Wall clock time and date at job start Tue Mar 31 2020 22:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39313 * 119.12003 * 2 1 4 4 C 1.36572 * 119.91019 * 179.97438 * 3 2 1 5 5 C 1.40893 * 118.15752 * 0.02562 * 4 3 2 6 6 C 1.40183 * 121.22703 * 180.22648 * 5 4 3 7 7 C 1.38550 * 119.40029 * 180.24470 * 6 5 4 8 8 C 1.47775 * 119.80311 * 179.77726 * 7 6 5 9 9 O 1.21561 * 119.99919 * 24.43712 * 8 7 6 10 10 N 1.34777 * 119.99610 * 204.43838 * 8 7 6 11 11 C 1.47420 * 125.65039 * 5.74102 * 10 8 7 12 12 C 1.54914 * 104.82849 * 155.83683 * 11 10 8 13 13 C 1.55151 * 101.58288 * 37.01018 * 12 11 10 14 14 H 1.09000 * 110.72267 * 205.95654 * 13 12 11 15 15 N 1.46498 * 110.72145 * 82.86048 * 13 12 11 16 16 C 1.36941 * 120.00055 * 150.04008 * 15 13 12 17 17 H 1.07994 * 120.00065 * 0.02562 * 16 15 13 18 18 C 1.38817 * 119.99829 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99866 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99650 * 180.02562 * 18 16 15 21 21 H 1.48510 * 109.46696 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.47301 * 299.99953 * 20 18 16 23 23 H 1.48496 * 109.46965 * 60.00589 * 20 18 16 24 24 C 1.47025 * 125.64241 * 185.70001 * 10 8 7 25 25 H 1.08991 * 109.88322 * 300.51467 * 24 10 8 26 26 C 1.53004 * 109.88156 * 61.68211 * 24 10 8 27 27 C 1.40631 * 120.39334 * 359.50177 * 7 6 5 28 28 C 1.35695 * 120.91949 * 0.27596 * 27 7 6 29 29 C 1.40763 * 120.11238 * 359.97438 * 28 27 7 30 30 N 1.31120 * 119.11559 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.47283 * 89.99370 * 1 2 3 32 32 H 1.09000 * 109.47616 * 210.00004 * 1 2 3 33 33 H 1.09005 * 109.47162 * 329.99636 * 1 2 3 34 34 H 1.08007 * 120.04175 * 0.02562 * 3 2 1 35 35 H 1.08004 * 120.92389 * 179.97438 * 4 3 2 36 36 H 1.08003 * 120.30006 * 0.02562 * 6 5 4 37 37 H 1.08996 * 110.36819 * 36.99916 * 11 10 8 38 38 H 1.08999 * 110.36922 * 274.67183 * 11 10 8 39 39 H 1.09002 * 111.00542 * 278.93493 * 12 11 10 40 40 H 1.08993 * 111.03592 * 155.09915 * 12 11 10 41 41 H 0.97003 * 120.00342 * 330.04203 * 15 13 12 42 42 H 0.97002 * 119.99441 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47170 * 182.73982 * 26 24 10 44 44 H 1.09001 * 109.46685 * 302.73214 * 26 24 10 45 45 H 1.08993 * 109.47564 * 62.73545 * 26 24 10 46 46 H 1.08003 * 119.54086 * 180.25190 * 27 7 6 47 47 H 1.07996 * 119.94690 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2170 0.0000 4 6 3.5505 1.2359 0.0005 5 6 4.2324 0.0030 0.0005 6 6 5.6332 -0.0528 0.0058 7 6 6.2648 -1.2859 0.0004 8 6 7.7409 -1.3551 0.0009 9 8 8.3926 -0.4281 0.4411 10 7 8.3645 -2.4458 -0.4867 11 6 7.7081 -3.5837 -1.1559 12 6 8.8124 -4.2141 -2.0406 13 6 10.0650 -4.0496 -1.1399 14 1 10.9717 -4.0109 -1.7436 15 7 10.1439 -5.1344 -0.1585 16 6 11.3639 -5.5598 0.2953 17 1 12.2678 -5.0952 -0.0699 18 6 11.4385 -6.5873 1.2257 19 7 10.3368 -7.1531 1.6711 20 14 13.1027 -7.1670 1.8453 21 1 12.9105 -8.2670 2.8244 22 1 13.9128 -7.6586 0.7019 23 1 13.8075 -6.0369 2.5018 24 6 9.8123 -2.6975 -0.4401 25 1 10.3437 -1.9036 -0.9647 26 6 10.2815 -2.7688 1.0145 27 6 5.5095 -2.4722 0.0003 28 6 4.1531 -2.4351 -0.0001 29 6 3.4804 -1.1987 0.0000 30 7 2.1450 -1.1455 -0.0005 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6313 2.1444 0.0004 35 1 4.0927 2.1699 0.0001 36 1 6.2147 0.8573 0.0104 37 1 6.8805 -3.2346 -1.7733 38 1 7.3548 -4.3048 -0.4188 39 1 8.9273 -3.6631 -2.9740 40 1 8.6056 -5.2667 -2.2337 41 1 9.3320 -5.5515 0.1698 42 1 10.3890 -7.8714 2.3209 43 1 11.3624 -2.9069 1.0412 44 1 10.0209 -1.8423 1.5260 45 1 9.7956 -3.6079 1.5123 46 1 6.0161 -3.4260 0.0002 47 1 3.5886 -3.3558 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987234482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:07 Heat of formation + Delta-G solvation = 26.663944 kcal Electronic energy + Delta-G solvation = -28928.318676 eV Core-core repulsion = 25075.707140 eV Total energy + Delta-G solvation = -3852.611536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.09329 -41.20391 -39.07177 -37.94797 -35.81636 -34.57634 -33.64737 -32.81205 -32.13453 -31.17850 -30.61598 -28.81869 -26.95450 -25.42990 -25.11328 -24.58375 -23.26529 -23.10532 -21.43366 -20.31005 -19.49828 -19.27179 -18.29074 -17.62546 -17.26684 -16.84015 -16.34643 -16.19318 -15.76017 -15.55528 -15.44685 -15.27882 -15.17783 -14.77099 -14.67431 -14.43578 -14.09542 -13.96168 -13.90242 -13.73718 -13.17575 -13.10547 -13.04535 -12.99539 -12.76875 -12.55622 -12.40314 -12.34446 -12.24844 -12.18441 -11.77572 -11.67289 -11.57283 -11.49453 -11.04977 -10.88667 -10.52428 -9.77845 -9.67281 -9.30519 -8.98624 -7.90538 -5.17364 -0.81712 -0.36424 0.84594 1.37320 1.49629 1.50923 1.56019 1.94706 2.15629 2.58381 3.00682 3.14207 3.34571 3.45706 3.53306 3.62840 3.69809 3.84216 3.90106 3.96995 3.99874 4.03149 4.21475 4.27302 4.37886 4.42499 4.53277 4.56841 4.66164 4.70525 4.78904 4.81430 4.82840 4.85540 4.93566 4.98070 5.01544 5.10233 5.18969 5.20632 5.21822 5.24589 5.28144 5.46038 5.52205 5.54912 5.60597 5.74854 6.30623 6.52453 6.89549 7.05499 7.39120 8.11241 8.35449 9.31999 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022062 B = 0.002437 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.871038 B =11488.583844 C =11951.595644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.159 3.841 3 C -0.171 4.171 4 C -0.048 4.048 5 C -0.133 4.133 6 C -0.026 4.026 7 C -0.143 4.143 8 C 0.566 3.434 9 O -0.580 6.580 10 N -0.598 5.598 11 C 0.098 3.902 12 C -0.132 4.132 13 C 0.164 3.836 14 H 0.082 0.918 15 N -0.714 5.714 16 C -0.227 4.227 17 H 0.076 0.924 18 C -0.070 4.070 19 N -0.965 5.965 20 Si 0.961 3.039 21 H -0.301 1.301 22 H -0.277 1.277 23 H -0.285 1.285 24 C 0.114 3.886 25 H 0.068 0.932 26 C -0.122 4.122 27 C -0.084 4.084 28 C -0.104 4.104 29 C 0.131 3.869 30 N -0.510 5.510 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.178 0.822 35 H 0.169 0.831 36 H 0.146 0.854 37 H 0.101 0.899 38 H 0.069 0.931 39 H 0.100 0.900 40 H 0.092 0.908 41 H 0.376 0.624 42 H 0.248 0.752 43 H 0.052 0.948 44 H 0.029 0.971 45 H 0.045 0.955 46 H 0.151 0.849 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.867 16.629 -8.564 27.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.006 3.994 3 C -0.190 4.190 4 C -0.073 4.073 5 C -0.136 4.136 6 C -0.046 4.046 7 C -0.146 4.146 8 C 0.356 3.644 9 O -0.462 6.462 10 N -0.329 5.329 11 C -0.024 4.024 12 C -0.171 4.171 13 C 0.053 3.947 14 H 0.100 0.900 15 N -0.352 5.352 16 C -0.359 4.359 17 H 0.094 0.906 18 C -0.262 4.262 19 N -0.616 5.616 20 Si 0.791 3.209 21 H -0.228 1.228 22 H -0.203 1.203 23 H -0.211 1.211 24 C 0.008 3.992 25 H 0.086 0.914 26 C -0.181 4.181 27 C -0.103 4.103 28 C -0.123 4.123 29 C 0.010 3.990 30 N -0.220 5.220 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.195 0.805 35 H 0.187 0.813 36 H 0.163 0.837 37 H 0.119 0.881 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.208 0.792 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.049 0.951 45 H 0.064 0.936 46 H 0.169 0.831 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.725 16.251 -8.294 26.869 hybrid contribution 1.521 -0.113 1.048 1.850 sum -18.204 16.137 -7.246 25.383 Atomic orbital electron populations 1.20929 0.86106 1.04812 1.04481 1.22300 0.98966 0.88203 0.89897 1.22140 0.94699 1.00301 1.01876 1.21925 0.95261 0.97217 0.92886 1.18946 0.93868 0.95454 1.05285 1.21476 0.92885 0.97450 0.92782 1.19828 0.91813 0.95284 1.07715 1.18281 0.87727 0.81017 0.77341 1.90716 1.68010 1.38121 1.49358 1.48507 1.08622 1.18993 1.56788 1.22738 0.96844 0.87325 0.95458 1.23133 0.93598 1.02380 0.97994 1.21453 0.98136 0.85378 0.89742 0.90035 1.42417 1.05274 1.38754 1.48784 1.19474 0.86671 1.12180 1.17526 0.90593 1.25376 0.99421 1.00293 1.01142 1.69777 1.27385 1.28659 1.35740 0.85402 0.80546 0.77212 0.77740 1.22785 1.20349 1.21123 1.22534 0.79968 0.99719 0.96992 0.91406 1.21623 1.00867 0.99125 0.96466 1.21529 0.94026 0.98485 0.96306 1.20830 0.93524 0.97136 1.00781 1.19200 0.89719 0.93408 0.96672 1.67953 1.08077 1.30377 1.15635 0.88673 0.90882 0.87687 0.80466 0.81338 0.83658 0.88127 0.91290 0.88111 0.88994 0.79168 0.94295 0.92859 0.95147 0.93560 0.83146 0.83137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.14 71.23 0.72 -0.21 16 2 C 0.16 2.60 6.78 42.92 0.29 2.89 16 3 C -0.17 -2.13 9.64 22.14 0.21 -1.92 16 4 C -0.05 -0.74 9.89 22.53 0.22 -0.52 16 5 C -0.13 -3.03 5.74 -21.29 -0.12 -3.15 16 6 C -0.03 -0.66 9.34 22.82 0.21 -0.45 16 7 C -0.14 -4.11 5.66 -20.10 -0.11 -4.23 16 8 C 0.57 19.61 7.36 86.77 0.64 20.25 16 9 O -0.58 -23.81 15.78 -3.91 -0.06 -23.87 16 10 N -0.60 -19.58 3.06 -791.51 -2.43 -22.01 16 11 C 0.10 2.61 4.91 86.86 0.43 3.03 16 12 C -0.13 -3.52 6.69 31.99 0.21 -3.31 16 13 C 0.16 5.78 3.52 46.18 0.16 5.94 16 14 H 0.08 2.81 8.06 -2.39 -0.02 2.79 16 15 N -0.71 -32.32 3.65 -317.34 -1.16 -33.48 16 16 C -0.23 -11.64 8.80 84.03 0.74 -10.90 16 17 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 18 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 19 N -0.96 -56.71 13.06 21.65 0.28 -56.43 16 20 Si 0.96 45.21 29.55 68.60 2.03 47.23 16 21 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 24 C 0.11 4.12 3.41 45.34 0.15 4.27 16 25 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 26 C -0.12 -5.20 8.19 71.98 0.59 -4.61 16 27 C -0.08 -2.13 7.96 22.26 0.18 -1.96 16 28 C -0.10 -2.52 9.95 22.30 0.22 -2.29 16 29 C 0.13 3.26 6.61 40.35 0.27 3.53 16 30 N -0.51 -11.83 10.23 -176.59 -1.81 -13.64 16 31 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.10 0.36 8.07 -2.38 -0.02 0.34 16 34 H 0.18 0.76 8.06 -2.91 -0.02 0.74 16 35 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 36 H 0.15 3.42 7.81 -2.91 -0.02 3.40 16 37 H 0.10 2.15 6.83 -2.39 -0.02 2.14 16 38 H 0.07 1.94 6.80 -2.39 -0.02 1.93 16 39 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.38 18.42 7.84 -92.71 -0.73 17.69 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.05 2.30 7.81 -2.39 -0.02 2.28 16 44 H 0.03 1.30 6.97 -2.39 -0.02 1.29 16 45 H 0.05 2.22 7.08 -2.39 -0.02 2.20 16 46 H 0.15 3.66 4.54 -2.91 -0.01 3.65 16 47 H 0.15 3.17 8.06 -2.91 -0.02 3.14 16 Total: -1.00 -71.01 379.58 2.62 -68.39 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.27 Total: 30.79 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 5.48 Total: 3.01 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -5.11 Total: -125.56 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.06 Total: -23.87 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -71.01 2.62 -68.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987234482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.053 kcal (2) G-P(sol) polarization free energy of solvation -71.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds