Wall clock time and date at job start Tue Mar 31 2020 22:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39318 * 119.11514 * 2 1 4 4 C 1.36581 * 119.90756 * 179.97438 * 3 2 1 5 5 C 1.40888 * 118.15581 * 359.97438 * 4 3 2 6 6 C 1.40187 * 121.21836 * 180.02562 * 5 4 3 7 7 C 1.38542 * 119.40044 * 179.97438 * 6 5 4 8 8 C 1.47774 * 119.80282 * 179.97438 * 7 6 5 9 9 O 1.21564 * 119.99834 * 146.56776 * 8 7 6 10 10 N 1.34769 * 120.00092 * 326.57068 * 8 7 6 11 11 C 1.47426 * 125.65100 * 3.47750 * 10 8 7 12 12 C 1.54914 * 104.83462 * 204.09175 * 11 10 8 13 13 C 1.55156 * 101.57566 * 322.98800 * 12 11 10 14 14 H 1.09007 * 110.71558 * 153.86881 * 13 12 11 15 15 N 1.46506 * 110.72026 * 276.95729 * 13 12 11 16 16 C 1.36928 * 120.00098 * 209.87168 * 15 13 12 17 17 H 1.07998 * 120.00585 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99873 * 180.02562 * 16 15 13 19 19 N 1.31625 * 120.00061 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00010 * 359.97438 * 18 16 15 21 21 H 1.48491 * 109.47356 * 90.00062 * 20 18 16 22 22 H 1.48499 * 109.47132 * 210.00500 * 20 18 16 23 23 H 1.48503 * 109.46930 * 330.00058 * 20 18 16 24 24 C 1.47018 * 125.64871 * 183.16484 * 10 8 7 25 25 H 1.09002 * 109.88251 * 59.55973 * 24 10 8 26 26 C 1.53004 * 109.88181 * 298.39290 * 24 10 8 27 27 C 1.40632 * 120.39328 * 0.02562 * 7 6 5 28 28 C 1.35705 * 120.92112 * 359.97229 * 27 7 6 29 29 C 1.40754 * 120.11210 * 0.02621 * 28 27 7 30 30 N 1.31125 * 119.12032 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46767 * 90.00674 * 1 2 3 32 32 H 1.08999 * 109.47085 * 210.00226 * 1 2 3 33 33 H 1.08991 * 109.47241 * 330.00577 * 1 2 3 34 34 H 1.08007 * 120.04372 * 359.71768 * 3 2 1 35 35 H 1.07994 * 120.92184 * 180.02562 * 4 3 2 36 36 H 1.08000 * 120.29164 * 359.97438 * 6 5 4 37 37 H 1.09009 * 110.36378 * 322.93002 * 11 10 8 38 38 H 1.08992 * 110.37083 * 85.24619 * 11 10 8 39 39 H 1.09004 * 111.00309 * 81.05938 * 12 11 10 40 40 H 1.08995 * 111.00433 * 204.91313 * 12 11 10 41 41 H 0.97002 * 119.99292 * 29.86653 * 15 13 12 42 42 H 0.96995 * 119.99895 * 179.97438 * 19 18 16 43 43 H 1.08995 * 109.46648 * 56.71666 * 26 24 10 44 44 H 1.09005 * 109.46983 * 176.71331 * 26 24 10 45 45 H 1.08993 * 109.47139 * 296.70930 * 26 24 10 46 46 H 1.08001 * 119.53868 * 179.97438 * 27 7 6 47 47 H 1.08002 * 119.93890 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5505 1.2360 0.0005 5 6 4.2325 0.0032 0.0016 6 6 5.6332 -0.0523 0.0027 7 6 6.2650 -1.2853 0.0043 8 6 7.7411 -1.3542 0.0050 9 8 8.3071 -2.2596 0.5862 10 7 8.4599 -0.4134 -0.6388 11 6 7.9090 0.7729 -1.3190 12 6 8.9777 1.1581 -2.3723 13 6 10.2927 0.8469 -1.6098 14 1 11.0986 0.6200 -2.3078 15 7 10.6636 1.9648 -0.7385 16 6 11.9823 2.2096 -0.4627 17 1 12.7490 1.5785 -0.8872 18 6 12.3336 3.2685 0.3633 19 7 13.6012 3.5036 0.6288 20 14 11.0075 4.3597 1.0982 21 1 10.5792 3.8050 2.4073 22 1 11.5459 5.7299 1.2933 23 1 9.8432 4.4118 0.1779 24 6 9.9238 -0.3966 -0.7735 25 1 10.2593 -1.2984 -1.2857 26 6 10.5726 -0.3081 0.6093 27 6 5.5099 -2.4717 0.0043 28 6 4.1533 -2.4349 0.0032 29 6 3.4805 -1.1986 0.0016 30 7 2.1451 -1.1455 0.0005 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3633 0.8900 0.5137 34 1 1.6312 2.1445 -0.0046 35 1 4.0926 2.1701 0.0010 36 1 6.2145 0.8579 0.0024 37 1 6.9663 0.5263 -1.8076 38 1 7.7670 1.5864 -0.6076 39 1 8.8876 0.5389 -3.2648 40 1 8.9135 2.2165 -2.6248 41 1 9.9749 2.5314 -0.3570 42 1 13.8467 4.2436 1.2057 43 1 10.2303 -1.1398 1.2251 44 1 11.6567 -0.3549 0.5057 45 1 10.2932 0.6333 1.0822 46 1 6.0166 -3.4254 0.0051 47 1 3.5891 -3.3558 0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987234484.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:13 Heat of formation + Delta-G solvation = 26.945284 kcal Electronic energy + Delta-G solvation = -29210.724462 eV Core-core repulsion = 25358.125125 eV Total energy + Delta-G solvation = -3852.599336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.11682 -41.21919 -39.16836 -37.92408 -35.93534 -34.61442 -33.66718 -33.00181 -32.23826 -31.54777 -30.56053 -28.93713 -27.02105 -25.29612 -24.86501 -24.67057 -23.28455 -23.13795 -21.64465 -20.33698 -19.75313 -19.19129 -18.36633 -17.81987 -17.41104 -16.89450 -16.38659 -16.03019 -15.78872 -15.71438 -15.49426 -15.22450 -15.19441 -14.85686 -14.69804 -14.41300 -14.20127 -13.92391 -13.89853 -13.81845 -13.54628 -13.18533 -13.14725 -13.00608 -12.88805 -12.49573 -12.47099 -12.33144 -12.31007 -12.01695 -11.85003 -11.71934 -11.66858 -11.54491 -11.06644 -10.92712 -10.50790 -9.82661 -9.64907 -9.33767 -9.31129 -7.97715 -5.31401 -0.81505 -0.35283 0.85115 1.36835 1.36910 1.42571 1.49265 1.87152 2.11459 2.51264 2.99753 3.13496 3.28835 3.38280 3.48421 3.55435 3.64497 3.66656 3.85905 3.91165 3.97494 4.07411 4.19005 4.27259 4.31976 4.38210 4.46670 4.51112 4.64232 4.66256 4.76291 4.78803 4.81263 4.83892 4.91990 4.95798 5.01023 5.08931 5.18500 5.19089 5.20734 5.22219 5.22704 5.44467 5.47859 5.50375 5.74989 5.82991 6.24934 6.48495 6.89684 7.03961 7.11401 7.84710 8.04058 9.23594 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015272 B = 0.003021 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.929005 B = 9264.759715 C =10371.780226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.159 3.841 3 C -0.172 4.172 4 C -0.047 4.047 5 C -0.130 4.130 6 C -0.049 4.049 7 C -0.138 4.138 8 C 0.565 3.435 9 O -0.578 6.578 10 N -0.599 5.599 11 C 0.091 3.909 12 C -0.132 4.132 13 C 0.168 3.832 14 H 0.081 0.919 15 N -0.732 5.732 16 C -0.214 4.214 17 H 0.060 0.940 18 C -0.064 4.064 19 N -0.985 5.985 20 Si 0.944 3.056 21 H -0.290 1.290 22 H -0.301 1.301 23 H -0.238 1.238 24 C 0.115 3.885 25 H 0.068 0.932 26 C -0.126 4.126 27 C -0.060 4.060 28 C -0.104 4.104 29 C 0.130 3.870 30 N -0.511 5.511 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.175 0.825 35 H 0.171 0.829 36 H 0.158 0.842 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.367 0.633 42 H 0.255 0.745 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.048 0.952 46 H 0.136 0.864 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.825 -3.781 -6.188 30.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.007 3.993 3 C -0.192 4.192 4 C -0.072 4.072 5 C -0.132 4.132 6 C -0.068 4.068 7 C -0.141 4.141 8 C 0.355 3.645 9 O -0.459 6.459 10 N -0.330 5.330 11 C -0.031 4.031 12 C -0.171 4.171 13 C 0.058 3.942 14 H 0.099 0.901 15 N -0.373 5.373 16 C -0.345 4.345 17 H 0.078 0.922 18 C -0.255 4.255 19 N -0.636 5.636 20 Si 0.772 3.228 21 H -0.217 1.217 22 H -0.229 1.229 23 H -0.162 1.162 24 C 0.009 3.991 25 H 0.086 0.914 26 C -0.184 4.184 27 C -0.080 4.080 28 C -0.123 4.123 29 C 0.009 3.991 30 N -0.221 5.221 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.122 0.878 34 H 0.193 0.807 35 H 0.189 0.811 36 H 0.175 0.825 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.200 0.800 42 H 0.064 0.936 43 H 0.055 0.945 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.154 0.846 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -29.704 -5.158 -5.883 30.717 hybrid contribution 0.887 1.120 1.054 1.775 sum -28.817 -4.038 -4.829 29.497 Atomic orbital electron populations 1.20925 0.86267 1.04753 1.04443 1.22265 0.98880 0.88224 0.89948 1.22144 0.94913 1.00213 1.01881 1.21948 0.95184 0.97341 0.92722 1.18937 0.94073 0.95196 1.05003 1.21960 0.93284 0.97687 0.93843 1.19792 0.91642 0.95355 1.07317 1.18318 0.87228 0.80827 0.78091 1.90748 1.72947 1.36648 1.45600 1.48559 1.07503 1.24051 1.52924 1.22835 0.98668 0.86651 0.94945 1.23162 0.92350 1.03943 0.97620 1.21413 0.96846 0.85418 0.90525 0.90132 1.42603 1.03508 1.33381 1.57807 1.18930 0.83868 1.09401 1.22341 0.92247 1.25424 0.97651 1.00968 1.01454 1.69879 1.17287 1.33338 1.43053 0.85566 0.80281 0.78015 0.78893 1.21693 1.22863 1.16171 1.22463 0.79018 1.00528 0.97106 0.91414 1.21660 0.99757 1.00076 0.96925 1.20834 0.93497 0.97753 0.95961 1.20772 0.93253 0.97229 1.01017 1.19177 0.89714 0.93430 0.96796 1.67935 1.08157 1.30342 1.15705 0.88725 0.90863 0.87831 0.80712 0.81118 0.82453 0.87767 0.90560 0.87933 0.88077 0.79958 0.93645 0.94499 0.93537 0.93330 0.84578 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.14 71.24 0.72 -0.11 16 2 C 0.16 2.37 6.78 42.92 0.29 2.66 16 3 C -0.17 -1.91 9.64 22.14 0.21 -1.70 16 4 C -0.05 -0.62 9.89 22.53 0.22 -0.40 16 5 C -0.13 -2.55 5.74 -21.29 -0.12 -2.68 16 6 C -0.05 -1.01 7.65 22.82 0.17 -0.83 16 7 C -0.14 -3.56 5.58 -20.10 -0.11 -3.67 16 8 C 0.56 18.16 7.37 86.77 0.64 18.79 16 9 O -0.58 -23.17 15.63 -3.92 -0.06 -23.23 16 10 N -0.60 -17.56 3.06 -791.49 -2.43 -19.99 16 11 C 0.09 1.93 5.02 86.86 0.44 2.37 16 12 C -0.13 -2.92 6.70 31.99 0.21 -2.70 16 13 C 0.17 5.48 3.53 46.18 0.16 5.64 16 14 H 0.08 2.72 8.06 -2.38 -0.02 2.70 16 15 N -0.73 -29.86 3.45 -317.30 -1.09 -30.95 16 16 C -0.21 -11.22 9.28 84.04 0.78 -10.44 16 17 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 18 C -0.06 -3.58 5.50 84.86 0.47 -3.12 16 19 N -0.98 -61.56 13.97 21.65 0.30 -61.25 16 20 Si 0.94 43.01 27.74 68.60 1.90 44.91 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 23 H -0.24 -9.14 6.52 99.48 0.65 -8.49 16 24 C 0.11 3.90 3.45 45.35 0.16 4.06 16 25 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 26 C -0.13 -5.16 8.20 71.98 0.59 -4.57 16 27 C -0.06 -1.45 9.49 22.27 0.21 -1.24 16 28 C -0.10 -2.30 9.95 22.30 0.22 -2.08 16 29 C 0.13 2.93 6.61 40.35 0.27 3.20 16 30 N -0.51 -10.88 10.23 -176.58 -1.81 -12.68 16 31 H 0.09 0.53 8.14 -2.38 -0.02 0.52 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.10 0.28 8.07 -2.39 -0.02 0.26 16 34 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 35 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 36 H 0.16 2.71 5.15 -2.91 -0.01 2.70 16 37 H 0.10 1.69 6.52 -2.38 -0.02 1.67 16 38 H 0.08 1.54 7.19 -2.39 -0.02 1.53 16 39 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.37 14.27 5.71 -92.71 -0.53 13.74 16 42 H 0.25 15.35 8.31 -92.71 -0.77 14.57 16 43 H 0.04 1.55 6.65 -2.39 -0.02 1.53 16 44 H 0.05 2.06 7.82 -2.38 -0.02 2.04 16 45 H 0.05 2.12 7.06 -2.39 -0.02 2.10 16 46 H 0.14 3.23 7.95 -2.91 -0.02 3.21 16 47 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -76.00 376.75 2.76 -73.24 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.41 Total: 26.76 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.54 Total: 3.20 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -5.02 Total: -124.87 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.06 Total: -23.23 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.90 Total: 44.91 kcal Total: -76.00 2.76 -73.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987234484.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.186 kcal (2) G-P(sol) polarization free energy of solvation -76.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds