Wall clock time and date at job start Tue Mar 31 2020 22:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39310 * 119.11297 * 2 1 4 4 C 1.36582 * 119.89995 * 179.69949 * 3 2 1 5 5 C 1.40888 * 118.15735 * 0.56396 * 4 3 2 6 6 C 1.40189 * 121.21752 * 179.66831 * 5 4 3 7 7 C 1.38551 * 119.39885 * 180.02562 * 6 5 4 8 8 C 1.47764 * 119.80116 * 179.97438 * 7 6 5 9 9 O 1.21569 * 119.99977 * 204.67933 * 8 7 6 10 10 N 1.34777 * 120.00305 * 24.66847 * 8 7 6 11 11 C 1.47424 * 125.64958 * 5.76836 * 10 8 7 12 12 C 1.54900 * 104.83408 * 155.83110 * 11 10 8 13 13 C 1.55154 * 101.58328 * 37.01002 * 12 11 10 14 14 H 1.09001 * 110.71994 * 82.85863 * 13 12 11 15 15 N 1.46498 * 110.72489 * 206.13436 * 13 12 11 16 16 C 1.36934 * 120.00132 * 273.54828 * 15 13 12 17 17 H 1.08009 * 120.00105 * 359.97438 * 16 15 13 18 18 C 1.38813 * 120.00185 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00056 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 119.99863 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47073 * 90.00140 * 20 18 16 22 22 H 1.48501 * 109.46905 * 209.99593 * 20 18 16 23 23 H 1.48498 * 109.47343 * 329.99988 * 20 18 16 24 24 C 1.47025 * 125.64852 * 185.45824 * 10 8 7 25 25 H 1.09004 * 109.87955 * 300.51610 * 24 10 8 26 26 C 1.52996 * 109.88504 * 61.67835 * 24 10 8 27 27 C 1.40628 * 120.39123 * 359.97438 * 7 6 5 28 28 C 1.35703 * 120.92349 * 359.97438 * 27 7 6 29 29 C 1.40757 * 120.11182 * 0.03792 * 28 27 7 30 30 N 1.31116 * 119.11142 * 180.25698 * 2 1 3 31 31 H 1.08998 * 109.47657 * 269.74225 * 1 2 3 32 32 H 1.09003 * 109.47239 * 149.73898 * 1 2 3 33 33 H 1.09002 * 109.46704 * 29.74356 * 1 2 3 34 34 H 1.08002 * 120.05080 * 359.96988 * 3 2 1 35 35 H 1.07999 * 120.92227 * 180.24400 * 4 3 2 36 36 H 1.07997 * 120.29713 * 0.02562 * 6 5 4 37 37 H 1.09005 * 110.36603 * 274.67254 * 11 10 8 38 38 H 1.09009 * 110.36416 * 36.99361 * 11 10 8 39 39 H 1.09000 * 111.00655 * 155.08531 * 12 11 10 40 40 H 1.09003 * 111.00848 * 278.93458 * 12 11 10 41 41 H 0.97003 * 120.00346 * 93.54613 * 15 13 12 42 42 H 0.97000 * 119.99826 * 179.97438 * 19 18 16 43 43 H 1.09008 * 109.46962 * 58.54462 * 26 24 10 44 44 H 1.08994 * 109.47366 * 178.54515 * 26 24 10 45 45 H 1.08999 * 109.47336 * 298.55325 * 26 24 10 46 46 H 1.08003 * 119.53669 * 179.97438 * 27 7 6 47 47 H 1.08002 * 119.94277 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2171 0.0000 4 6 3.5505 1.2359 0.0062 5 6 4.2324 0.0030 0.0003 6 6 5.6331 -0.0525 -0.0009 7 6 6.2649 -1.2856 -0.0073 8 6 7.7409 -1.3545 -0.0091 9 8 8.3031 -2.3364 -0.4539 10 7 8.4641 -0.3288 0.4821 11 6 7.9174 0.8624 1.1571 12 6 9.0764 1.3833 2.0429 13 6 10.3073 1.1066 1.1398 14 1 10.4403 1.9079 0.4129 15 7 11.5159 0.9335 1.9494 16 6 12.2532 2.0259 2.3213 17 1 11.9439 3.0151 2.0173 18 6 13.3981 1.8620 3.0889 19 7 13.7747 0.6566 3.4598 20 14 14.4042 3.3522 3.5956 21 1 13.9059 3.8669 4.8963 22 1 15.8310 2.9633 3.7310 23 1 14.2756 4.4109 2.5622 24 6 9.9294 -0.2155 0.4394 25 1 10.3817 -1.0574 0.9637 26 6 10.4069 -0.1865 -1.0138 27 6 5.5097 -2.4719 -0.0122 28 6 4.1532 -2.4350 -0.0101 29 6 3.4804 -1.1987 -0.0039 30 7 2.1449 -1.1455 -0.0051 31 1 -0.3634 -0.0046 1.0276 32 1 -0.3634 -0.8876 -0.5179 33 1 -0.3633 0.8923 -0.5099 34 1 1.6312 2.1444 -0.0005 35 1 4.0927 2.1699 0.0103 36 1 6.2145 0.8576 0.0033 37 1 7.6320 1.6165 0.4235 38 1 7.0614 0.5893 1.7743 39 1 8.9685 2.4498 2.2402 40 1 9.1404 0.8199 2.9739 41 1 11.7940 0.0451 2.2222 42 1 14.5750 0.5421 3.9959 43 1 9.9448 0.6543 -1.5314 44 1 11.4910 -0.0764 -1.0379 45 1 10.1250 -1.1164 -1.5076 46 1 6.0164 -3.4257 -0.0176 47 1 3.5889 -3.3559 -0.0135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987234485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:18 Heat of formation + Delta-G solvation = 41.026500 kcal Electronic energy + Delta-G solvation = -28644.597900 eV Core-core repulsion = 24792.609171 eV Total energy + Delta-G solvation = -3851.988729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27833 -40.08254 -37.84481 -36.92597 -34.33268 -33.80506 -32.53052 -31.68100 -31.03334 -30.25324 -29.19272 -28.15057 -25.38084 -24.29166 -23.92617 -23.27578 -22.30202 -22.16470 -20.39088 -19.40073 -18.37927 -17.43171 -17.26298 -16.82725 -16.23399 -15.92394 -15.13761 -15.04120 -14.80173 -14.56158 -14.30997 -14.02612 -13.74347 -13.54378 -13.46209 -13.38867 -13.27459 -13.01133 -12.77792 -12.59835 -12.39758 -12.22242 -11.99096 -11.75619 -11.51690 -11.47789 -11.19630 -11.07158 -10.90847 -10.84815 -10.62510 -10.30840 -10.08208 -9.89563 -9.77168 -9.69538 -9.00520 -8.98371 -8.56610 -8.45054 -7.07544 -5.85131 -3.15973 -0.04784 0.41788 1.62065 2.25037 2.98768 3.16810 3.38260 3.43586 3.45590 3.79590 3.82830 4.18500 4.32447 4.36637 4.45419 4.51153 4.72293 4.76129 4.93375 4.98975 5.04244 5.13250 5.16478 5.18655 5.24726 5.38320 5.44507 5.48208 5.54352 5.56877 5.59921 5.67654 5.73140 5.75968 5.86333 5.95891 6.01795 6.07328 6.09305 6.19736 6.23556 6.38864 6.48300 6.51712 6.55480 6.67218 6.86564 7.60078 7.61494 7.64050 8.22102 8.31975 9.43506 9.97526 10.32156 11.36906 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019774 B = 0.002369 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.686909 B =11815.614275 C =12749.406333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.164 3.836 3 C -0.179 4.179 4 C -0.044 4.044 5 C -0.117 4.117 6 C -0.065 4.065 7 C -0.120 4.120 8 C 0.569 3.431 9 O -0.535 6.535 10 N -0.602 5.602 11 C 0.092 3.908 12 C -0.157 4.157 13 C 0.177 3.823 14 H 0.066 0.934 15 N -0.714 5.714 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.929 5.929 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.127 3.873 25 H 0.081 0.919 26 C -0.154 4.154 27 C -0.050 4.050 28 C -0.104 4.104 29 C 0.148 3.852 30 N -0.480 5.480 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.139 0.861 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.060 0.940 46 H 0.141 0.859 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.728 1.005 -7.891 26.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.011 3.989 3 C -0.198 4.198 4 C -0.070 4.070 5 C -0.119 4.119 6 C -0.084 4.084 7 C -0.123 4.123 8 C 0.358 3.642 9 O -0.413 6.413 10 N -0.335 5.335 11 C -0.031 4.031 12 C -0.198 4.198 13 C 0.065 3.935 14 H 0.084 0.916 15 N -0.355 5.355 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.207 4.207 19 N -0.576 5.576 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.024 3.976 25 H 0.099 0.901 26 C -0.212 4.212 27 C -0.071 4.071 28 C -0.123 4.123 29 C 0.026 3.974 30 N -0.190 5.190 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.221 0.779 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.079 0.921 46 H 0.159 0.841 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -25.701 -0.276 -8.134 26.959 hybrid contribution 1.109 1.389 0.532 1.856 sum -24.592 1.113 -7.602 25.764 Atomic orbital electron populations 1.20806 0.88551 1.03743 1.03419 1.21560 0.97229 0.88247 0.91869 1.21715 0.95017 0.99309 1.03796 1.21559 0.94534 0.97276 0.93627 1.18773 0.94355 0.94284 1.04519 1.22070 0.92963 0.98417 0.94920 1.19985 0.93420 0.94099 1.04758 1.17842 0.86100 0.81927 0.78362 1.90779 1.72187 1.30997 1.47340 1.48462 1.08110 1.20009 1.56930 1.22689 0.98230 0.86860 0.95302 1.23624 0.95343 1.01432 0.99441 1.21245 0.87329 0.92932 0.91969 0.91624 1.42349 1.25009 1.07589 1.60545 1.19182 1.03980 0.87457 1.26925 0.90991 1.24778 0.98567 0.96574 1.00734 1.69663 1.26363 1.20060 1.41536 0.86179 0.79608 0.81862 0.78423 1.21659 1.21733 1.20689 1.21949 0.78204 1.00299 0.97183 0.90135 1.22045 1.02086 1.01712 0.95395 1.20902 0.93151 0.98226 0.94798 1.20672 0.93614 0.96560 1.01413 1.18967 0.89053 0.92956 0.96386 1.67896 1.08372 1.28765 1.13960 0.89989 0.90224 0.90414 0.84350 0.83945 0.83335 0.91445 0.90855 0.90404 0.90449 0.77924 0.93332 0.93024 0.90886 0.92125 0.84079 0.84184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.58 10.14 36.01 0.37 -0.22 16 2 C 0.16 1.43 6.78 -82.50 -0.56 0.87 16 3 C -0.18 -1.31 9.64 -39.78 -0.38 -1.69 16 4 C -0.04 -0.36 9.89 -39.18 -0.39 -0.75 16 5 C -0.12 -1.25 5.74 -106.82 -0.61 -1.86 16 6 C -0.06 -0.70 7.82 -38.73 -0.30 -1.01 16 7 C -0.12 -1.56 5.67 -104.99 -0.60 -2.15 16 8 C 0.57 9.01 7.38 -12.37 -0.09 8.92 16 9 O -0.53 -10.14 15.83 5.30 0.08 -10.06 16 10 N -0.60 -9.15 3.06 -164.15 -0.50 -9.65 16 11 C 0.09 1.15 4.98 -2.53 -0.01 1.14 16 12 C -0.16 -2.45 6.76 -24.59 -0.17 -2.62 16 13 C 0.18 3.26 3.11 -66.10 -0.21 3.06 16 14 H 0.07 1.20 7.84 -51.93 -0.41 0.79 16 15 N -0.71 -16.94 5.25 -51.66 -0.27 -17.21 16 16 C -0.24 -6.42 9.98 -15.06 -0.15 -6.57 16 17 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 20 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.13 2.20 3.18 -66.96 -0.21 1.98 16 25 H 0.08 1.59 7.68 -51.93 -0.40 1.19 16 26 C -0.15 -2.51 9.10 37.16 0.34 -2.17 16 27 C -0.05 -0.61 9.48 -39.59 -0.38 -0.98 16 28 C -0.10 -1.16 9.95 -39.54 -0.39 -1.56 16 29 C 0.15 1.75 6.61 -84.78 -0.56 1.18 16 30 N -0.48 -5.46 10.23 -7.17 -0.07 -5.53 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.26 8.07 -51.93 -0.42 -0.16 16 34 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.15 1.37 4.57 -52.49 -0.24 1.13 16 37 H 0.07 0.68 6.82 -51.93 -0.35 0.33 16 38 H 0.07 0.82 6.83 -51.92 -0.35 0.47 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.39 9.96 7.50 -40.82 -0.31 9.65 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.05 0.76 8.14 -51.92 -0.42 0.33 16 44 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.02 7.07 -51.93 -0.37 0.66 16 46 H 0.14 1.63 7.81 -52.48 -0.41 1.22 16 47 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 383.38 15.07 5.78 5.78 Total: -1.00 -32.51 383.38 -10.30 -42.80 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -6.61 Total: 8.63 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -4.40 Total: -4.79 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.12 Total: -58.99 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.51 -10.30 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987234485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.830 kcal (2) G-P(sol) polarization free energy of solvation -32.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds