Wall clock time and date at job start Tue Mar 31 2020 22:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36354 * 119.95821 * 2 1 4 4 C 1.38866 * 121.06112 * 179.97438 * 3 2 1 5 5 C 1.38740 * 120.72700 * 0.02562 * 4 3 2 6 6 C 1.47430 * 120.33624 * 179.97438 * 5 4 3 7 7 O 1.21598 * 120.00084 * 215.87547 * 6 5 4 8 8 N 1.34779 * 119.99726 * 35.87349 * 6 5 4 9 9 C 1.47417 * 125.64930 * 355.97168 * 8 6 5 10 10 C 1.54915 * 104.83171 * 155.85299 * 9 8 6 11 11 C 1.55154 * 101.58043 * 37.00936 * 10 9 8 12 12 H 1.09004 * 110.71864 * 206.13544 * 11 10 9 13 13 N 1.46504 * 110.71893 * 82.86331 * 11 10 9 14 14 C 1.36936 * 120.00003 * 91.48012 * 13 11 10 15 15 H 1.07995 * 119.99974 * 359.97438 * 14 13 11 16 16 C 1.38805 * 120.00184 * 180.02562 * 14 13 11 17 17 N 1.31630 * 119.99992 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00566 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47329 * 89.99415 * 18 16 14 20 20 H 1.48498 * 109.47542 * 209.99855 * 18 16 14 21 21 H 1.48504 * 109.46574 * 329.99665 * 18 16 14 22 22 C 1.47016 * 125.64491 * 175.94984 * 8 6 5 23 23 H 1.08997 * 109.88830 * 300.65360 * 22 8 6 24 24 C 1.53003 * 109.88621 * 61.66450 * 22 8 6 25 25 C 1.41778 * 119.33061 * 0.25014 * 5 4 3 26 26 N 1.33353 * 121.04887 * 179.74512 * 25 5 4 27 27 C 1.31229 * 121.35461 * 180.02562 * 26 25 5 28 28 C 1.39233 * 121.69452 * 0.02562 * 27 26 25 29 29 C 1.36634 * 119.90674 * 359.50662 * 28 27 26 30 30 C 1.40438 * 119.95922 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46999 * 90.00109 * 1 2 3 32 32 H 1.09007 * 109.46908 * 210.00232 * 1 2 3 33 33 H 1.08996 * 109.47262 * 329.99980 * 1 2 3 34 34 H 1.08002 * 119.46498 * 359.97438 * 3 2 1 35 35 H 1.08000 * 119.63488 * 179.97438 * 4 3 2 36 36 H 1.09003 * 110.37272 * 274.69203 * 9 8 6 37 37 H 1.09001 * 110.36818 * 37.01818 * 9 8 6 38 38 H 1.08999 * 111.00484 * 155.08357 * 10 9 8 39 39 H 1.09000 * 111.00434 * 278.93644 * 10 9 8 40 40 H 0.97003 * 119.99671 * 271.47378 * 13 11 10 41 41 H 0.96996 * 120.00112 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.47059 * 58.53884 * 24 22 8 43 43 H 1.09000 * 109.47637 * 178.54678 * 24 22 8 44 44 H 1.09002 * 109.46784 * 298.54798 * 24 22 8 45 45 H 1.08001 * 119.15541 * 179.97438 * 27 26 25 46 46 H 1.08007 * 120.04514 * 180.02562 * 28 27 26 47 47 H 1.08012 * 120.92107 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1879 1.1814 0.0000 4 6 3.5763 1.2081 0.0005 5 6 4.3080 0.0293 0.0005 6 6 5.7818 0.0678 0.0005 7 8 6.4119 -0.7694 -0.6166 8 7 6.4308 1.0309 0.6845 9 6 5.7960 2.1511 1.4025 10 6 6.8286 2.5678 2.4795 11 6 8.1671 2.3745 1.7190 12 1 8.9815 2.1764 2.4159 13 7 8.4658 3.5447 0.8897 14 6 9.2168 4.5706 1.3982 15 1 9.5887 4.5172 2.4107 16 6 9.4993 5.6796 0.6127 17 7 9.0457 5.7449 -0.6212 18 14 10.5233 7.0794 1.3066 19 1 11.9600 6.8265 1.0291 20 1 10.1132 8.3562 0.6688 21 1 10.3106 7.1682 2.7736 22 6 7.8889 1.1379 0.8386 23 1 8.2776 0.2413 1.3213 24 6 8.5453 1.3168 -0.5319 25 6 3.6242 -1.2126 -0.0054 26 7 4.2932 -2.3661 -0.0106 27 6 3.6664 -3.5190 -0.0167 28 6 2.2762 -3.5958 -0.0184 29 6 1.5306 -2.4509 -0.0035 30 6 2.2083 -1.2167 0.0005 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8899 0.5138 34 1 1.6385 2.1112 -0.0004 35 1 4.0922 2.1569 0.0001 36 1 5.6045 2.9792 0.7201 37 1 4.8688 1.8236 1.8726 38 1 6.6913 3.6093 2.7702 39 1 6.7742 1.9110 3.3477 40 1 8.1315 3.5927 -0.0196 41 1 9.2434 6.5197 -1.1702 42 1 8.1465 2.2104 -1.0119 43 1 9.6232 1.4212 -0.4078 44 1 8.3337 0.4460 -1.1525 45 1 4.2436 -4.4318 -0.0212 46 1 1.7878 -4.5591 -0.0229 47 1 0.4513 -2.4913 -0.0042 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986579738.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:55 Heat of formation + Delta-G solvation = 28.421776 kcal Electronic energy + Delta-G solvation = -29466.362190 eV Core-core repulsion = 25613.826879 eV Total energy + Delta-G solvation = -3852.535311 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.15892 -41.02397 -38.77703 -38.21902 -35.78561 -35.13597 -33.37521 -32.34080 -31.99043 -31.57997 -30.57129 -28.25055 -26.86471 -25.57104 -25.27664 -24.57514 -24.23585 -22.33679 -21.18575 -20.04653 -19.45925 -19.18733 -18.15820 -18.01184 -17.60063 -16.91597 -16.38092 -15.97844 -15.71754 -15.63305 -15.46607 -15.23671 -14.93224 -14.72806 -14.46134 -14.29111 -14.20353 -14.04831 -14.03172 -13.69308 -13.26543 -13.06119 -12.97092 -12.87931 -12.78304 -12.55417 -12.48981 -12.31275 -12.27214 -12.08810 -12.02693 -11.63497 -11.47747 -11.36094 -10.96255 -10.91495 -10.24461 -9.82611 -9.66106 -9.14451 -8.99506 -7.90778 -5.19392 -0.81538 -0.18559 0.76728 1.50489 1.51722 1.59659 1.70703 1.91242 2.11733 2.58577 3.09023 3.28624 3.35581 3.42969 3.66104 3.72220 3.78115 3.86092 3.88252 3.95166 3.98917 4.07559 4.22751 4.25639 4.35262 4.40008 4.43752 4.51548 4.57130 4.69293 4.75808 4.79713 4.84217 4.87340 4.91361 4.99446 5.04912 5.08757 5.16630 5.18997 5.20911 5.31018 5.36628 5.42486 5.47310 5.57774 5.58960 5.84184 6.30102 6.54138 7.02800 7.19492 7.37549 8.09996 8.35086 9.32499 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020093 B = 0.002801 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.196826 B = 9994.403131 C =10798.095223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.028 4.028 3 C -0.137 4.137 4 C -0.055 4.055 5 C -0.148 4.148 6 C 0.569 3.431 7 O -0.559 6.559 8 N -0.606 5.606 9 C 0.107 3.893 10 C -0.147 4.147 11 C 0.167 3.833 12 H 0.075 0.925 13 N -0.723 5.723 14 C -0.234 4.234 15 H 0.081 0.919 16 C -0.073 4.073 17 N -0.969 5.969 18 Si 0.970 3.030 19 H -0.293 1.293 20 H -0.300 1.300 21 H -0.267 1.267 22 C 0.132 3.868 23 H 0.075 0.925 24 C -0.134 4.134 25 C 0.139 3.861 26 N -0.510 5.510 27 C 0.123 3.877 28 C -0.173 4.173 29 C -0.050 4.050 30 C -0.126 4.126 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.166 0.834 35 H 0.142 0.858 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.377 0.623 41 H 0.249 0.751 42 H 0.042 0.958 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.175 0.825 46 H 0.179 0.821 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.548 -15.837 4.956 28.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.029 4.029 3 C -0.155 4.155 4 C -0.075 4.075 5 C -0.152 4.152 6 C 0.360 3.640 7 O -0.438 6.438 8 N -0.340 5.340 9 C -0.015 4.015 10 C -0.187 4.187 11 C 0.057 3.943 12 H 0.093 0.907 13 N -0.364 5.364 14 C -0.366 4.366 15 H 0.099 0.901 16 C -0.265 4.265 17 N -0.620 5.620 18 Si 0.800 3.200 19 H -0.220 1.220 20 H -0.227 1.227 21 H -0.191 1.191 22 C 0.028 3.972 23 H 0.093 0.907 24 C -0.192 4.192 25 C 0.017 3.983 26 N -0.218 5.218 27 C -0.049 4.049 28 C -0.192 4.192 29 C -0.076 4.076 30 C -0.128 4.128 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.183 0.817 35 H 0.160 0.840 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.211 0.789 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.192 0.808 46 H 0.196 0.804 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -22.191 -16.087 4.714 27.812 hybrid contribution 0.490 0.969 -0.510 1.199 sum -21.701 -15.119 4.204 26.781 Atomic orbital electron populations 1.21048 0.87075 1.05170 1.04276 1.20366 0.98403 0.90874 0.93275 1.21071 0.92623 0.99814 1.01959 1.21881 0.95573 0.96995 0.93097 1.19713 0.91967 0.93743 1.09806 1.18063 0.87614 0.79851 0.78505 1.90723 1.68988 1.40066 1.44017 1.48560 1.07326 1.26430 1.51658 1.22533 0.97268 0.87692 0.94014 1.23390 0.95782 1.02367 0.97188 1.21370 0.96066 0.85331 0.91580 0.90670 1.42670 1.62002 1.17580 1.14170 1.19630 1.23327 0.96118 0.97512 0.90103 1.25493 1.03170 1.01325 0.96561 1.69829 1.51990 1.31096 1.09101 0.85183 0.78114 0.78731 0.77957 1.22037 1.22665 1.19133 1.21855 0.80018 0.98766 0.96516 0.90724 1.21747 1.00443 1.00108 0.96934 1.18769 0.90669 0.91311 0.97557 1.68115 1.41432 0.98878 1.13340 1.23637 0.93964 0.95680 0.91599 1.22310 0.94230 1.01504 1.01179 1.21992 1.02326 0.89953 0.93298 1.18954 0.92413 0.96589 1.04839 0.88975 0.89274 0.89052 0.81687 0.84027 0.91875 0.88859 0.89984 0.89434 0.78877 0.94231 0.93922 0.92171 0.93511 0.80775 0.80366 0.80052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 9.53 71.24 0.68 -0.14 16 2 C -0.03 -0.46 5.89 -19.77 -0.12 -0.57 16 3 C -0.14 -2.48 9.57 21.98 0.21 -2.27 16 4 C -0.06 -1.41 7.89 22.54 0.18 -1.23 16 5 C -0.15 -4.87 5.55 -19.86 -0.11 -4.98 16 6 C 0.57 22.48 7.22 86.66 0.63 23.11 16 7 O -0.56 -26.10 14.89 -4.02 -0.06 -26.16 16 8 N -0.61 -22.08 3.06 -791.90 -2.43 -24.51 16 9 C 0.11 3.30 5.10 86.86 0.44 3.74 16 10 C -0.15 -4.68 6.77 31.99 0.22 -4.46 16 11 C 0.17 6.46 3.48 46.18 0.16 6.62 16 12 H 0.08 2.84 8.09 -2.38 -0.02 2.82 16 13 N -0.72 -35.01 4.55 -317.33 -1.44 -36.45 16 14 C -0.23 -12.42 9.96 84.03 0.84 -11.58 16 15 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 16 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 17 N -0.97 -58.56 13.06 21.65 0.28 -58.27 16 18 Si 0.97 45.36 29.55 68.60 2.03 47.38 16 19 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 C 0.13 5.11 3.45 45.34 0.16 5.26 16 23 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 24 C -0.13 -5.71 8.51 71.98 0.61 -5.10 16 25 C 0.14 4.30 6.58 40.61 0.27 4.57 16 26 N -0.51 -16.66 9.00 -187.96 -1.69 -18.36 16 27 C 0.12 2.71 11.15 85.02 0.95 3.65 16 28 C -0.17 -2.40 10.03 22.13 0.22 -2.18 16 29 C -0.05 -0.70 9.36 22.52 0.21 -0.49 16 30 C -0.13 -2.69 5.74 -21.29 -0.12 -2.81 16 31 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.09 0.32 6.42 -2.38 -0.02 0.30 16 33 H 0.09 0.40 8.08 -2.39 -0.02 0.38 16 34 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 35 H 0.14 3.53 5.40 -2.91 -0.02 3.51 16 36 H 0.06 2.08 7.24 -2.39 -0.02 2.06 16 37 H 0.09 2.40 6.59 -2.39 -0.02 2.38 16 38 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.38 20.04 5.67 -92.71 -0.53 19.51 16 41 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 42 H 0.04 1.99 6.20 -2.39 -0.01 1.98 16 43 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.05 2.05 6.76 -2.39 -0.02 2.03 16 45 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 46 H 0.18 0.92 8.06 -2.91 -0.02 0.89 16 47 H 0.18 0.91 6.42 -2.90 -0.02 0.89 16 Total: -1.00 -79.04 374.60 3.05 -75.99 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.48 Total: 32.86 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: 5.88 Total: 7.51 kcal Atomic # 7 Polarization: -132.31 SS G_CDS: -5.28 Total: -137.59 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -0.06 Total: -26.16 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -79.04 3.05 -75.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986579738.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.412 kcal (2) G-P(sol) polarization free energy of solvation -79.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds