.08 -0.54 5.85 -104.93 -0.61 -1.15 16 3 C -0.10 -0.78 9.58 -39.94 -0.38 -1.16 16 4 C -0.08 -0.75 9.99 -39.41 -0.39 -1.14 16 5 C 0.12 1.37 6.61 -84.85 -0.56 0.81 16 6 N -0.43 -5.87 6.51 -7.54 -0.05 -5.92 16 7 C 0.12 1.79 6.73 -82.95 -0.56 1.23 16 8 C 0.58 9.79 7.62 -12.13 -0.09 9.70 16 9 O -0.54 -10.25 15.17 5.36 0.08 -10.17 16 10 N -0.58 -9.94 3.08 -163.95 -0.51 -10.44 16 11 C 0.10 1.54 5.93 -2.53 -0.01 1.53 16 12 C -0.16 -2.75 6.77 -24.58 -0.17 -2.92 16 13 C 0.17 3.46 3.49 -66.09 -0.23 3.23 16 14 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 15 N -0.72 -17.63 4.94 -51.65 -0.26 -17.89 16 16 C -0.24 -6.61 9.96 -15.06 -0.15 -6.76 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 20 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.12 2.33 3.47 -66.95 -0.23 2.10 16 25 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 26 C -0.16 -3.09 7.93 37.16 0.29 -2.80 16 27 C -0.12 -1.43 9.54 -39.44 -0.38 -1.81 16 28 C -0.07 -0.62 9.88 -39.26 -0.39 -1.01 16 29 C -0.08 -0.85 5.75 -106.71 -0.61 -1.47 16 30 C -0.11 -0.82 9.37 -39.52 -0.37 -1.19 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 33 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 35 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.10 1.42 5.88 -51.93 -0.31 1.12 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.39 10.17 5.07 -40.82 -0.21 9.96 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.06 1.12 8.02 -51.93 -0.42 0.71 16 43 H 0.08 1.71 6.81 -51.93 -0.35 1.36 16 44 H 0.06 1.17 6.74 -51.93 -0.35 0.82 16 45 H 0.15 1.65 7.60 -52.49 -0.40 1.25 16 46 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 LS Contribution 381.02 15.07 5.74 5.74 Total: -1.00 -32.20 381.02 -10.51 -42.71 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -6.64 Total: 9.32 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -4.58 Total: -3.37 kcal Atomic # 7 Polarization: -61.28 SS G_CDS: -0.08 Total: -61.36 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.20 -10.51 -42.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986528093.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.240 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds