Wall clock time and date at job start Tue Mar 31 2020 22:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39315 * 119.11666 * 2 1 4 4 C 1.36572 * 119.90363 * 179.97438 * 3 2 1 5 5 C 1.40898 * 118.15817 * 0.02562 * 4 3 2 6 6 C 1.40183 * 121.20893 * 180.02562 * 5 4 3 7 7 C 1.38547 * 119.39651 * 180.02562 * 6 5 4 8 8 C 1.47772 * 119.80390 * 180.02562 * 7 6 5 9 9 O 1.21564 * 119.99989 * 343.59485 * 8 7 6 10 10 N 1.34776 * 120.00088 * 163.60238 * 8 7 6 11 11 C 1.47419 * 125.64818 * 186.58584 * 10 8 7 12 12 C 1.54910 * 104.83438 * 204.08559 * 11 10 8 13 13 C 1.55158 * 101.58178 * 322.99528 * 12 11 10 14 14 H 1.09004 * 110.71922 * 276.95682 * 13 12 11 15 15 N 1.46501 * 110.72198 * 153.86391 * 13 12 11 16 16 C 1.36933 * 120.00131 * 86.45265 * 15 13 12 17 17 H 1.07997 * 120.00232 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99906 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99999 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99754 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47202 * 90.00484 * 20 18 16 22 22 H 1.48503 * 109.46858 * 210.00018 * 20 18 16 23 23 H 1.48492 * 109.47317 * 330.00044 * 20 18 16 24 24 C 1.47025 * 125.64816 * 6.27102 * 10 8 7 25 25 H 1.09006 * 109.87938 * 59.56722 * 24 10 8 26 26 C 1.53002 * 109.88328 * 298.40257 * 24 10 8 27 27 C 1.40632 * 120.39160 * 359.95820 * 7 6 5 28 28 C 1.35705 * 120.92355 * 0.06208 * 27 7 6 29 29 C 1.40759 * 120.11165 * 359.95719 * 28 27 7 30 30 N 1.31124 * 119.11154 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.46529 * 269.97476 * 1 2 3 32 32 H 1.09000 * 109.47175 * 29.97136 * 1 2 3 33 33 H 1.08995 * 109.46970 * 149.98039 * 1 2 3 34 34 H 1.08004 * 120.04562 * 359.97438 * 3 2 1 35 35 H 1.07996 * 120.92469 * 179.97438 * 4 3 2 36 36 H 1.07996 * 120.30339 * 0.04318 * 6 5 4 37 37 H 1.08994 * 110.36856 * 322.92398 * 11 10 8 38 38 H 1.09004 * 110.36486 * 85.14179 * 11 10 8 39 39 H 1.09002 * 111.00155 * 81.06471 * 12 11 10 40 40 H 1.08993 * 111.00749 * 204.92036 * 12 11 10 41 41 H 0.97007 * 119.99719 * 266.44899 * 15 13 12 42 42 H 0.96999 * 119.99875 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47422 * 39.59515 * 26 24 10 44 44 H 1.08999 * 109.46894 * 159.60157 * 26 24 10 45 45 H 1.08995 * 109.46824 * 279.59407 * 26 24 10 46 46 H 1.08005 * 119.54071 * 180.02562 * 27 7 6 47 47 H 1.07998 * 119.94395 * 180.22691 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5505 1.2359 0.0005 5 6 4.2324 0.0029 0.0005 6 6 5.6331 -0.0525 0.0016 7 6 6.2650 -1.2855 0.0010 8 6 7.7411 -1.3544 0.0027 9 8 8.3957 -0.3735 -0.2928 10 7 8.3617 -2.5046 0.3316 11 6 9.8152 -2.6769 0.5070 12 6 10.0691 -4.1843 0.2558 13 6 8.8072 -4.8232 0.8936 14 1 8.9345 -4.9365 1.9703 15 7 8.5089 -6.1150 0.2703 16 6 9.1080 -7.2547 0.7362 17 1 9.8008 -7.2014 1.5630 18 6 8.8248 -8.4788 0.1459 19 7 7.9801 -8.5439 -0.8613 20 14 9.6427 -10.0335 0.7811 21 1 8.8025 -10.6344 1.8479 22 1 9.7958 -11.0029 -0.3333 23 1 10.9799 -9.6991 1.3336 24 6 7.7006 -3.7939 0.5814 25 1 7.1474 -4.1046 -0.3050 26 6 6.7505 -3.6691 1.7741 27 6 5.5099 -2.4719 0.0002 28 6 4.1533 -2.4351 -0.0012 29 6 3.4804 -1.1988 -0.0011 30 7 2.1449 -1.1456 -0.0005 31 1 -0.3632 -0.0005 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6313 2.1445 -0.0004 35 1 4.0927 2.1698 0.0001 36 1 6.2145 0.8577 0.0031 37 1 10.3592 -2.0743 -0.2202 38 1 10.1099 -2.4047 1.5206 39 1 10.1189 -4.3995 -0.8116 40 1 10.9745 -4.5178 0.7627 41 1 7.8868 -6.1629 -0.4725 42 1 7.7826 -9.3992 -1.2741 43 1 6.2398 -2.7070 1.7328 44 1 6.0149 -4.4727 1.7383 45 1 7.3198 -3.7387 2.7009 46 1 6.0167 -3.4257 0.0002 47 1 3.5891 -3.3560 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987234483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:11 Heat of formation + Delta-G solvation = 70.288023 kcal Electronic energy + Delta-G solvation = -29046.956923 eV Core-core repulsion = 25196.237069 eV Total energy + Delta-G solvation = -3850.719854 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33388 -40.22509 -37.74391 -37.17173 -34.27666 -33.74979 -32.85743 -31.54586 -31.14759 -30.14824 -29.18692 -28.01687 -25.46655 -24.00250 -23.95527 -23.20856 -22.31169 -21.95708 -20.43013 -19.58937 -18.58293 -17.60608 -17.05683 -16.61077 -15.90330 -15.86680 -15.31399 -15.08122 -14.81183 -14.51596 -14.27776 -14.05662 -13.92484 -13.59771 -13.39098 -13.27667 -13.12533 -12.93952 -12.72838 -12.48458 -12.40501 -12.23132 -12.02505 -11.68241 -11.48481 -11.31657 -11.09555 -10.94846 -10.87318 -10.76575 -10.57914 -10.31120 -10.14198 -9.87881 -9.74673 -9.68411 -9.01489 -8.75658 -8.56883 -8.33312 -7.11066 -5.88196 -3.19010 0.06728 0.52811 1.73810 2.32652 3.00985 3.22511 3.37589 3.43443 3.44848 3.92042 3.94759 4.30587 4.38600 4.45313 4.51320 4.56733 4.80487 4.85262 4.92214 4.98217 5.10887 5.14044 5.23465 5.27698 5.28929 5.42201 5.43391 5.55442 5.58016 5.64119 5.68241 5.71353 5.76196 5.84171 5.87286 5.92402 6.08779 6.11531 6.19154 6.21786 6.22660 6.32197 6.38670 6.45978 6.56265 6.62630 6.84289 7.59583 7.62595 7.73103 8.19139 8.28741 9.40757 9.92793 10.27541 11.33843 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.002776 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.785576 B =10084.415418 C =11652.239627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.164 3.836 3 C -0.183 4.183 4 C -0.043 4.043 5 C -0.125 4.125 6 C -0.028 4.028 7 C -0.132 4.132 8 C 0.574 3.426 9 O -0.546 6.546 10 N -0.601 5.601 11 C 0.106 3.894 12 C -0.156 4.156 13 C 0.178 3.822 14 H 0.068 0.932 15 N -0.715 5.715 16 C -0.245 4.245 17 H 0.073 0.927 18 C -0.008 4.008 19 N -0.929 5.929 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.107 3.893 25 H 0.091 0.909 26 C -0.175 4.175 27 C -0.091 4.091 28 C -0.113 4.113 29 C 0.154 3.846 30 N -0.479 5.479 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.385 0.615 42 H 0.257 0.743 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.173 0.827 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.814 19.323 3.251 22.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.011 3.989 3 C -0.203 4.203 4 C -0.069 4.069 5 C -0.127 4.127 6 C -0.048 4.048 7 C -0.135 4.135 8 C 0.364 3.636 9 O -0.426 6.426 10 N -0.334 5.334 11 C -0.016 4.016 12 C -0.197 4.197 13 C 0.066 3.934 14 H 0.086 0.914 15 N -0.355 5.355 16 C -0.376 4.376 17 H 0.091 0.909 18 C -0.205 4.205 19 N -0.577 5.577 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.004 3.996 25 H 0.108 0.892 26 C -0.232 4.232 27 C -0.110 4.110 28 C -0.131 4.131 29 C 0.033 3.967 30 N -0.188 5.188 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.220 0.780 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.189 0.811 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.785 18.874 3.156 21.966 hybrid contribution 0.713 -0.125 0.042 0.725 sum -10.072 18.749 3.198 21.522 Atomic orbital electron populations 1.20799 0.88608 1.03736 1.03349 1.21566 0.97218 0.88264 0.91880 1.21677 0.94959 0.99249 1.04366 1.21522 0.94489 0.97208 0.93633 1.18750 0.94277 0.94331 1.05346 1.21359 0.92293 0.97730 0.93437 1.19899 0.93168 0.94131 1.06257 1.17817 0.86959 0.81871 0.77002 1.90750 1.66985 1.35416 1.49411 1.48401 1.08683 1.08747 1.67543 1.22309 0.80047 0.98255 1.01018 1.23594 1.01295 0.91973 1.02859 1.21300 0.89807 0.85367 0.96903 0.91400 1.42323 1.53318 1.00637 1.39268 1.19174 1.20206 0.85150 1.13034 0.90945 1.24757 0.99652 0.97770 0.98310 1.69649 1.37809 1.24918 1.25296 0.86184 0.78896 0.83299 0.77736 1.21608 1.21736 1.20686 1.22352 0.95554 0.83640 0.98092 0.89177 1.22775 0.99780 1.02616 0.98033 1.22542 0.94462 1.00454 0.93559 1.20711 0.93735 0.96567 1.02127 1.19023 0.88977 0.92994 0.95725 1.67924 1.08434 1.28648 1.13840 0.90055 0.90506 0.90151 0.84507 0.84156 0.84065 0.90785 0.91659 0.90520 0.90334 0.78044 0.93310 0.91269 0.90415 0.91826 0.81051 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.14 36.01 0.37 -0.34 16 2 C 0.16 1.64 6.78 -82.49 -0.56 1.09 16 3 C -0.18 -1.54 9.64 -39.78 -0.38 -1.92 16 4 C -0.04 -0.40 9.89 -39.18 -0.39 -0.79 16 5 C -0.13 -1.52 5.74 -106.81 -0.61 -2.14 16 6 C -0.03 -0.36 9.34 -38.74 -0.36 -0.72 16 7 C -0.13 -1.86 5.02 -104.98 -0.53 -2.39 16 8 C 0.57 9.26 7.59 -12.36 -0.09 9.16 16 9 O -0.55 -10.10 16.66 5.31 0.09 -10.01 16 10 N -0.60 -9.26 3.06 -164.15 -0.50 -9.76 16 11 C 0.11 1.56 6.94 -2.53 -0.02 1.55 16 12 C -0.16 -2.54 6.77 -24.58 -0.17 -2.71 16 13 C 0.18 3.15 3.11 -66.09 -0.21 2.95 16 14 H 0.07 1.20 7.49 -51.93 -0.39 0.82 16 15 N -0.71 -16.17 5.25 -51.65 -0.27 -16.44 16 16 C -0.24 -6.28 9.98 -15.06 -0.15 -6.43 16 17 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.93 -26.58 13.06 55.49 0.72 -25.85 16 20 Si 0.91 21.38 29.55 -169.99 -5.02 16.35 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.11 1.64 2.49 -66.95 -0.17 1.47 16 25 H 0.09 1.43 5.75 -51.93 -0.30 1.13 16 26 C -0.17 -2.36 7.73 37.16 0.29 -2.07 16 27 C -0.09 -1.22 6.16 -39.59 -0.24 -1.46 16 28 C -0.11 -1.48 9.95 -39.54 -0.39 -1.87 16 29 C 0.15 2.07 6.61 -84.78 -0.56 1.51 16 30 N -0.48 -6.20 10.23 -7.16 -0.07 -6.27 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.33 8.07 -51.93 -0.42 -0.08 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.14 1.65 7.71 -52.49 -0.40 1.24 16 37 H 0.07 1.10 7.98 -51.93 -0.41 0.69 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.39 9.30 7.51 -40.82 -0.31 8.99 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.07 0.90 4.45 -51.93 -0.23 0.67 16 44 H 0.08 1.03 8.08 -51.93 -0.42 0.62 16 45 H 0.06 0.84 7.60 -51.93 -0.39 0.45 16 46 H 0.17 2.31 2.45 -52.49 -0.13 2.19 16 47 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 376.61 15.07 5.68 5.68 Total: -1.00 -31.39 376.61 -9.99 -41.38 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -6.33 Total: 10.37 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -4.27 Total: -5.44 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.12 Total: -58.33 kcal Atomic # 8 Polarization: -10.10 SS G_CDS: 0.09 Total: -10.01 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.39 -9.99 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987234483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.672 kcal (2) G-P(sol) polarization free energy of solvation -31.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds