Wall clock time and date at job start Tue Mar 31 2020 22:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39317 * 119.05633 * 2 1 4 4 C 1.38863 * 119.57577 * 180.29417 * 3 2 1 5 5 C 1.47901 * 121.10833 * 179.69020 * 4 3 2 6 6 O 1.21549 * 119.99652 * 141.42047 * 5 4 3 7 7 N 1.34776 * 120.00450 * 321.42450 * 5 4 3 8 8 C 1.47426 * 125.64632 * 354.69108 * 7 5 4 9 9 C 1.54906 * 104.83034 * 204.14831 * 8 7 5 10 10 C 1.55154 * 101.58769 * 322.99739 * 9 8 7 11 11 H 1.08998 * 110.72378 * 153.86340 * 10 9 8 12 12 N 1.46505 * 110.71788 * 276.95828 * 10 9 8 13 13 C 1.36934 * 120.00156 * 273.54642 * 12 10 9 14 14 H 1.08001 * 119.99913 * 0.02562 * 13 12 10 15 15 C 1.38806 * 120.00014 * 179.97438 * 13 12 10 16 16 N 1.31619 * 120.00144 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00249 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46708 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47398 * 119.99848 * 17 15 13 20 20 H 1.48501 * 109.46992 * 240.00412 * 17 15 13 21 21 C 1.47017 * 125.64865 * 174.72197 * 7 5 4 22 22 H 1.09003 * 109.88788 * 59.50061 * 21 7 5 23 23 C 1.52997 * 110.01277 * 298.40704 * 21 7 5 24 24 C 1.41825 * 117.77511 * 359.42725 * 4 3 2 25 25 C 1.40091 * 121.36566 * 180.24715 * 24 4 3 26 26 C 1.36249 * 119.64371 * 179.97438 * 25 24 4 27 27 C 1.39349 * 120.83130 * 0.04323 * 26 25 24 28 28 C 1.36054 * 121.05184 * 359.97438 * 27 26 25 29 29 C 1.40711 * 119.74282 * 0.02562 * 28 27 26 30 30 N 1.30964 * 119.06136 * 179.67790 * 2 1 3 31 31 H 1.08996 * 109.46970 * 270.31185 * 1 2 3 32 32 H 1.09001 * 109.46930 * 30.31498 * 1 2 3 33 33 H 1.09001 * 109.46813 * 150.31884 * 1 2 3 34 34 H 1.07995 * 120.21314 * 359.97438 * 3 2 1 35 35 H 1.09001 * 110.36012 * 85.31605 * 8 7 5 36 36 H 1.08990 * 110.37034 * 322.99311 * 8 7 5 37 37 H 1.09000 * 111.00877 * 204.91594 * 9 8 7 38 38 H 1.09006 * 111.00319 * 81.07518 * 9 8 7 39 39 H 0.96998 * 119.99439 * 93.54300 * 12 10 9 40 40 H 0.97004 * 120.00231 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.47218 * 302.11304 * 23 21 7 42 42 H 1.09007 * 109.47135 * 62.11727 * 23 21 7 43 43 H 1.09005 * 109.47481 * 182.11557 * 23 21 7 44 44 H 1.08007 * 120.18120 * 0.02562 * 25 24 4 45 45 H 1.08001 * 119.58267 * 179.97438 * 26 25 24 46 46 H 1.08007 * 119.47247 * 179.97438 * 27 26 25 47 47 H 1.07998 * 120.12800 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1837 1.2178 0.0000 4 6 3.5722 1.2304 -0.0062 5 6 4.3248 2.5036 -0.0133 6 8 5.3454 2.6099 0.6384 7 7 3.8791 3.5460 -0.7421 8 6 2.7253 3.5220 -1.6595 9 6 2.9952 4.6681 -2.6661 10 6 3.6426 5.7407 -1.7509 11 1 4.2940 6.3974 -2.3274 12 7 2.6137 6.5164 -1.0536 13 6 2.0595 7.6149 -1.6546 14 1 2.3806 7.9092 -2.6429 15 6 1.0844 8.3495 -0.9942 16 7 0.6928 7.9905 0.2100 17 14 0.3288 9.8484 -1.8138 18 1 0.9379 10.0390 -3.1547 19 1 -1.1354 9.6481 -1.9586 20 1 0.5840 11.0501 -0.9795 21 6 4.4633 4.8950 -0.7544 22 1 5.5029 4.8460 -1.0784 23 6 4.3826 5.5134 0.6427 24 6 4.2445 -0.0183 0.0002 25 6 5.6434 -0.0933 -0.0002 26 6 6.2530 -1.3119 0.0066 27 6 5.5023 -2.4859 0.0131 28 6 4.1423 -2.4493 0.0133 29 6 3.4773 -1.2092 0.0064 30 7 2.1432 -1.1447 0.0064 31 1 -0.3633 0.0056 1.0276 32 1 -0.3633 0.8872 -0.5187 33 1 -0.3633 -0.8929 -0.5089 34 1 1.6318 2.1461 -0.0004 35 1 1.8014 3.7080 -1.1118 36 1 2.6733 2.5653 -2.1788 37 1 2.0647 5.0345 -3.0998 38 1 3.6881 4.3491 -3.4447 39 1 2.3252 6.2517 -0.1661 40 1 0.0110 8.5036 0.6714 41 1 3.3425 5.5429 0.9674 42 1 4.9643 4.9112 1.3407 43 1 4.7835 6.5267 0.6154 44 1 6.2356 0.8099 -0.0051 45 1 7.3315 -1.3686 0.0058 46 1 6.0083 -3.4401 0.0180 47 1 3.5752 -3.3684 0.0188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987457682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:28 Heat of formation + Delta-G solvation = 43.167332 kcal Electronic energy + Delta-G solvation = -29573.405347 eV Core-core repulsion = 25721.509451 eV Total energy + Delta-G solvation = -3851.895895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.28553 -39.79606 -37.63256 -37.45924 -34.19291 -33.55961 -32.16087 -31.67934 -30.91917 -30.19111 -28.83271 -27.92026 -25.42805 -24.77257 -23.77582 -23.26050 -22.65450 -21.91963 -19.83426 -18.77076 -18.26078 -17.59713 -17.43767 -16.89298 -16.30957 -15.62985 -15.06824 -14.89181 -14.80298 -14.54857 -14.21711 -13.97463 -13.87192 -13.54135 -13.33249 -13.28065 -13.17653 -12.82592 -12.67077 -12.40618 -12.29086 -11.89083 -11.72234 -11.53644 -11.49782 -11.36527 -11.07786 -11.02501 -10.85534 -10.72689 -10.61352 -10.31236 -10.18679 -10.04311 -9.69300 -9.41096 -9.02991 -8.83507 -8.49989 -8.35532 -7.09867 -5.88264 -3.18174 0.03686 0.63537 1.62000 2.63367 2.89202 3.03436 3.36294 3.42715 3.44692 3.93530 3.96779 4.26670 4.48988 4.49188 4.56154 4.67923 4.91954 4.93439 4.99283 5.12525 5.15116 5.26040 5.32961 5.37450 5.44682 5.48737 5.53349 5.60051 5.64833 5.67736 5.72595 5.77848 5.88943 5.89526 5.95539 6.00180 6.16950 6.23957 6.30910 6.33767 6.37147 6.42161 6.51856 6.63181 6.67858 6.75617 6.90640 7.61262 7.62510 7.73785 8.15487 8.29943 9.41936 9.95951 10.31101 11.33897 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.002991 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.565549 B = 9359.634986 C =10296.640511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.159 3.841 3 C -0.137 4.137 4 C -0.055 4.055 5 C 0.572 3.428 6 O -0.532 6.532 7 N -0.596 5.596 8 C 0.101 3.899 9 C -0.159 4.159 10 C 0.172 3.828 11 H 0.069 0.931 12 N -0.715 5.715 13 C -0.244 4.244 14 H 0.072 0.928 15 C -0.009 4.009 16 N -0.930 5.930 17 Si 0.907 3.093 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.291 1.291 21 C 0.128 3.872 22 H 0.075 0.925 23 C -0.151 4.151 24 C -0.074 4.074 25 C -0.086 4.086 26 C -0.122 4.122 27 C -0.098 4.098 28 C -0.099 4.099 29 C 0.131 3.869 30 N -0.467 5.467 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.149 0.851 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.090 0.910 38 H 0.062 0.938 39 H 0.388 0.612 40 H 0.256 0.744 41 H 0.067 0.933 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.145 0.855 45 H 0.128 0.872 46 H 0.129 0.871 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.527 -19.028 -2.378 19.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.006 3.994 3 C -0.157 4.157 4 C -0.066 4.066 5 C 0.360 3.640 6 O -0.410 6.410 7 N -0.329 5.329 8 C -0.021 4.021 9 C -0.200 4.200 10 C 0.060 3.940 11 H 0.087 0.913 12 N -0.358 5.358 13 C -0.375 4.375 14 H 0.090 0.910 15 C -0.206 4.206 16 N -0.577 5.577 17 Si 0.738 3.262 18 H -0.205 1.205 19 H -0.219 1.219 20 H -0.219 1.219 21 C 0.025 3.975 22 H 0.093 0.907 23 C -0.209 4.209 24 C -0.077 4.077 25 C -0.104 4.104 26 C -0.140 4.140 27 C -0.118 4.118 28 C -0.118 4.118 29 C 0.010 3.990 30 N -0.177 5.177 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.167 0.833 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.225 0.775 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.163 0.837 45 H 0.146 0.854 46 H 0.147 0.853 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.653 -19.675 -2.075 20.576 hybrid contribution -0.239 1.524 -0.082 1.545 sum 5.413 -18.151 -2.157 19.064 Atomic orbital electron populations 1.20822 0.87970 1.04047 1.03655 1.21446 0.97358 0.87541 0.93014 1.22474 0.93554 1.00293 0.99410 1.20387 0.93914 0.93234 0.99111 1.17640 0.84357 0.82243 0.79783 1.90742 1.24097 1.82861 1.43299 1.48568 1.31359 1.10429 1.42511 1.22485 0.88868 0.99455 0.91296 1.23530 1.02797 0.96552 0.97169 1.21193 0.90717 0.90948 0.91100 0.91286 1.42591 1.43606 1.30421 1.19138 1.19257 1.15783 1.02703 0.99727 0.90957 1.24743 0.99711 0.99517 0.96586 1.69664 1.33725 1.41383 1.12965 0.86129 0.78858 0.82793 0.78430 1.20516 1.21863 1.21854 1.22026 0.97332 0.80305 0.97871 0.90747 1.21941 1.02884 1.00780 0.95324 1.18610 0.94981 0.92180 1.01890 1.21370 0.93044 0.99445 0.96572 1.20991 1.00450 0.92152 1.00419 1.20932 0.93715 0.98727 0.98447 1.20754 0.94185 0.96031 1.00797 1.18796 0.88855 0.92774 0.98615 1.67634 1.08663 1.28863 1.12571 0.89863 0.89947 0.90129 0.83305 0.90663 0.91595 0.89105 0.91961 0.77484 0.93428 0.91450 0.92769 0.91075 0.83732 0.85423 0.85285 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.14 36.01 0.37 -0.60 16 2 C 0.16 1.96 6.78 -82.56 -0.56 1.40 16 3 C -0.14 -1.79 7.95 -38.95 -0.31 -2.10 16 4 C -0.06 -0.82 5.40 -104.34 -0.56 -1.39 16 5 C 0.57 9.41 6.95 -12.30 -0.09 9.32 16 6 O -0.53 -9.88 14.01 5.32 0.07 -9.81 16 7 N -0.60 -9.42 3.07 -164.11 -0.50 -9.92 16 8 C 0.10 1.46 5.27 -2.53 -0.01 1.45 16 9 C -0.16 -2.45 6.77 -24.59 -0.17 -2.61 16 10 C 0.17 3.10 3.45 -66.09 -0.23 2.87 16 11 H 0.07 1.24 8.12 -51.93 -0.42 0.81 16 12 N -0.71 -16.10 4.67 -51.65 -0.24 -16.34 16 13 C -0.24 -6.20 9.98 -15.06 -0.15 -6.35 16 14 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 15 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 16 N -0.93 -26.45 13.06 55.49 0.72 -25.73 16 17 Si 0.91 21.25 29.55 -169.99 -5.02 16.23 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 C 0.13 2.14 3.40 -66.96 -0.23 1.92 16 22 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 23 C -0.15 -2.73 8.48 37.16 0.31 -2.42 16 24 C -0.07 -1.07 5.76 -106.52 -0.61 -1.68 16 25 C -0.09 -1.14 9.17 -39.60 -0.36 -1.50 16 26 C -0.12 -1.28 9.96 -39.88 -0.40 -1.67 16 27 C -0.10 -0.92 9.94 -39.95 -0.40 -1.32 16 28 C -0.10 -1.09 9.98 -39.43 -0.39 -1.48 16 29 C 0.13 1.79 6.61 -84.87 -0.56 1.23 16 30 N -0.47 -6.33 10.19 -7.25 -0.07 -6.40 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.15 1.82 6.08 -52.49 -0.32 1.51 16 35 H 0.08 1.14 7.04 -51.93 -0.37 0.77 16 36 H 0.07 0.84 7.35 -51.93 -0.38 0.46 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.39 9.40 5.49 -40.82 -0.22 9.18 16 40 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 41 H 0.07 1.35 6.20 -51.93 -0.32 1.02 16 42 H 0.05 0.98 7.09 -51.93 -0.37 0.61 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.15 2.07 5.91 -52.48 -0.31 1.76 16 45 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 47 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -30.40 377.86 -10.28 -40.67 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -6.48 Total: 10.90 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: -4.45 Total: -5.29 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.09 Total: -58.40 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -30.40 -10.28 -40.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987457682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.839 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds