Wall clock time and date at job start Tue Mar 31 2020 22:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39315 * 119.11666 * 2 1 4 4 C 1.36572 * 119.90363 * 179.97438 * 3 2 1 5 5 C 1.40898 * 118.15817 * 0.02562 * 4 3 2 6 6 C 1.40183 * 121.20893 * 180.02562 * 5 4 3 7 7 C 1.38547 * 119.39651 * 180.02562 * 6 5 4 8 8 C 1.47772 * 119.80390 * 180.02562 * 7 6 5 9 9 O 1.21564 * 119.99989 * 343.59485 * 8 7 6 10 10 N 1.34776 * 120.00088 * 163.60238 * 8 7 6 11 11 C 1.47419 * 125.64818 * 186.58584 * 10 8 7 12 12 C 1.54910 * 104.83438 * 204.08559 * 11 10 8 13 13 C 1.55158 * 101.58178 * 322.99528 * 12 11 10 14 14 H 1.09004 * 110.71922 * 276.95682 * 13 12 11 15 15 N 1.46501 * 110.72198 * 153.86391 * 13 12 11 16 16 C 1.36933 * 120.00131 * 86.45265 * 15 13 12 17 17 H 1.07997 * 120.00232 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99906 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99999 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99754 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47202 * 90.00484 * 20 18 16 22 22 H 1.48503 * 109.46858 * 210.00018 * 20 18 16 23 23 H 1.48492 * 109.47317 * 330.00044 * 20 18 16 24 24 C 1.47025 * 125.64816 * 6.27102 * 10 8 7 25 25 H 1.09006 * 109.87938 * 59.56722 * 24 10 8 26 26 C 1.53002 * 109.88328 * 298.40257 * 24 10 8 27 27 C 1.40632 * 120.39160 * 359.95820 * 7 6 5 28 28 C 1.35705 * 120.92355 * 0.06208 * 27 7 6 29 29 C 1.40759 * 120.11165 * 359.95719 * 28 27 7 30 30 N 1.31124 * 119.11154 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.46529 * 269.97476 * 1 2 3 32 32 H 1.09000 * 109.47175 * 29.97136 * 1 2 3 33 33 H 1.08995 * 109.46970 * 149.98039 * 1 2 3 34 34 H 1.08004 * 120.04562 * 359.97438 * 3 2 1 35 35 H 1.07996 * 120.92469 * 179.97438 * 4 3 2 36 36 H 1.07996 * 120.30339 * 0.04318 * 6 5 4 37 37 H 1.08994 * 110.36856 * 322.92398 * 11 10 8 38 38 H 1.09004 * 110.36486 * 85.14179 * 11 10 8 39 39 H 1.09002 * 111.00155 * 81.06471 * 12 11 10 40 40 H 1.08993 * 111.00749 * 204.92036 * 12 11 10 41 41 H 0.97007 * 119.99719 * 266.44899 * 15 13 12 42 42 H 0.96999 * 119.99875 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47422 * 39.59515 * 26 24 10 44 44 H 1.08999 * 109.46894 * 159.60157 * 26 24 10 45 45 H 1.08995 * 109.46824 * 279.59407 * 26 24 10 46 46 H 1.08005 * 119.54071 * 180.02562 * 27 7 6 47 47 H 1.07998 * 119.94395 * 180.22691 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5505 1.2359 0.0005 5 6 4.2324 0.0029 0.0005 6 6 5.6331 -0.0525 0.0016 7 6 6.2650 -1.2855 0.0010 8 6 7.7411 -1.3544 0.0027 9 8 8.3957 -0.3735 -0.2928 10 7 8.3617 -2.5046 0.3316 11 6 9.8152 -2.6769 0.5070 12 6 10.0691 -4.1843 0.2558 13 6 8.8072 -4.8232 0.8936 14 1 8.9345 -4.9365 1.9703 15 7 8.5089 -6.1150 0.2703 16 6 9.1080 -7.2547 0.7362 17 1 9.8008 -7.2014 1.5630 18 6 8.8248 -8.4788 0.1459 19 7 7.9801 -8.5439 -0.8613 20 14 9.6427 -10.0335 0.7811 21 1 8.8025 -10.6344 1.8479 22 1 9.7958 -11.0029 -0.3333 23 1 10.9799 -9.6991 1.3336 24 6 7.7006 -3.7939 0.5814 25 1 7.1474 -4.1046 -0.3050 26 6 6.7505 -3.6691 1.7741 27 6 5.5099 -2.4719 0.0002 28 6 4.1533 -2.4351 -0.0012 29 6 3.4804 -1.1988 -0.0011 30 7 2.1449 -1.1456 -0.0005 31 1 -0.3632 -0.0005 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6313 2.1445 -0.0004 35 1 4.0927 2.1698 0.0001 36 1 6.2145 0.8577 0.0031 37 1 10.3592 -2.0743 -0.2202 38 1 10.1099 -2.4047 1.5206 39 1 10.1189 -4.3995 -0.8116 40 1 10.9745 -4.5178 0.7627 41 1 7.8868 -6.1629 -0.4725 42 1 7.7826 -9.3992 -1.2741 43 1 6.2398 -2.7070 1.7328 44 1 6.0149 -4.4727 1.7383 45 1 7.3198 -3.7387 2.7009 46 1 6.0167 -3.4257 0.0002 47 1 3.5891 -3.3560 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987234483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:10 Heat of formation + Delta-G solvation = 51.932528 kcal Electronic energy + Delta-G solvation = -29047.752877 eV Core-core repulsion = 25196.237069 eV Total energy + Delta-G solvation = -3851.515808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.34950 -41.29394 -39.05960 -38.17822 -35.96969 -34.65364 -33.86242 -33.21278 -32.13628 -31.19770 -30.64527 -28.86991 -26.98905 -25.09431 -24.95620 -24.75456 -23.17871 -23.05117 -21.81920 -20.76142 -19.65911 -19.23115 -18.23867 -17.65139 -17.14653 -16.98474 -16.57975 -16.18543 -15.96688 -15.68629 -15.50436 -15.25624 -15.04756 -14.90178 -14.73054 -14.40926 -14.05057 -13.90602 -13.83766 -13.60918 -13.27883 -13.16406 -13.09616 -12.97165 -12.93667 -12.68154 -12.54848 -12.42504 -12.17944 -12.09826 -11.90193 -11.71689 -11.55159 -11.48288 -11.10768 -10.90194 -10.50561 -9.85113 -9.60633 -9.31482 -9.01266 -7.92548 -5.21688 -0.83161 -0.35398 0.83902 1.33396 1.51689 1.51712 1.59891 1.79929 2.15180 2.57977 3.01351 3.12337 3.25636 3.39495 3.52815 3.54591 3.64261 3.78201 3.88411 3.90682 3.93292 3.99005 4.08542 4.23495 4.31499 4.37086 4.39324 4.50474 4.63708 4.66428 4.73332 4.80784 4.82424 4.85431 4.88820 4.91182 4.93400 5.03532 5.12405 5.17899 5.19033 5.21558 5.23199 5.30833 5.41719 5.51556 5.57031 5.75105 6.27190 6.36914 6.91429 6.94412 7.35892 8.06211 8.30094 9.30445 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014923 B = 0.002776 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.785576 B =10084.415418 C =11652.239627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.159 3.841 3 C -0.174 4.174 4 C -0.043 4.043 5 C -0.140 4.140 6 C -0.017 4.017 7 C -0.154 4.154 8 C 0.574 3.426 9 O -0.574 6.574 10 N -0.602 5.602 11 C 0.111 3.889 12 C -0.147 4.147 13 C 0.172 3.828 14 H 0.075 0.925 15 N -0.725 5.725 16 C -0.235 4.235 17 H 0.081 0.919 18 C -0.071 4.071 19 N -0.967 5.967 20 Si 0.968 3.032 21 H -0.288 1.288 22 H -0.301 1.301 23 H -0.269 1.269 24 C 0.119 3.881 25 H 0.082 0.918 26 C -0.166 4.166 27 C -0.091 4.091 28 C -0.122 4.122 29 C 0.138 3.862 30 N -0.515 5.515 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.179 0.821 35 H 0.172 0.828 36 H 0.152 0.848 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.374 0.626 42 H 0.250 0.750 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.166 0.834 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.780 21.838 4.454 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.007 3.993 3 C -0.193 4.193 4 C -0.069 4.069 5 C -0.142 4.142 6 C -0.037 4.037 7 C -0.157 4.157 8 C 0.365 3.635 9 O -0.456 6.456 10 N -0.334 5.334 11 C -0.012 4.012 12 C -0.188 4.188 13 C 0.062 3.938 14 H 0.093 0.907 15 N -0.365 5.365 16 C -0.367 4.367 17 H 0.099 0.901 18 C -0.264 4.264 19 N -0.617 5.617 20 Si 0.798 3.202 21 H -0.216 1.216 22 H -0.228 1.228 23 H -0.194 1.194 24 C 0.015 3.985 25 H 0.100 0.900 26 C -0.223 4.223 27 C -0.110 4.110 28 C -0.141 4.141 29 C 0.016 3.984 30 N -0.226 5.226 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.090 0.910 34 H 0.196 0.804 35 H 0.190 0.810 36 H 0.170 0.830 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.207 0.793 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.183 0.817 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.730 21.421 4.397 24.815 hybrid contribution 0.867 -0.725 -0.326 1.176 sum -10.864 20.697 4.072 23.726 Atomic orbital electron populations 1.20931 0.86226 1.04789 1.04425 1.22315 0.98946 0.88269 0.89755 1.22131 0.94802 1.00168 1.02216 1.21936 0.95174 0.97196 0.92545 1.18944 0.94005 0.95316 1.05922 1.21518 0.92770 0.97503 0.91894 1.19785 0.91987 0.95030 1.08888 1.18092 0.87707 0.81425 0.76248 1.90722 1.67748 1.36231 1.50897 1.48427 1.08942 1.08649 1.67380 1.22318 0.79817 0.96829 1.02193 1.23416 1.00807 0.93056 1.01497 1.21483 0.91322 0.84086 0.96874 0.90734 1.42446 1.53010 1.01808 1.39206 1.19554 1.19007 0.85961 1.12132 0.90098 1.25484 1.01056 1.00650 0.99174 1.69799 1.39954 1.24909 1.27076 0.85221 0.78477 0.79843 0.76691 1.21559 1.22795 1.19375 1.22167 0.94803 0.82932 0.98586 0.90043 1.22688 0.99375 1.03026 0.97234 1.22347 0.94487 0.99938 0.94241 1.20764 0.93679 0.97041 1.02570 1.19194 0.89675 0.93403 0.96077 1.67962 1.08249 1.30493 1.15848 0.88769 0.87542 0.91037 0.80398 0.81009 0.83030 0.90800 0.89618 0.92479 0.89359 0.79305 0.94113 0.90600 0.90495 0.91270 0.81743 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.14 71.24 0.72 -0.37 16 2 C 0.16 2.82 6.78 42.92 0.29 3.11 16 3 C -0.17 -2.27 9.64 22.14 0.21 -2.06 16 4 C -0.04 -0.68 9.89 22.53 0.22 -0.45 16 5 C -0.14 -3.23 5.74 -21.29 -0.12 -3.35 16 6 C -0.02 -0.42 9.34 22.82 0.21 -0.21 16 7 C -0.15 -4.37 5.02 -20.10 -0.10 -4.47 16 8 C 0.57 18.49 7.59 86.76 0.66 19.15 16 9 O -0.57 -21.12 16.66 -3.92 -0.07 -21.18 16 10 N -0.60 -18.44 3.06 -791.52 -2.43 -20.87 16 11 C 0.11 3.17 6.94 86.86 0.60 3.77 16 12 C -0.15 -4.73 6.77 31.99 0.22 -4.51 16 13 C 0.17 6.07 3.11 46.18 0.14 6.21 16 14 H 0.07 2.56 7.49 -2.39 -0.02 2.54 16 15 N -0.73 -33.25 5.25 -317.31 -1.67 -34.92 16 16 C -0.23 -12.04 9.98 84.03 0.84 -11.20 16 17 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 18 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 19 N -0.97 -56.76 13.06 21.65 0.28 -56.48 16 20 Si 0.97 44.32 29.55 68.60 2.03 46.35 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 23 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 24 C 0.12 3.65 2.49 45.34 0.11 3.76 16 25 H 0.08 2.69 5.75 -2.38 -0.01 2.68 16 26 C -0.17 -4.45 7.73 71.98 0.56 -3.90 16 27 C -0.09 -2.50 6.16 22.27 0.14 -2.36 16 28 C -0.12 -3.30 9.95 22.30 0.22 -3.08 16 29 C 0.14 3.66 6.61 40.35 0.27 3.93 16 30 N -0.51 -12.96 10.23 -176.58 -1.81 -14.77 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 0.47 8.07 -2.39 -0.02 0.45 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 35 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 36 H 0.15 3.33 7.71 -2.91 -0.02 3.31 16 37 H 0.07 2.15 7.98 -2.39 -0.02 2.13 16 38 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.37 18.68 7.51 -92.70 -0.70 17.99 16 42 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 43 H 0.08 1.98 4.45 -2.39 -0.01 1.97 16 44 H 0.08 2.07 8.08 -2.39 -0.02 2.05 16 45 H 0.07 1.76 7.60 -2.39 -0.02 1.75 16 46 H 0.17 4.64 2.45 -2.92 -0.01 4.63 16 47 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -68.88 376.61 2.32 -66.56 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: 0.32 Total: 34.73 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: 5.66 Total: 0.58 kcal Atomic # 7 Polarization: -121.42 SS G_CDS: -5.62 Total: -127.03 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.07 Total: -21.18 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -68.88 2.32 -66.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987234483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.491 kcal (2) G-P(sol) polarization free energy of solvation -68.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds