Wall clock time and date at job start Tue Mar 31 2020 22:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39318 * 119.11514 * 2 1 4 4 C 1.36581 * 119.90756 * 179.97438 * 3 2 1 5 5 C 1.40888 * 118.15581 * 359.97438 * 4 3 2 6 6 C 1.40187 * 121.21836 * 180.02562 * 5 4 3 7 7 C 1.38542 * 119.40044 * 179.97438 * 6 5 4 8 8 C 1.47774 * 119.80282 * 179.97438 * 7 6 5 9 9 O 1.21564 * 119.99834 * 146.56776 * 8 7 6 10 10 N 1.34769 * 120.00092 * 326.57068 * 8 7 6 11 11 C 1.47426 * 125.65100 * 3.47750 * 10 8 7 12 12 C 1.54914 * 104.83462 * 204.09175 * 11 10 8 13 13 C 1.55156 * 101.57566 * 322.98800 * 12 11 10 14 14 H 1.09007 * 110.71558 * 153.86881 * 13 12 11 15 15 N 1.46506 * 110.72026 * 276.95729 * 13 12 11 16 16 C 1.36928 * 120.00098 * 209.87168 * 15 13 12 17 17 H 1.07998 * 120.00585 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99873 * 180.02562 * 16 15 13 19 19 N 1.31625 * 120.00061 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00010 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.47356 * 90.00062 * 20 18 16 22 22 H 1.48499 * 109.47132 * 210.00500 * 20 18 16 23 23 H 1.48503 * 109.46930 * 330.00058 * 20 18 16 24 24 C 1.47018 * 125.64871 * 183.16484 * 10 8 7 25 25 H 1.09002 * 109.88251 * 59.55973 * 24 10 8 26 26 C 1.53004 * 109.88181 * 298.39290 * 24 10 8 27 27 C 1.40632 * 120.39328 * 0.02562 * 7 6 5 28 28 C 1.35705 * 120.92112 * 359.97229 * 27 7 6 29 29 C 1.40754 * 120.11210 * 0.02621 * 28 27 7 30 30 N 1.31125 * 119.12032 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46767 * 90.00674 * 1 2 3 32 32 H 1.08999 * 109.47085 * 210.00226 * 1 2 3 33 33 H 1.08991 * 109.47241 * 330.00577 * 1 2 3 34 34 H 1.08007 * 120.04372 * 359.71768 * 3 2 1 35 35 H 1.07994 * 120.92184 * 180.02562 * 4 3 2 36 36 H 1.08000 * 120.29164 * 359.97438 * 6 5 4 37 37 H 1.09009 * 110.36378 * 322.93002 * 11 10 8 38 38 H 1.08992 * 110.37083 * 85.24619 * 11 10 8 39 39 H 1.09004 * 111.00309 * 81.05938 * 12 11 10 40 40 H 1.08995 * 111.00433 * 204.91313 * 12 11 10 41 41 H 0.97002 * 119.99292 * 29.86653 * 15 13 12 42 42 H 0.96995 * 119.99895 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.46648 * 56.71666 * 26 24 10 44 44 H 1.09005 * 109.46983 * 176.71331 * 26 24 10 45 45 H 1.08993 * 109.47139 * 296.70930 * 26 24 10 46 46 H 1.08001 * 119.53868 * 179.97438 * 27 7 6 47 47 H 1.08002 * 119.93890 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5505 1.2360 0.0005 5 6 4.2325 0.0032 0.0016 6 6 5.6332 -0.0523 0.0027 7 6 6.2650 -1.2853 0.0043 8 6 7.7411 -1.3542 0.0050 9 8 8.3071 -2.2596 0.5862 10 7 8.4599 -0.4134 -0.6388 11 6 7.9090 0.7729 -1.3190 12 6 8.9777 1.1581 -2.3723 13 6 10.2927 0.8469 -1.6098 14 1 11.0986 0.6200 -2.3078 15 7 10.6636 1.9648 -0.7385 16 6 11.9823 2.2096 -0.4627 17 1 12.7490 1.5785 -0.8872 18 6 12.3336 3.2685 0.3633 19 7 13.6012 3.5036 0.6288 20 14 11.0075 4.3597 1.0982 21 1 10.5792 3.8050 2.4073 22 1 11.5459 5.7299 1.2933 23 1 9.8432 4.4118 0.1779 24 6 9.9238 -0.3966 -0.7735 25 1 10.2593 -1.2984 -1.2857 26 6 10.5726 -0.3081 0.6093 27 6 5.5099 -2.4717 0.0043 28 6 4.1533 -2.4349 0.0032 29 6 3.4805 -1.1986 0.0016 30 7 2.1451 -1.1455 0.0005 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5137 34 1 1.6312 2.1445 -0.0046 35 1 4.0926 2.1701 0.0010 36 1 6.2145 0.8579 0.0024 37 1 6.9663 0.5263 -1.8076 38 1 7.7670 1.5864 -0.6076 39 1 8.8876 0.5389 -3.2648 40 1 8.9135 2.2165 -2.6248 41 1 9.9749 2.5314 -0.3570 42 1 13.8467 4.2436 1.2057 43 1 10.2303 -1.1398 1.2251 44 1 11.6567 -0.3549 0.5057 45 1 10.2932 0.6333 1.0822 46 1 6.0166 -3.4254 0.0051 47 1 3.5891 -3.3558 0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987234484.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:14 Heat of formation + Delta-G solvation = 47.086624 kcal Electronic energy + Delta-G solvation = -29209.851068 eV Core-core repulsion = 25358.125125 eV Total energy + Delta-G solvation = -3851.725942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.26301 -40.08582 -37.95564 -36.93225 -34.33556 -33.78963 -32.46389 -31.68217 -30.96984 -30.38025 -29.31727 -28.14621 -25.58717 -24.25423 -23.86419 -23.14153 -22.35706 -22.20837 -20.40396 -19.04896 -18.38114 -17.88340 -17.26753 -16.83126 -16.28510 -15.96209 -15.08482 -14.96071 -14.77357 -14.54418 -14.27767 -14.06716 -13.82518 -13.70359 -13.55438 -13.40221 -13.26649 -12.94805 -12.74755 -12.59328 -12.57624 -12.24951 -11.85123 -11.76183 -11.66571 -11.46441 -11.05822 -10.99460 -10.90314 -10.78046 -10.54704 -10.28327 -10.15747 -9.83816 -9.70694 -9.60481 -9.04985 -8.99047 -8.53219 -8.40480 -7.40585 -5.85895 -3.22974 -0.02743 0.42777 1.63527 2.28086 3.04743 3.16672 3.26918 3.31195 3.38173 3.78670 3.83338 4.20448 4.33275 4.37856 4.46921 4.49478 4.71885 4.74799 4.82823 4.98632 5.03803 5.07928 5.14145 5.14874 5.18673 5.28846 5.44624 5.45600 5.54712 5.56003 5.58869 5.65545 5.71767 5.76167 5.91515 5.96443 6.03389 6.07816 6.09503 6.20539 6.28578 6.34961 6.49401 6.49997 6.74597 6.91917 7.21283 7.60596 7.69672 7.87868 8.28017 8.32218 9.08535 9.80736 9.98829 11.31942 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015272 B = 0.003021 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.929005 B = 9264.759715 C =10371.780226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.163 3.837 3 C -0.178 4.178 4 C -0.045 4.045 5 C -0.115 4.115 6 C -0.063 4.063 7 C -0.117 4.117 8 C 0.567 3.433 9 O -0.534 6.534 10 N -0.599 5.599 11 C 0.094 3.906 12 C -0.148 4.148 13 C 0.176 3.824 14 H 0.085 0.915 15 N -0.733 5.733 16 C -0.245 4.245 17 H 0.093 0.907 18 C 0.009 3.991 19 N -0.929 5.929 20 Si 0.880 3.120 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.278 1.278 24 C 0.109 3.891 25 H 0.067 0.933 26 C -0.138 4.138 27 C -0.052 4.052 28 C -0.103 4.103 29 C 0.147 3.853 30 N -0.480 5.480 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.361 0.639 42 H 0.260 0.740 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.140 0.860 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.260 -5.701 -4.927 26.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.010 3.990 3 C -0.198 4.198 4 C -0.071 4.071 5 C -0.117 4.117 6 C -0.083 4.083 7 C -0.120 4.120 8 C 0.355 3.645 9 O -0.412 6.412 10 N -0.332 5.332 11 C -0.029 4.029 12 C -0.187 4.187 13 C 0.064 3.936 14 H 0.103 0.897 15 N -0.373 5.373 16 C -0.374 4.374 17 H 0.111 0.889 18 C -0.187 4.187 19 N -0.576 5.576 20 Si 0.710 3.290 21 H -0.211 1.211 22 H -0.217 1.217 23 H -0.204 1.204 24 C 0.004 3.996 25 H 0.085 0.915 26 C -0.196 4.196 27 C -0.072 4.072 28 C -0.121 4.121 29 C 0.025 3.975 30 N -0.190 5.190 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.194 0.806 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.158 0.842 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -25.061 -7.063 -4.564 26.434 hybrid contribution -0.402 1.800 0.698 1.972 sum -25.463 -5.264 -3.866 26.287 Atomic orbital electron populations 1.20800 0.88545 1.03764 1.03377 1.21557 0.97218 0.88237 0.91959 1.21718 0.94997 0.99323 1.03736 1.21571 0.94555 0.97317 0.93623 1.18762 0.94299 0.94293 1.04384 1.21865 0.92906 0.98131 0.95361 1.20021 0.93649 0.94055 1.04283 1.17847 0.86014 0.81574 0.79045 1.90779 1.71845 1.34866 1.43680 1.48561 1.08533 1.23182 1.52909 1.22582 0.97698 0.87709 0.94941 1.23216 0.95721 1.02533 0.97276 1.21226 0.94472 0.86925 0.90952 0.89667 1.42699 1.05412 1.32212 1.57024 1.19022 0.82361 1.11358 1.24668 0.88938 1.24653 0.95560 0.98615 0.99874 1.69687 1.14646 1.32177 1.41083 0.86634 0.81856 0.80985 0.79493 1.21074 1.21694 1.20424 1.22738 0.77455 1.00348 0.99049 0.91513 1.21825 1.01061 1.01524 0.95174 1.20862 0.93158 0.98037 0.95181 1.20663 0.93602 0.96539 1.01326 1.18945 0.89053 0.92911 0.96589 1.67889 1.08347 1.28758 1.13958 0.90016 0.90225 0.90410 0.84353 0.83966 0.83837 0.90744 0.91464 0.90410 0.89425 0.80573 0.92952 0.93551 0.91254 0.91675 0.84237 0.84198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.14 36.00 0.37 -0.24 16 2 C 0.16 1.49 6.78 -82.49 -0.56 0.93 16 3 C -0.18 -1.40 9.64 -39.78 -0.38 -1.78 16 4 C -0.04 -0.40 9.89 -39.18 -0.39 -0.79 16 5 C -0.12 -1.30 5.74 -106.82 -0.61 -1.91 16 6 C -0.06 -0.74 7.65 -38.74 -0.30 -1.03 16 7 C -0.12 -1.57 5.58 -104.98 -0.59 -2.15 16 8 C 0.57 9.21 7.37 -12.37 -0.09 9.12 16 9 O -0.53 -10.39 15.63 5.31 0.08 -10.31 16 10 N -0.60 -9.24 3.06 -164.14 -0.50 -9.74 16 11 C 0.09 1.18 5.02 -2.53 -0.01 1.16 16 12 C -0.15 -1.93 6.70 -24.58 -0.16 -2.09 16 13 C 0.18 3.00 3.53 -66.09 -0.23 2.77 16 14 H 0.09 1.47 8.06 -51.92 -0.42 1.05 16 15 N -0.73 -15.42 3.45 -51.64 -0.18 -15.60 16 16 C -0.24 -6.31 9.28 -15.06 -0.14 -6.45 16 17 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 18 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 19 N -0.93 -28.01 13.97 55.49 0.78 -27.23 16 20 Si 0.88 20.98 27.74 -169.99 -4.71 16.26 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.08 6.52 56.52 0.37 -5.71 16 24 C 0.11 1.88 3.45 -66.95 -0.23 1.65 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 26 C -0.14 -2.74 8.20 37.16 0.30 -2.44 16 27 C -0.05 -0.63 9.49 -39.59 -0.38 -1.00 16 28 C -0.10 -1.16 9.95 -39.54 -0.39 -1.55 16 29 C 0.15 1.77 6.61 -84.78 -0.56 1.21 16 30 N -0.48 -5.57 10.23 -7.17 -0.07 -5.64 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.29 8.07 -51.93 -0.42 -0.13 16 34 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.14 1.52 5.15 -52.49 -0.27 1.25 16 37 H 0.07 0.78 6.52 -51.92 -0.34 0.44 16 38 H 0.07 0.84 7.19 -51.93 -0.37 0.46 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.36 7.54 5.71 -40.82 -0.23 7.31 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.05 0.94 6.65 -51.93 -0.35 0.59 16 44 H 0.07 1.46 7.82 -51.93 -0.41 1.06 16 45 H 0.06 1.41 7.06 -51.93 -0.37 1.04 16 46 H 0.14 1.58 7.95 -52.49 -0.42 1.16 16 47 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -32.87 376.75 -9.95 -42.82 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.56 Total: 8.21 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -4.45 Total: -4.45 kcal Atomic # 7 Polarization: -58.23 SS G_CDS: 0.02 Total: -58.21 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.71 Total: 16.26 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.87 -9.95 -42.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987234484.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.907 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds