Wall clock time and date at job start Tue Mar 31 2020 22:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36354 * 119.95821 * 2 1 4 4 C 1.38866 * 121.06112 * 179.97438 * 3 2 1 5 5 C 1.38740 * 120.72700 * 0.02562 * 4 3 2 6 6 C 1.47430 * 120.33624 * 179.97438 * 5 4 3 7 7 O 1.21598 * 120.00084 * 215.87547 * 6 5 4 8 8 N 1.34779 * 119.99726 * 35.87349 * 6 5 4 9 9 C 1.47417 * 125.64930 * 355.97168 * 8 6 5 10 10 C 1.54915 * 104.83171 * 155.85299 * 9 8 6 11 11 C 1.55154 * 101.58043 * 37.00936 * 10 9 8 12 12 H 1.09004 * 110.71864 * 206.13544 * 11 10 9 13 13 N 1.46504 * 110.71893 * 82.86331 * 11 10 9 14 14 C 1.36936 * 120.00003 * 91.48012 * 13 11 10 15 15 H 1.07995 * 119.99974 * 359.97438 * 14 13 11 16 16 C 1.38805 * 120.00184 * 180.02562 * 14 13 11 17 17 N 1.31630 * 119.99992 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00566 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47329 * 89.99415 * 18 16 14 20 20 H 1.48498 * 109.47542 * 209.99855 * 18 16 14 21 21 H 1.48504 * 109.46574 * 329.99665 * 18 16 14 22 22 C 1.47016 * 125.64491 * 175.94984 * 8 6 5 23 23 H 1.08997 * 109.88830 * 300.65360 * 22 8 6 24 24 C 1.53003 * 109.88621 * 61.66450 * 22 8 6 25 25 C 1.41778 * 119.33061 * 0.25014 * 5 4 3 26 26 N 1.33353 * 121.04887 * 179.74512 * 25 5 4 27 27 C 1.31229 * 121.35461 * 180.02562 * 26 25 5 28 28 C 1.39233 * 121.69452 * 0.02562 * 27 26 25 29 29 C 1.36634 * 119.90674 * 359.50662 * 28 27 26 30 30 C 1.40438 * 119.95922 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46999 * 90.00109 * 1 2 3 32 32 H 1.09007 * 109.46908 * 210.00232 * 1 2 3 33 33 H 1.08996 * 109.47262 * 329.99980 * 1 2 3 34 34 H 1.08002 * 119.46498 * 359.97438 * 3 2 1 35 35 H 1.08000 * 119.63488 * 179.97438 * 4 3 2 36 36 H 1.09003 * 110.37272 * 274.69203 * 9 8 6 37 37 H 1.09001 * 110.36818 * 37.01818 * 9 8 6 38 38 H 1.08999 * 111.00484 * 155.08357 * 10 9 8 39 39 H 1.09000 * 111.00434 * 278.93644 * 10 9 8 40 40 H 0.97003 * 119.99671 * 271.47378 * 13 11 10 41 41 H 0.96996 * 120.00112 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.47059 * 58.53884 * 24 22 8 43 43 H 1.09000 * 109.47637 * 178.54678 * 24 22 8 44 44 H 1.09002 * 109.46784 * 298.54798 * 24 22 8 45 45 H 1.08001 * 119.15541 * 179.97438 * 27 26 25 46 46 H 1.08007 * 120.04514 * 180.02562 * 28 27 26 47 47 H 1.08012 * 120.92107 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1814 0.0000 4 6 3.5763 1.2081 0.0005 5 6 4.3080 0.0293 0.0005 6 6 5.7818 0.0678 0.0005 7 8 6.4119 -0.7694 -0.6166 8 7 6.4308 1.0309 0.6845 9 6 5.7960 2.1511 1.4025 10 6 6.8286 2.5678 2.4795 11 6 8.1671 2.3745 1.7190 12 1 8.9815 2.1764 2.4159 13 7 8.4658 3.5447 0.8897 14 6 9.2168 4.5706 1.3982 15 1 9.5887 4.5172 2.4107 16 6 9.4993 5.6796 0.6127 17 7 9.0457 5.7449 -0.6212 18 14 10.5233 7.0794 1.3066 19 1 11.9600 6.8265 1.0291 20 1 10.1132 8.3562 0.6688 21 1 10.3106 7.1682 2.7736 22 6 7.8889 1.1379 0.8386 23 1 8.2776 0.2413 1.3213 24 6 8.5453 1.3168 -0.5319 25 6 3.6242 -1.2126 -0.0054 26 7 4.2932 -2.3661 -0.0106 27 6 3.6664 -3.5190 -0.0167 28 6 2.2762 -3.5958 -0.0184 29 6 1.5306 -2.4509 -0.0035 30 6 2.2083 -1.2167 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8899 0.5138 34 1 1.6385 2.1112 -0.0004 35 1 4.0922 2.1569 0.0001 36 1 5.6045 2.9792 0.7201 37 1 4.8688 1.8236 1.8726 38 1 6.6913 3.6093 2.7702 39 1 6.7742 1.9110 3.3477 40 1 8.1315 3.5927 -0.0196 41 1 9.2434 6.5197 -1.1702 42 1 8.1465 2.2104 -1.0119 43 1 9.6232 1.4212 -0.4078 44 1 8.3337 0.4460 -1.1525 45 1 4.2436 -4.4318 -0.0212 46 1 1.7878 -4.5591 -0.0229 47 1 0.4513 -2.4913 -0.0042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986579738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:56 Heat of formation + Delta-G solvation = 49.257406 kcal Electronic energy + Delta-G solvation = -29465.458689 eV Core-core repulsion = 25613.826879 eV Total energy + Delta-G solvation = -3851.631810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.22731 -39.69906 -37.47646 -37.18957 -34.35847 -33.86113 -31.84081 -31.09669 -30.78746 -30.64684 -28.94888 -27.37985 -25.30675 -24.44984 -23.90680 -23.42357 -22.99717 -21.23123 -19.83408 -18.76724 -18.35741 -17.46437 -17.22457 -16.92847 -16.14851 -15.73035 -15.02989 -14.77825 -14.56568 -14.40343 -14.21717 -13.81641 -13.76771 -13.55016 -13.46917 -13.36740 -13.19048 -12.84883 -12.51582 -12.42468 -12.20380 -12.03254 -11.76675 -11.49275 -11.39701 -11.23797 -10.96010 -10.85277 -10.72654 -10.58980 -10.56340 -10.19208 -10.01768 -9.72714 -9.59520 -9.19050 -8.99221 -8.93564 -8.33513 -8.15378 -7.01544 -5.80897 -3.10262 0.03006 0.64076 1.62656 2.61740 3.19185 3.34668 3.41395 3.46907 3.48262 3.99331 4.12476 4.28080 4.49110 4.54660 4.55544 4.57018 4.74712 4.80765 5.00868 5.07958 5.15201 5.20018 5.21713 5.36597 5.42607 5.48395 5.56589 5.64035 5.67732 5.72093 5.76706 5.79397 5.84078 5.91453 6.02590 6.05222 6.15148 6.20591 6.31249 6.39353 6.47209 6.57334 6.60964 6.68862 6.79263 6.95731 7.10233 7.67343 7.83695 7.95178 8.37444 8.58225 9.49096 10.04663 10.39984 11.41321 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.002801 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.196826 B = 9994.403131 C =10798.095223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.048 4.048 3 C -0.124 4.124 4 C -0.065 4.065 5 C -0.102 4.102 6 C 0.573 3.427 7 O -0.513 6.513 8 N -0.605 5.605 9 C 0.100 3.900 10 C -0.160 4.160 11 C 0.172 3.828 12 H 0.070 0.930 13 N -0.713 5.713 14 C -0.242 4.242 15 H 0.072 0.928 16 C -0.010 4.010 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C 0.129 3.871 23 H 0.070 0.930 24 C -0.149 4.149 25 C 0.165 3.835 26 N -0.447 5.447 27 C 0.130 3.870 28 C -0.178 4.178 29 C -0.060 4.060 30 C -0.107 4.107 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.134 0.866 35 H 0.145 0.855 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.388 0.612 41 H 0.256 0.744 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.159 0.841 46 H 0.137 0.863 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.780 -14.953 3.198 25.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.050 4.050 3 C -0.142 4.142 4 C -0.085 4.085 5 C -0.106 4.106 6 C 0.361 3.639 7 O -0.389 6.389 8 N -0.340 5.340 9 C -0.022 4.022 10 C -0.201 4.201 11 C 0.060 3.940 12 H 0.088 0.912 13 N -0.355 5.355 14 C -0.373 4.373 15 H 0.090 0.910 16 C -0.207 4.207 17 N -0.578 5.578 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.219 1.219 21 H -0.208 1.208 22 C 0.025 3.975 23 H 0.088 0.912 24 C -0.207 4.207 25 C 0.042 3.958 26 N -0.153 5.153 27 C -0.042 4.042 28 C -0.198 4.198 29 C -0.086 4.086 30 C -0.110 4.110 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.093 0.907 34 H 0.152 0.848 35 H 0.163 0.837 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.225 0.775 41 H 0.066 0.934 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.176 0.824 46 H 0.155 0.845 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.400 -15.183 2.892 24.030 hybrid contribution -0.572 0.883 0.034 1.053 sum -18.972 -14.300 2.926 23.937 Atomic orbital electron populations 1.20899 0.90478 1.03354 1.02895 1.19847 0.96207 0.91961 0.96941 1.20756 0.93846 0.98030 1.01547 1.21801 0.94183 0.98238 0.94299 1.19845 0.93897 0.91905 1.04963 1.17462 0.86095 0.80734 0.79608 1.90779 1.67666 1.38354 1.42120 1.48525 1.07921 1.25993 1.51540 1.22502 0.96529 0.88595 0.94588 1.23534 0.97988 1.02079 0.96527 1.21195 0.94348 0.86725 0.91736 0.91199 1.42560 1.62059 1.16769 1.14153 1.19240 1.24652 0.96019 0.97423 0.91046 1.24741 1.01157 0.98665 0.96112 1.69664 1.49839 1.30626 1.07710 0.86198 0.80064 0.81960 0.77974 1.21721 1.21854 1.20765 1.21999 0.78865 0.98878 0.97713 0.91210 1.21930 1.00868 1.01831 0.96092 1.18542 0.88914 0.91758 0.96568 1.68188 1.39306 0.97442 1.10381 1.23109 0.91946 0.96223 0.92955 1.21922 0.95619 0.99516 1.02739 1.21476 1.00376 0.91274 0.95476 1.18627 0.93648 0.94349 1.04327 0.90465 0.91145 0.90696 0.84769 0.83707 0.90972 0.91566 0.89403 0.92057 0.77511 0.93448 0.91655 0.91598 0.92551 0.82392 0.84540 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 9.53 36.01 0.34 -0.37 16 2 C -0.05 -0.47 5.89 -104.47 -0.62 -1.09 16 3 C -0.12 -1.26 9.57 -40.03 -0.38 -1.64 16 4 C -0.06 -0.83 7.89 -39.16 -0.31 -1.14 16 5 C -0.10 -1.62 5.55 -104.62 -0.58 -2.20 16 6 C 0.57 10.68 7.22 -12.52 -0.09 10.59 16 7 O -0.51 -11.15 14.89 5.28 0.08 -11.07 16 8 N -0.61 -10.63 3.06 -164.27 -0.50 -11.13 16 9 C 0.10 1.55 5.10 -2.53 -0.01 1.54 16 10 C -0.16 -2.63 6.77 -24.58 -0.17 -2.79 16 11 C 0.17 3.31 3.48 -66.09 -0.23 3.08 16 12 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 13 N -0.71 -16.89 4.55 -51.65 -0.23 -17.13 16 14 C -0.24 -6.39 9.96 -15.06 -0.15 -6.54 16 15 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 16 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 17 N -0.93 -27.28 13.06 55.49 0.72 -26.55 16 18 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.13 2.39 3.45 -66.95 -0.23 2.16 16 23 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 24 C -0.15 -2.98 8.51 37.16 0.32 -2.66 16 25 C 0.17 2.51 6.58 -84.58 -0.56 1.95 16 26 N -0.45 -7.05 9.00 -10.76 -0.10 -7.15 16 27 C 0.13 1.48 11.15 -17.44 -0.19 1.28 16 28 C -0.18 -1.52 10.03 -39.79 -0.40 -1.92 16 29 C -0.06 -0.53 9.36 -39.19 -0.37 -0.90 16 30 C -0.11 -1.26 5.74 -106.82 -0.61 -1.87 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.34 6.42 -51.93 -0.33 0.00 16 33 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.15 1.78 5.40 -52.49 -0.28 1.49 16 36 H 0.07 1.16 7.24 -51.93 -0.38 0.79 16 37 H 0.07 0.88 6.59 -51.93 -0.34 0.54 16 38 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.39 9.90 5.67 -40.82 -0.23 9.67 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.06 1.43 6.20 -51.93 -0.32 1.10 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.06 1.14 6.76 -51.93 -0.35 0.79 16 45 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 47 H 0.14 0.78 6.42 -52.48 -0.34 0.44 16 LS Contribution 374.60 15.07 5.65 5.65 Total: -1.00 -33.78 374.60 -10.09 -43.87 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -6.34 Total: 9.62 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -4.34 Total: -2.90 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.11 Total: -61.95 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.78 -10.09 -43.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986579738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.126 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds