Wall clock time and date at job start Tue Mar 31 2020 22:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39313 * 119.12003 * 2 1 4 4 C 1.36572 * 119.91019 * 179.97438 * 3 2 1 5 5 C 1.40893 * 118.15752 * 0.02562 * 4 3 2 6 6 C 1.40183 * 121.22703 * 180.22648 * 5 4 3 7 7 C 1.38550 * 119.40029 * 180.24470 * 6 5 4 8 8 C 1.47775 * 119.80311 * 179.77726 * 7 6 5 9 9 O 1.21561 * 119.99919 * 24.43712 * 8 7 6 10 10 N 1.34777 * 119.99610 * 204.43838 * 8 7 6 11 11 C 1.47420 * 125.65039 * 5.74102 * 10 8 7 12 12 C 1.54914 * 104.82849 * 155.83683 * 11 10 8 13 13 C 1.55151 * 101.58288 * 37.01018 * 12 11 10 14 14 H 1.09000 * 110.72267 * 205.95654 * 13 12 11 15 15 N 1.46498 * 110.72145 * 82.86048 * 13 12 11 16 16 C 1.36941 * 120.00055 * 150.04008 * 15 13 12 17 17 H 1.07994 * 120.00065 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99829 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99866 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99650 * 180.02562 * 18 16 15 21 21 H 1.48510 * 109.46696 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47301 * 299.99953 * 20 18 16 23 23 H 1.48496 * 109.46965 * 60.00589 * 20 18 16 24 24 C 1.47025 * 125.64241 * 185.70001 * 10 8 7 25 25 H 1.08991 * 109.88322 * 300.51467 * 24 10 8 26 26 C 1.53004 * 109.88156 * 61.68211 * 24 10 8 27 27 C 1.40631 * 120.39334 * 359.50177 * 7 6 5 28 28 C 1.35695 * 120.91949 * 0.27596 * 27 7 6 29 29 C 1.40763 * 120.11238 * 359.97438 * 28 27 7 30 30 N 1.31120 * 119.11559 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47283 * 89.99370 * 1 2 3 32 32 H 1.09000 * 109.47616 * 210.00004 * 1 2 3 33 33 H 1.09005 * 109.47162 * 329.99636 * 1 2 3 34 34 H 1.08007 * 120.04175 * 0.02562 * 3 2 1 35 35 H 1.08004 * 120.92389 * 179.97438 * 4 3 2 36 36 H 1.08003 * 120.30006 * 0.02562 * 6 5 4 37 37 H 1.08996 * 110.36819 * 36.99916 * 11 10 8 38 38 H 1.08999 * 110.36922 * 274.67183 * 11 10 8 39 39 H 1.09002 * 111.00542 * 278.93493 * 12 11 10 40 40 H 1.08993 * 111.03592 * 155.09915 * 12 11 10 41 41 H 0.97003 * 120.00342 * 330.04203 * 15 13 12 42 42 H 0.97002 * 119.99441 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47170 * 182.73982 * 26 24 10 44 44 H 1.09001 * 109.46685 * 302.73214 * 26 24 10 45 45 H 1.08993 * 109.47564 * 62.73545 * 26 24 10 46 46 H 1.08003 * 119.54086 * 180.25190 * 27 7 6 47 47 H 1.07996 * 119.94690 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2170 0.0000 4 6 3.5505 1.2359 0.0005 5 6 4.2324 0.0030 0.0005 6 6 5.6332 -0.0528 0.0058 7 6 6.2648 -1.2859 0.0004 8 6 7.7409 -1.3551 0.0009 9 8 8.3926 -0.4281 0.4411 10 7 8.3645 -2.4458 -0.4867 11 6 7.7081 -3.5837 -1.1559 12 6 8.8124 -4.2141 -2.0406 13 6 10.0650 -4.0496 -1.1399 14 1 10.9717 -4.0109 -1.7436 15 7 10.1439 -5.1344 -0.1585 16 6 11.3639 -5.5598 0.2953 17 1 12.2678 -5.0952 -0.0699 18 6 11.4385 -6.5873 1.2257 19 7 10.3368 -7.1531 1.6711 20 14 13.1027 -7.1670 1.8453 21 1 12.9105 -8.2670 2.8244 22 1 13.9128 -7.6586 0.7019 23 1 13.8075 -6.0369 2.5018 24 6 9.8123 -2.6975 -0.4401 25 1 10.3437 -1.9036 -0.9647 26 6 10.2815 -2.7688 1.0145 27 6 5.5095 -2.4722 0.0003 28 6 4.1531 -2.4351 -0.0001 29 6 3.4804 -1.1987 0.0000 30 7 2.1450 -1.1455 -0.0005 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6313 2.1444 0.0004 35 1 4.0927 2.1699 0.0001 36 1 6.2147 0.8573 0.0104 37 1 6.8805 -3.2346 -1.7733 38 1 7.3548 -4.3048 -0.4188 39 1 8.9273 -3.6631 -2.9740 40 1 8.6056 -5.2667 -2.2337 41 1 9.3320 -5.5515 0.1698 42 1 10.3890 -7.8714 2.3209 43 1 11.3624 -2.9069 1.0412 44 1 10.0209 -1.8423 1.5260 45 1 9.7956 -3.6079 1.5123 46 1 6.0161 -3.4260 0.0002 47 1 3.5886 -3.3558 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987234482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:08 Heat of formation + Delta-G solvation = 45.061893 kcal Electronic energy + Delta-G solvation = -28927.520881 eV Core-core repulsion = 25075.707140 eV Total energy + Delta-G solvation = -3851.813741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.17122 -39.98905 -37.78380 -36.87997 -34.15163 -33.72635 -32.47648 -31.39840 -30.74465 -30.28303 -29.10659 -27.89240 -25.44064 -24.07336 -23.96252 -23.30362 -22.27893 -22.11595 -20.15049 -19.02521 -18.38797 -17.58275 -17.16137 -16.57506 -16.04792 -15.68228 -15.10226 -14.95552 -14.67650 -14.59372 -14.11689 -13.89874 -13.78649 -13.55425 -13.38723 -13.27509 -13.21030 -12.91084 -12.76234 -12.58040 -12.43037 -12.15548 -11.67097 -11.53826 -11.38729 -11.29826 -10.91232 -10.86672 -10.82264 -10.64392 -10.44499 -10.15501 -10.09335 -9.76564 -9.71318 -9.60586 -8.98289 -8.90140 -8.49731 -8.22742 -7.07246 -5.84666 -3.14251 0.05524 0.48614 1.71991 2.34532 3.21478 3.27763 3.40504 3.45820 3.46062 3.87944 3.91003 4.29412 4.40854 4.50229 4.52876 4.54291 4.80448 4.87967 4.92123 5.05053 5.10963 5.20302 5.23554 5.25608 5.34690 5.53179 5.55096 5.60547 5.62446 5.66661 5.72031 5.79066 5.82188 5.86604 6.06336 6.07508 6.15426 6.20407 6.25823 6.28671 6.40709 6.53053 6.58945 6.64006 6.81143 6.99577 7.34584 7.63758 7.67692 7.83265 8.32498 8.38787 9.44905 9.97798 10.33101 11.37225 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022062 B = 0.002437 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.871038 B =11488.583844 C =11951.595644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.162 3.838 3 C -0.180 4.180 4 C -0.044 4.044 5 C -0.118 4.118 6 C -0.033 4.033 7 C -0.121 4.121 8 C 0.568 3.432 9 O -0.542 6.542 10 N -0.597 5.597 11 C 0.097 3.903 12 C -0.147 4.147 13 C 0.170 3.830 14 H 0.076 0.924 15 N -0.708 5.708 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.008 4.008 19 N -0.930 5.930 20 Si 0.906 3.094 21 H -0.292 1.292 22 H -0.286 1.286 23 H -0.285 1.285 24 C 0.109 3.891 25 H 0.061 0.939 26 C -0.137 4.137 27 C -0.082 4.082 28 C -0.102 4.102 29 C 0.147 3.853 30 N -0.479 5.479 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.062 0.938 44 H 0.038 0.962 45 H 0.075 0.925 46 H 0.150 0.850 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.867 14.652 -7.012 24.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.009 3.991 3 C -0.200 4.200 4 C -0.070 4.070 5 C -0.120 4.120 6 C -0.053 4.053 7 C -0.124 4.124 8 C 0.357 3.643 9 O -0.421 6.421 10 N -0.329 5.329 11 C -0.026 4.026 12 C -0.186 4.186 13 C 0.058 3.942 14 H 0.094 0.906 15 N -0.347 5.347 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.212 1.212 23 H -0.212 1.212 24 C 0.003 3.997 25 H 0.080 0.920 26 C -0.195 4.195 27 C -0.101 4.101 28 C -0.120 4.120 29 C 0.026 3.974 30 N -0.188 5.188 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.094 0.906 46 H 0.167 0.833 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.722 14.251 -6.691 23.705 hybrid contribution 1.082 0.310 0.597 1.274 sum -16.640 14.562 -6.095 22.937 Atomic orbital electron populations 1.20796 0.88583 1.03744 1.03335 1.21549 0.97205 0.88252 0.92089 1.21692 0.94965 0.99275 1.04039 1.21542 0.94493 0.97276 0.93677 1.18770 0.94328 0.94301 1.04609 1.21368 0.92242 0.97829 0.93878 1.20020 0.93648 0.94021 1.04754 1.17822 0.86560 0.81608 0.78310 1.90753 1.66928 1.36733 1.47658 1.48491 1.09276 1.18406 1.56739 1.22604 0.96269 0.88277 0.95450 1.23199 0.96069 1.01595 0.97743 1.21249 0.95837 0.87034 0.90125 0.90578 1.42329 1.06630 1.37803 1.47911 1.19148 0.85414 1.13582 1.19073 0.91084 1.24725 0.96881 0.99066 0.99817 1.69638 1.25807 1.27769 1.34556 0.86296 0.83556 0.78124 0.78364 1.21752 1.21243 1.21203 1.22767 0.78505 0.99511 0.98898 0.92045 1.21811 1.01887 1.01004 0.94792 1.21610 0.93857 0.98988 0.95690 1.20699 0.93739 0.96519 1.01051 1.18973 0.89010 0.92968 0.96474 1.67897 1.08393 1.28719 1.13801 0.90061 0.90191 0.90480 0.84455 0.84075 0.84088 0.90979 0.90736 0.90955 0.89320 0.78079 0.93372 0.91874 0.94281 0.90641 0.83298 0.84146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.14 36.00 0.37 -0.29 16 2 C 0.16 1.55 6.78 -82.50 -0.56 0.99 16 3 C -0.18 -1.46 9.64 -39.78 -0.38 -1.84 16 4 C -0.04 -0.41 9.89 -39.18 -0.39 -0.79 16 5 C -0.12 -1.42 5.74 -106.82 -0.61 -2.03 16 6 C -0.03 -0.43 9.34 -38.74 -0.36 -0.79 16 7 C -0.12 -1.74 5.66 -104.98 -0.59 -2.33 16 8 C 0.57 9.75 7.36 -12.36 -0.09 9.65 16 9 O -0.54 -10.88 15.78 5.31 0.08 -10.79 16 10 N -0.60 -9.82 3.06 -164.15 -0.50 -10.33 16 11 C 0.10 1.34 4.91 -2.53 -0.01 1.32 16 12 C -0.15 -2.09 6.69 -24.58 -0.16 -2.26 16 13 C 0.17 3.07 3.52 -66.10 -0.23 2.84 16 14 H 0.08 1.37 8.06 -51.93 -0.42 0.95 16 15 N -0.71 -15.89 3.65 -51.65 -0.19 -16.08 16 16 C -0.24 -6.16 8.80 -15.06 -0.13 -6.29 16 17 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 19 N -0.93 -26.63 13.06 55.49 0.72 -25.90 16 20 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.11 1.97 3.41 -66.95 -0.23 1.74 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 C -0.14 -2.82 8.19 37.16 0.30 -2.51 16 27 C -0.08 -1.04 7.96 -39.59 -0.32 -1.36 16 28 C -0.10 -1.24 9.95 -39.54 -0.39 -1.63 16 29 C 0.15 1.89 6.61 -84.78 -0.56 1.33 16 30 N -0.48 -5.88 10.23 -7.17 -0.07 -5.96 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 34 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 35 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.14 1.69 7.81 -52.48 -0.41 1.28 16 37 H 0.07 0.84 6.83 -51.93 -0.35 0.48 16 38 H 0.07 1.06 6.80 -51.93 -0.35 0.70 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.38 9.25 7.84 -40.82 -0.32 8.93 16 42 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 43 H 0.06 1.33 7.81 -51.93 -0.41 0.92 16 44 H 0.04 0.81 6.97 -51.93 -0.36 0.45 16 45 H 0.07 1.75 7.08 -51.93 -0.37 1.38 16 46 H 0.15 1.81 4.54 -52.48 -0.24 1.57 16 47 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 379.58 15.07 5.72 5.72 Total: -1.00 -31.72 379.58 -10.29 -42.01 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.58 Total: 9.27 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -4.46 Total: -4.58 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: -0.04 Total: -58.26 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.72 -10.29 -42.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987234482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.071 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds