Wall clock time and date at job start Tue Mar 31 2020 22:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36354 * 119.95992 * 2 1 4 4 C 1.38866 * 121.05651 * 180.02562 * 3 2 1 5 5 C 1.38739 * 120.72593 * 359.97438 * 4 3 2 6 6 C 1.47438 * 120.33287 * 179.97438 * 5 4 3 7 7 O 1.21597 * 120.00193 * 144.12272 * 6 5 4 8 8 N 1.34780 * 120.00223 * 324.13424 * 6 5 4 9 9 C 1.47430 * 125.64279 * 4.01817 * 8 6 5 10 10 C 1.54915 * 104.82716 * 204.09407 * 9 8 6 11 11 C 1.55154 * 101.58436 * 322.99288 * 10 9 8 12 12 H 1.08995 * 110.71819 * 277.14050 * 11 10 9 13 13 N 1.46498 * 110.71893 * 154.04151 * 11 10 9 14 14 C 1.36938 * 119.99921 * 86.45327 * 13 11 10 15 15 H 1.08003 * 120.00050 * 0.02562 * 14 13 11 16 16 C 1.38810 * 120.00310 * 179.97438 * 14 13 11 17 17 N 1.31623 * 119.99510 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00495 * 180.02562 * 16 14 13 19 19 H 1.48509 * 109.46909 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47343 * 120.00128 * 18 16 14 21 21 H 1.48500 * 109.47323 * 240.00503 * 18 16 14 22 22 C 1.47013 * 125.65191 * 183.71896 * 8 6 5 23 23 H 1.09003 * 109.88358 * 59.55541 * 22 8 6 24 24 C 1.53003 * 109.88000 * 298.39366 * 22 8 6 25 25 C 1.41776 * 119.33640 * 0.02562 * 5 4 3 26 26 N 1.33355 * 121.04541 * 179.97438 * 25 5 4 27 27 C 1.31231 * 121.34678 * 180.02562 * 26 25 5 28 28 C 1.39231 * 121.70029 * 0.02562 * 27 26 25 29 29 C 1.36638 * 119.90656 * 359.97438 * 28 27 26 30 30 C 1.40437 * 119.95327 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47476 * 269.98321 * 1 2 3 32 32 H 1.08998 * 109.46417 * 29.98256 * 1 2 3 33 33 H 1.08999 * 109.47226 * 149.98022 * 1 2 3 34 34 H 1.07998 * 119.46927 * 0.03879 * 3 2 1 35 35 H 1.08004 * 119.63568 * 179.97438 * 4 3 2 36 36 H 1.08993 * 110.36912 * 322.93606 * 9 8 6 37 37 H 1.09003 * 110.36246 * 85.26354 * 9 8 6 38 38 H 1.08993 * 110.99876 * 81.07294 * 10 9 8 39 39 H 1.09001 * 111.00235 * 204.91928 * 10 9 8 40 40 H 0.97000 * 119.99974 * 266.45416 * 13 11 10 41 41 H 0.96998 * 119.99538 * 180.02562 * 17 16 14 42 42 H 1.08994 * 109.47696 * 61.44993 * 24 22 8 43 43 H 1.09002 * 109.46851 * 181.45642 * 24 22 8 44 44 H 1.08999 * 109.46838 * 301.45050 * 24 22 8 45 45 H 1.08002 * 119.14695 * 180.02562 * 27 26 25 46 46 H 1.07999 * 120.04890 * 179.97438 * 28 27 26 47 47 H 1.08003 * 120.92042 * 179.72548 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1880 1.1813 0.0000 4 6 3.5764 1.2079 -0.0005 5 6 4.3079 0.0291 -0.0005 6 6 5.7818 0.0674 -0.0017 7 8 6.4123 -0.7695 0.6154 8 7 6.4304 1.0302 -0.6865 9 6 5.7951 2.1502 -1.4045 10 6 6.8276 2.5673 -2.4814 11 6 8.1662 2.3746 -1.7209 12 1 8.3879 3.2453 -1.1039 13 7 9.2616 2.1129 -2.6578 14 6 9.9379 3.1575 -3.2293 15 1 9.6640 4.1742 -2.9891 16 6 10.9762 2.9097 -4.1167 17 7 11.3103 1.6706 -4.4091 18 14 11.8993 4.3346 -4.8957 19 1 11.3344 5.6175 -4.4054 20 1 13.3357 4.2540 -4.5280 21 1 11.7617 4.2651 -6.3727 22 6 7.8887 1.1410 -0.8359 23 1 8.2811 0.2455 -1.3179 24 6 8.5399 1.3245 0.5364 25 6 3.6240 -1.2128 -0.0006 26 7 4.2931 -2.3664 -0.0011 27 6 3.6661 -3.5193 -0.0016 28 6 2.2759 -3.5960 -0.0022 29 6 1.5304 -2.4509 -0.0017 30 6 2.2082 -1.2168 -0.0005 31 1 -0.3634 -0.0003 1.0276 32 1 -0.3632 0.8902 -0.5136 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6387 2.1112 0.0006 35 1 4.0924 2.1567 -0.0009 36 1 4.8680 1.8223 -1.8746 37 1 5.6033 2.9782 -0.7220 38 1 6.7734 1.9105 -3.3496 39 1 6.6898 3.6087 -2.7721 40 1 9.5078 1.1998 -2.8733 41 1 12.0361 1.4975 -5.0289 42 1 8.3288 0.4546 1.1581 43 1 9.6179 1.4318 0.4155 44 1 8.1371 2.2182 1.0130 45 1 4.2434 -4.4320 -0.0016 46 1 1.7875 -4.5592 -0.0030 47 1 0.4511 -2.4914 -0.0065 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986579739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:59 Heat of formation + Delta-G solvation = 43.707877 kcal Electronic energy + Delta-G solvation = -29144.516962 eV Core-core repulsion = 25292.644507 eV Total energy + Delta-G solvation = -3851.872456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27973 -39.72439 -37.49931 -37.19763 -34.42598 -34.00372 -31.89594 -31.14918 -30.87207 -30.72018 -29.17070 -27.48188 -25.28753 -24.52012 -23.93646 -23.14343 -22.94257 -21.29197 -20.12256 -19.08610 -18.48266 -17.34860 -17.15305 -17.04776 -16.20192 -15.70636 -15.07495 -14.87022 -14.68061 -14.40002 -14.34435 -13.87145 -13.62521 -13.54961 -13.51863 -13.42619 -13.30637 -12.94006 -12.61812 -12.51335 -12.18041 -12.09553 -11.87851 -11.64123 -11.57088 -11.34931 -11.08476 -10.98642 -10.82021 -10.63269 -10.54976 -10.20495 -9.98029 -9.79982 -9.70549 -9.26212 -9.03992 -8.92332 -8.40921 -8.24908 -7.00778 -5.79727 -3.10053 -0.02622 0.59032 1.58068 2.55174 3.07208 3.27624 3.41838 3.47341 3.49787 3.94553 4.07969 4.22080 4.41557 4.50066 4.52154 4.56238 4.66208 4.76067 4.96879 5.00644 5.08419 5.13928 5.15774 5.31108 5.36704 5.38773 5.50047 5.52935 5.59358 5.67523 5.69647 5.71647 5.78491 5.84721 5.96057 5.99846 6.09854 6.14543 6.17192 6.25437 6.34308 6.51031 6.55127 6.62765 6.67784 6.82736 6.96775 7.67607 7.78808 7.87274 8.37470 8.49587 9.49052 10.04190 10.38966 11.42570 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019217 B = 0.002598 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.694652 B =10776.507437 C =11308.306621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.047 4.047 3 C -0.126 4.126 4 C -0.067 4.067 5 C -0.101 4.101 6 C 0.573 3.427 7 O -0.510 6.510 8 N -0.606 5.606 9 C 0.093 3.907 10 C -0.156 4.156 11 C 0.177 3.823 12 H 0.064 0.936 13 N -0.715 5.715 14 C -0.241 4.241 15 H 0.073 0.927 16 C -0.011 4.011 17 N -0.929 5.929 18 Si 0.908 3.092 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.292 1.292 22 C 0.130 3.870 23 H 0.077 0.923 24 C -0.154 4.154 25 C 0.165 3.835 26 N -0.447 5.447 27 C 0.133 3.867 28 C -0.176 4.176 29 C -0.061 4.061 30 C -0.107 4.107 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.134 0.866 35 H 0.143 0.857 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.160 0.840 46 H 0.138 0.862 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.692 -4.536 10.147 27.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.048 4.048 3 C -0.144 4.144 4 C -0.088 4.088 5 C -0.105 4.105 6 C 0.361 3.639 7 O -0.386 6.386 8 N -0.341 5.341 9 C -0.030 4.030 10 C -0.197 4.197 11 C 0.065 3.935 12 H 0.082 0.918 13 N -0.355 5.355 14 C -0.372 4.372 15 H 0.090 0.910 16 C -0.208 4.208 17 N -0.577 5.577 18 Si 0.739 3.261 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.219 1.219 22 C 0.027 3.973 23 H 0.095 0.905 24 C -0.212 4.212 25 C 0.042 3.958 26 N -0.153 5.153 27 C -0.040 4.040 28 C -0.196 4.196 29 C -0.087 4.087 30 C -0.109 4.109 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.177 0.823 46 H 0.156 0.844 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -24.320 -4.757 10.463 26.899 hybrid contribution -0.375 0.403 -0.663 0.862 sum -24.695 -4.355 9.799 26.923 Atomic orbital electron populations 1.20903 0.90458 1.03427 1.02880 1.19850 0.96221 0.91971 0.96728 1.20718 0.93793 0.97985 1.01919 1.21716 0.94148 0.97978 0.94922 1.19836 0.93796 0.91998 1.04873 1.17487 0.86122 0.80645 0.79653 1.90790 1.67635 1.37913 1.42228 1.48451 1.07925 1.26200 1.51528 1.22593 0.97371 0.88553 0.94465 1.23580 0.96595 1.01802 0.97721 1.21236 0.88137 0.93877 0.90252 0.91780 1.42353 1.36174 1.06976 1.50045 1.19238 1.10709 0.87740 1.19551 0.90954 1.24771 0.99310 0.96331 1.00351 1.69682 1.31880 1.17484 1.38657 0.86112 0.79686 0.81415 0.78905 1.20509 1.21836 1.21867 1.21877 0.78402 1.00315 0.96736 0.90471 1.22053 1.01117 1.01648 0.96424 1.18550 0.88919 0.91807 0.96501 1.68208 1.39293 0.97460 1.10356 1.23142 0.91962 0.96264 0.92624 1.21944 0.95615 0.99577 1.02474 1.21482 1.00397 0.91265 0.95512 1.18632 0.93634 0.94377 1.04297 0.90462 0.90699 0.91079 0.84841 0.83951 0.91119 0.91650 0.90622 0.90551 0.77972 0.93441 0.91771 0.91215 0.93173 0.82268 0.84445 0.84209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.53 36.01 0.34 -0.29 16 2 C -0.05 -0.42 5.89 -104.47 -0.62 -1.03 16 3 C -0.13 -1.11 9.57 -40.03 -0.38 -1.50 16 4 C -0.07 -0.75 7.89 -39.16 -0.31 -1.06 16 5 C -0.10 -1.51 5.55 -104.61 -0.58 -2.09 16 6 C 0.57 10.26 7.21 -12.51 -0.09 10.17 16 7 O -0.51 -10.83 14.90 5.28 0.08 -10.75 16 8 N -0.61 -10.16 3.06 -164.26 -0.50 -10.66 16 9 C 0.09 1.28 5.12 -2.52 -0.01 1.27 16 10 C -0.16 -2.60 6.77 -24.58 -0.17 -2.77 16 11 C 0.18 3.45 3.11 -66.09 -0.21 3.25 16 12 H 0.06 1.24 7.82 -51.93 -0.41 0.84 16 13 N -0.72 -17.63 5.25 -51.65 -0.27 -17.90 16 14 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 15 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 16 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 17 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 18 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 C 0.13 2.43 3.24 -66.95 -0.22 2.21 16 23 H 0.08 1.64 7.70 -51.93 -0.40 1.24 16 24 C -0.15 -2.72 9.10 37.16 0.34 -2.38 16 25 C 0.17 2.45 6.58 -84.58 -0.56 1.89 16 26 N -0.45 -7.06 9.01 -10.76 -0.10 -7.16 16 27 C 0.13 1.52 11.15 -17.44 -0.19 1.32 16 28 C -0.18 -1.49 10.03 -39.79 -0.40 -1.89 16 29 C -0.06 -0.52 9.36 -39.19 -0.37 -0.89 16 30 C -0.11 -1.20 5.74 -106.82 -0.61 -1.82 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 33 H 0.07 0.31 6.41 -51.93 -0.33 -0.03 16 34 H 0.13 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.14 1.36 5.40 -52.48 -0.28 1.07 16 36 H 0.07 0.87 6.60 -51.93 -0.34 0.53 16 37 H 0.07 0.74 7.24 -51.93 -0.38 0.36 16 38 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.39 10.33 7.53 -40.82 -0.31 10.02 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.06 1.19 6.76 -51.93 -0.35 0.84 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 46 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 47 H 0.14 0.73 6.42 -52.48 -0.34 0.39 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -34.92 378.46 -10.15 -45.07 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.48 Total: 8.53 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -4.27 Total: -2.68 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -0.15 Total: -62.92 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.92 -10.15 -45.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986579739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.778 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds