Wall clock time and date at job start Tue Mar 31 2020 22:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36351 * 119.95586 * 2 1 4 4 C 1.38865 * 121.05874 * 179.72146 * 3 2 1 5 5 C 1.38748 * 120.72260 * 0.56783 * 4 3 2 6 6 C 1.47432 * 120.33173 * 179.74404 * 5 4 3 7 7 O 1.21603 * 120.00183 * 184.13576 * 6 5 4 8 8 N 1.34777 * 120.00201 * 4.13252 * 6 5 4 9 9 C 1.47421 * 125.65134 * 184.41336 * 8 6 5 10 10 C 1.55117 * 104.94370 * 156.03290 * 9 8 6 11 11 C 1.55159 * 101.48416 * 36.78500 * 10 9 8 12 12 H 1.09002 * 110.72310 * 83.16563 * 11 10 9 13 13 N 1.46504 * 110.71718 * 206.26617 * 11 10 9 14 14 C 1.36934 * 120.00026 * 271.15083 * 13 11 10 15 15 H 1.08009 * 119.99686 * 0.02562 * 14 13 11 16 16 C 1.38807 * 120.00226 * 180.02562 * 14 13 11 17 17 N 1.31612 * 120.00022 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 120.00039 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.46885 * 269.99854 * 18 16 14 20 20 H 1.48501 * 109.47116 * 29.99839 * 18 16 14 21 21 H 1.48497 * 109.47135 * 149.99914 * 18 16 14 22 22 C 1.47016 * 125.64660 * 4.46325 * 8 6 5 23 23 H 1.09004 * 109.88255 * 300.43694 * 22 8 6 24 24 C 1.53001 * 109.88629 * 61.60458 * 22 8 6 25 25 C 1.41782 * 119.33194 * 359.45961 * 5 4 3 26 26 N 1.33354 * 121.04591 * 180.28116 * 25 5 4 27 27 C 1.31228 * 121.35298 * 179.97438 * 26 25 5 28 28 C 1.39239 * 121.69030 * 0.02562 * 27 26 25 29 29 C 1.36624 * 119.91368 * 359.97438 * 28 27 26 30 30 C 1.40440 * 119.95840 * 180.02562 * 2 1 3 31 31 H 1.08999 * 109.47399 * 269.97764 * 1 2 3 32 32 H 1.08998 * 109.47443 * 29.98118 * 1 2 3 33 33 H 1.09006 * 109.47268 * 149.97697 * 1 2 3 34 34 H 1.08006 * 119.47241 * 359.97438 * 3 2 1 35 35 H 1.08003 * 119.64265 * 180.27972 * 4 3 2 36 36 H 1.09002 * 110.36911 * 274.75471 * 9 8 6 37 37 H 1.09003 * 110.36162 * 37.07191 * 9 8 6 38 38 H 1.08998 * 110.94082 * 278.79031 * 10 9 8 39 39 H 1.09004 * 111.16121 * 154.86769 * 10 9 8 40 40 H 0.97003 * 120.00216 * 91.15551 * 13 11 10 41 41 H 0.97002 * 120.00478 * 179.97438 * 17 16 14 42 42 H 1.09007 * 109.47427 * 175.62501 * 24 22 8 43 43 H 1.09001 * 109.47180 * 295.61977 * 24 22 8 44 44 H 1.08997 * 109.47178 * 55.61842 * 24 22 8 45 45 H 1.07995 * 119.15761 * 179.97438 * 27 26 25 46 46 H 1.08007 * 120.04055 * 179.97438 * 28 27 26 47 47 H 1.07997 * 120.92952 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1878 1.1814 0.0000 4 6 3.5762 1.2081 0.0058 5 6 4.3079 0.0293 -0.0001 6 6 5.7817 0.0677 0.0004 7 8 6.4170 -0.9660 -0.0807 8 7 6.4250 1.2486 0.0907 9 6 7.8845 1.4403 0.0107 10 6 8.0702 2.9104 -0.4481 11 6 6.9106 3.6171 0.3023 12 1 7.2017 3.8552 1.3254 13 7 6.4930 4.8269 -0.4108 14 6 7.1015 6.0240 -0.1430 15 1 7.8897 6.0762 0.5937 16 6 6.7055 7.1703 -0.8182 17 7 5.7454 7.1065 -1.7161 18 14 7.5362 8.8032 -0.4533 19 1 6.8082 9.4955 0.6402 20 1 8.9412 8.5618 -0.0373 21 1 7.5197 9.6504 -1.6728 22 6 5.7875 2.5588 0.2864 23 1 5.0983 2.7619 -0.5333 24 6 5.0357 2.5780 1.6189 25 6 3.6240 -1.2127 -0.0005 26 7 4.2930 -2.3663 -0.0004 27 6 3.6662 -3.5192 -0.0003 28 6 2.2759 -3.5958 -0.0007 29 6 1.5304 -2.4509 -0.0007 30 6 2.2083 -1.2168 -0.0005 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3634 -0.8898 -0.5142 34 1 1.6385 2.1113 -0.0004 35 1 4.0922 2.1569 0.0102 36 1 8.3410 1.2906 0.9891 37 1 8.3174 0.7565 -0.7194 38 1 7.9489 2.9999 -1.5277 39 1 9.0368 3.3024 -0.1313 40 1 5.7853 4.7799 -1.0726 41 1 5.4684 7.9076 -2.1878 42 1 4.6313 3.5751 1.7937 43 1 4.2200 1.8557 1.5863 44 1 5.7202 2.3168 2.4260 45 1 4.2434 -4.4319 -0.0007 46 1 1.7875 -4.5592 -0.0010 47 1 0.4512 -2.4913 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986579741.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:04 Heat of formation + Delta-G solvation = 65.220707 kcal Electronic energy + Delta-G solvation = -29614.773393 eV Core-core repulsion = 25763.833804 eV Total energy + Delta-G solvation = -3850.939589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.36898 -41.07062 -38.80860 -38.28572 -35.94335 -35.33520 -33.35152 -33.08342 -31.88739 -31.16376 -30.76807 -28.33236 -26.94142 -25.24967 -24.89731 -24.74693 -24.16016 -22.17131 -21.82196 -20.45980 -19.38480 -19.25190 -18.09927 -17.92478 -17.27513 -17.10790 -16.49890 -16.12023 -16.04760 -15.62038 -15.30659 -15.18651 -14.96081 -14.77036 -14.39939 -14.27649 -14.10871 -13.99377 -13.97964 -13.58302 -13.51133 -13.11529 -12.93793 -12.88303 -12.80375 -12.63950 -12.49923 -12.37605 -12.13669 -12.09038 -11.79523 -11.67716 -11.43660 -11.31183 -11.07415 -10.90415 -10.13683 -9.76409 -9.69136 -9.12443 -9.00563 -7.91775 -5.20934 -0.85532 -0.17356 0.73963 1.52270 1.52820 1.60648 1.70246 1.88411 2.18600 2.58770 3.12451 3.25829 3.35553 3.38928 3.55796 3.68246 3.72053 3.85802 3.89860 3.91780 3.94590 4.05135 4.12742 4.22294 4.34040 4.36055 4.43045 4.49279 4.58020 4.66706 4.72074 4.78078 4.82588 4.86203 4.87325 4.93766 5.04111 5.09483 5.13728 5.18268 5.19389 5.21477 5.31257 5.41634 5.45152 5.57618 5.58394 5.84773 6.28352 6.46626 7.05444 7.19126 7.36883 8.06096 8.31387 9.31086 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.003023 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.896208 B = 9259.115800 C =10558.933972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.022 4.022 3 C -0.150 4.150 4 C -0.080 4.080 5 C -0.164 4.164 6 C 0.566 3.434 7 O -0.551 6.551 8 N -0.609 5.609 9 C 0.113 3.887 10 C -0.145 4.145 11 C 0.175 3.825 12 H 0.074 0.926 13 N -0.723 5.723 14 C -0.237 4.237 15 H 0.080 0.920 16 C -0.068 4.068 17 N -0.965 5.965 18 Si 0.967 3.033 19 H -0.287 1.287 20 H -0.271 1.271 21 H -0.300 1.300 22 C 0.115 3.885 23 H 0.087 0.913 24 C -0.175 4.175 25 C 0.143 3.857 26 N -0.499 5.499 27 C 0.121 3.879 28 C -0.175 4.175 29 C -0.050 4.050 30 C -0.133 4.133 31 H 0.096 0.904 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.160 0.840 35 H 0.179 0.821 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.176 0.824 46 H 0.179 0.821 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 -18.645 5.855 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.023 4.023 3 C -0.168 4.168 4 C -0.099 4.099 5 C -0.168 4.168 6 C 0.357 3.643 7 O -0.430 6.430 8 N -0.343 5.343 9 C -0.010 4.010 10 C -0.186 4.186 11 C 0.065 3.935 12 H 0.092 0.908 13 N -0.363 5.363 14 C -0.368 4.368 15 H 0.097 0.903 16 C -0.261 4.261 17 N -0.616 5.616 18 Si 0.797 3.203 19 H -0.214 1.214 20 H -0.196 1.196 21 H -0.227 1.227 22 C 0.011 3.989 23 H 0.104 0.896 24 C -0.232 4.232 25 C 0.020 3.980 26 N -0.207 5.207 27 C -0.050 4.050 28 C -0.194 4.194 29 C -0.076 4.076 30 C -0.135 4.135 31 H 0.114 0.886 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.177 0.823 35 H 0.195 0.805 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.208 0.792 41 H 0.059 0.941 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.193 0.807 46 H 0.196 0.804 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -12.085 -18.992 5.891 23.269 hybrid contribution -0.074 1.022 -0.427 1.110 sum -12.159 -17.970 5.463 22.375 Atomic orbital electron populations 1.21065 0.87220 1.05021 1.04424 1.20400 0.98365 0.90991 0.92529 1.21129 0.93098 0.99709 1.02868 1.23359 0.96193 0.99740 0.90583 1.19689 0.92181 0.93323 1.11626 1.18019 0.87680 0.81929 0.76649 1.90762 1.68559 1.32711 1.50990 1.48486 1.08345 1.05907 1.71600 1.22250 0.80207 0.96995 1.01502 1.23446 1.01362 0.93119 1.00696 1.21372 0.91174 0.85086 0.95856 0.90768 1.42428 1.43752 1.03425 1.46647 1.19555 1.13781 0.86244 1.17262 0.90252 1.25453 1.00042 1.01056 0.99553 1.69789 1.33180 1.28665 1.29929 0.85233 0.78438 0.80231 0.76385 1.21420 1.19618 1.22731 1.22200 0.95681 0.82525 0.98494 0.89604 1.22739 1.01024 1.03916 0.95531 1.18833 0.90528 0.91576 0.97060 1.68260 1.40882 0.98589 1.12941 1.23703 0.93842 0.95908 0.91572 1.22309 0.94357 1.01373 1.01406 1.21970 1.02265 0.89993 0.93355 1.18960 0.92651 0.96435 1.05444 0.88599 0.89423 0.89239 0.82289 0.80516 0.90492 0.91473 0.92400 0.89382 0.79191 0.94054 0.89764 0.90159 0.91714 0.80690 0.80410 0.80227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.53 71.23 0.68 -0.48 16 2 C -0.02 -0.41 5.89 -19.77 -0.12 -0.53 16 3 C -0.15 -3.25 9.57 21.98 0.21 -3.04 16 4 C -0.08 -2.22 6.19 22.54 0.14 -2.08 16 5 C -0.16 -5.55 5.62 -19.86 -0.11 -5.66 16 6 C 0.57 21.81 7.62 86.67 0.66 22.47 16 7 O -0.55 -24.64 15.49 -4.04 -0.06 -24.70 16 8 N -0.61 -21.10 3.07 -802.99 -2.46 -23.56 16 9 C 0.11 3.68 6.89 86.93 0.60 4.28 16 10 C -0.15 -4.98 6.79 32.06 0.22 -4.76 16 11 C 0.18 6.40 3.12 46.18 0.14 6.54 16 12 H 0.07 2.66 7.81 -2.39 -0.02 2.64 16 13 N -0.72 -33.25 5.24 -317.31 -1.66 -34.92 16 14 C -0.24 -12.15 9.97 84.03 0.84 -11.31 16 15 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 16 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 17 N -0.97 -55.92 13.06 21.65 0.28 -55.63 16 18 Si 0.97 44.05 29.55 68.60 2.03 46.07 16 19 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 22 C 0.11 3.72 2.45 45.34 0.11 3.83 16 23 H 0.09 2.91 5.56 -2.38 -0.01 2.89 16 24 C -0.17 -4.88 8.12 71.98 0.58 -4.30 16 25 C 0.14 4.58 6.61 40.61 0.27 4.85 16 26 N -0.50 -16.67 8.45 -187.97 -1.59 -18.26 16 27 C 0.12 2.76 11.15 85.02 0.95 3.71 16 28 C -0.18 -2.61 10.03 22.13 0.22 -2.39 16 29 C -0.05 -0.78 9.36 22.52 0.21 -0.57 16 30 C -0.13 -3.08 5.74 -21.29 -0.12 -3.21 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.71 8.08 -2.39 -0.02 0.69 16 33 H 0.09 0.55 6.42 -2.38 -0.02 0.53 16 34 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 35 H 0.18 5.01 2.06 -7.52 -0.02 4.99 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.07 2.25 8.08 -2.39 -0.02 2.23 16 38 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 40 H 0.38 18.61 7.53 -92.71 -0.70 17.92 16 41 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 42 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 43 H 0.08 2.14 4.29 -2.39 -0.01 2.13 16 44 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.18 2.97 8.06 -2.91 -0.02 2.95 16 46 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 47 H 0.18 1.20 6.42 -2.91 -0.02 1.19 16 Total: -1.00 -75.14 371.72 2.80 -72.35 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: 0.31 Total: 34.54 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 5.95 Total: 4.11 kcal Atomic # 7 Polarization: -126.94 SS G_CDS: -5.43 Total: -132.37 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.06 Total: -24.70 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -75.14 2.80 -72.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986579741.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.566 kcal (2) G-P(sol) polarization free energy of solvation -75.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds