Wall clock time and date at job start Tue Mar 31 2020 22:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39317 * 119.05633 * 2 1 4 4 C 1.38863 * 119.57577 * 180.29417 * 3 2 1 5 5 C 1.47901 * 121.10833 * 179.69020 * 4 3 2 6 6 O 1.21549 * 119.99652 * 141.42047 * 5 4 3 7 7 N 1.34776 * 120.00450 * 321.42450 * 5 4 3 8 8 C 1.47426 * 125.64632 * 354.69108 * 7 5 4 9 9 C 1.54906 * 104.83034 * 204.14831 * 8 7 5 10 10 C 1.55154 * 101.58769 * 322.99739 * 9 8 7 11 11 H 1.08998 * 110.72378 * 153.86340 * 10 9 8 12 12 N 1.46505 * 110.71788 * 276.95828 * 10 9 8 13 13 C 1.36934 * 120.00156 * 273.54642 * 12 10 9 14 14 H 1.08001 * 119.99913 * 0.02562 * 13 12 10 15 15 C 1.38806 * 120.00014 * 179.97438 * 13 12 10 16 16 N 1.31619 * 120.00144 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00249 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46708 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47398 * 119.99848 * 17 15 13 20 20 H 1.48501 * 109.46992 * 240.00412 * 17 15 13 21 21 C 1.47017 * 125.64865 * 174.72197 * 7 5 4 22 22 H 1.09003 * 109.88788 * 59.50061 * 21 7 5 23 23 C 1.52997 * 110.01277 * 298.40704 * 21 7 5 24 24 C 1.41825 * 117.77511 * 359.42725 * 4 3 2 25 25 C 1.40091 * 121.36566 * 180.24715 * 24 4 3 26 26 C 1.36249 * 119.64371 * 179.97438 * 25 24 4 27 27 C 1.39349 * 120.83130 * 0.04323 * 26 25 24 28 28 C 1.36054 * 121.05184 * 359.97438 * 27 26 25 29 29 C 1.40711 * 119.74282 * 0.02562 * 28 27 26 30 30 N 1.30964 * 119.06136 * 179.67790 * 2 1 3 31 31 H 1.08996 * 109.46970 * 270.31185 * 1 2 3 32 32 H 1.09001 * 109.46930 * 30.31498 * 1 2 3 33 33 H 1.09001 * 109.46813 * 150.31884 * 1 2 3 34 34 H 1.07995 * 120.21314 * 359.97438 * 3 2 1 35 35 H 1.09001 * 110.36012 * 85.31605 * 8 7 5 36 36 H 1.08990 * 110.37034 * 322.99311 * 8 7 5 37 37 H 1.09000 * 111.00877 * 204.91594 * 9 8 7 38 38 H 1.09006 * 111.00319 * 81.07518 * 9 8 7 39 39 H 0.96998 * 119.99439 * 93.54300 * 12 10 9 40 40 H 0.97004 * 120.00231 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.47218 * 302.11304 * 23 21 7 42 42 H 1.09007 * 109.47135 * 62.11727 * 23 21 7 43 43 H 1.09005 * 109.47481 * 182.11557 * 23 21 7 44 44 H 1.08007 * 120.18120 * 0.02562 * 25 24 4 45 45 H 1.08001 * 119.58267 * 179.97438 * 26 25 24 46 46 H 1.08007 * 119.47247 * 179.97438 * 27 26 25 47 47 H 1.07998 * 120.12800 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1837 1.2178 0.0000 4 6 3.5722 1.2304 -0.0062 5 6 4.3248 2.5036 -0.0133 6 8 5.3454 2.6099 0.6384 7 7 3.8791 3.5460 -0.7421 8 6 2.7253 3.5220 -1.6595 9 6 2.9952 4.6681 -2.6661 10 6 3.6426 5.7407 -1.7509 11 1 4.2940 6.3974 -2.3274 12 7 2.6137 6.5164 -1.0536 13 6 2.0595 7.6149 -1.6546 14 1 2.3806 7.9092 -2.6429 15 6 1.0844 8.3495 -0.9942 16 7 0.6928 7.9905 0.2100 17 14 0.3288 9.8484 -1.8138 18 1 0.9379 10.0390 -3.1547 19 1 -1.1354 9.6481 -1.9586 20 1 0.5840 11.0501 -0.9795 21 6 4.4633 4.8950 -0.7544 22 1 5.5029 4.8460 -1.0784 23 6 4.3826 5.5134 0.6427 24 6 4.2445 -0.0183 0.0002 25 6 5.6434 -0.0933 -0.0002 26 6 6.2530 -1.3119 0.0066 27 6 5.5023 -2.4859 0.0131 28 6 4.1423 -2.4493 0.0133 29 6 3.4773 -1.2092 0.0064 30 7 2.1432 -1.1447 0.0064 31 1 -0.3633 0.0056 1.0276 32 1 -0.3633 0.8872 -0.5187 33 1 -0.3633 -0.8929 -0.5089 34 1 1.6318 2.1461 -0.0004 35 1 1.8014 3.7080 -1.1118 36 1 2.6733 2.5653 -2.1788 37 1 2.0647 5.0345 -3.0998 38 1 3.6881 4.3491 -3.4447 39 1 2.3252 6.2517 -0.1661 40 1 0.0110 8.5036 0.6714 41 1 3.3425 5.5429 0.9674 42 1 4.9643 4.9112 1.3407 43 1 4.7835 6.5267 0.6154 44 1 6.2356 0.8099 -0.0051 45 1 7.3315 -1.3686 0.0058 46 1 6.0083 -3.4401 0.0180 47 1 3.5752 -3.3684 0.0188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987457682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:27 Heat of formation + Delta-G solvation = 26.332761 kcal Electronic energy + Delta-G solvation = -29574.135349 eV Core-core repulsion = 25721.509451 eV Total energy + Delta-G solvation = -3852.625897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.32327 -41.03114 -38.97319 -38.37904 -35.82864 -34.72008 -33.28240 -33.00900 -32.30246 -31.28924 -30.35128 -28.75237 -26.89142 -25.95383 -25.49359 -24.35292 -23.54404 -23.12308 -21.18421 -20.04196 -19.41481 -19.13627 -18.48443 -18.13504 -17.65419 -16.73365 -16.39288 -16.11664 -15.86594 -15.72985 -15.64241 -15.43554 -14.93983 -14.82932 -14.57640 -14.36000 -14.15869 -14.07746 -13.94269 -13.68495 -13.33732 -13.08992 -12.99611 -12.89161 -12.63989 -12.52917 -12.47474 -12.39005 -12.32845 -12.23073 -12.00084 -11.79382 -11.56199 -11.45750 -11.38333 -10.92948 -10.51295 -9.79754 -9.73988 -9.29667 -8.98983 -7.90888 -5.18981 -0.94861 -0.28937 0.63965 1.50538 1.52355 1.55707 1.60799 1.72620 1.92208 2.58677 2.98996 3.08677 3.15289 3.41107 3.53731 3.60215 3.68184 3.78458 3.82188 3.90254 4.09119 4.13974 4.20440 4.22950 4.32246 4.34127 4.37531 4.44933 4.53130 4.61988 4.70200 4.77801 4.78073 4.83897 4.88396 4.98714 5.01488 5.04158 5.15842 5.16309 5.27464 5.30492 5.34305 5.39561 5.45951 5.48575 5.59204 5.84017 6.30565 6.34356 6.77439 6.87064 7.38642 8.10848 8.35113 9.32373 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.002991 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.565549 B = 9359.634986 C =10296.640511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.152 3.848 3 C -0.133 4.133 4 C -0.076 4.076 5 C 0.572 3.428 6 O -0.559 6.559 7 N -0.595 5.595 8 C 0.106 3.894 9 C -0.147 4.147 10 C 0.166 3.834 11 H 0.075 0.925 12 N -0.725 5.725 13 C -0.231 4.231 14 H 0.081 0.919 15 C -0.071 4.071 16 N -0.968 5.968 17 Si 0.966 3.034 18 H -0.265 1.265 19 H -0.297 1.297 20 H -0.301 1.301 21 C 0.133 3.867 22 H 0.086 0.914 23 C -0.139 4.139 24 C -0.091 4.091 25 C -0.116 4.116 26 C -0.108 4.108 27 C -0.087 4.087 28 C -0.104 4.104 29 C 0.111 3.889 30 N -0.475 5.475 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.153 0.847 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.378 0.622 40 H 0.249 0.751 41 H 0.044 0.956 42 H 0.050 0.950 43 H 0.064 0.936 44 H 0.127 0.873 45 H 0.156 0.844 46 H 0.170 0.830 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.083 -21.245 -3.923 22.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.001 4.001 3 C -0.154 4.154 4 C -0.087 4.087 5 C 0.361 3.639 6 O -0.440 6.440 7 N -0.327 5.327 8 C -0.015 4.015 9 C -0.187 4.187 10 C 0.056 3.944 11 H 0.093 0.907 12 N -0.366 5.366 13 C -0.363 4.363 14 H 0.099 0.901 15 C -0.264 4.264 16 N -0.618 5.618 17 Si 0.797 3.203 18 H -0.189 1.189 19 H -0.224 1.224 20 H -0.229 1.229 21 C 0.030 3.970 22 H 0.104 0.896 23 C -0.197 4.197 24 C -0.094 4.094 25 C -0.134 4.134 26 C -0.126 4.126 27 C -0.107 4.107 28 C -0.123 4.123 29 C -0.011 4.011 30 N -0.185 5.185 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.171 0.829 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.213 0.787 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.145 0.855 45 H 0.173 0.827 46 H 0.188 0.812 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 6.235 -21.916 -3.676 23.081 hybrid contribution -0.279 2.086 0.394 2.141 sum 5.956 -19.831 -3.282 20.964 Atomic orbital electron populations 1.20906 0.85664 1.05079 1.04529 1.21900 0.98806 0.86921 0.92463 1.22572 0.92975 1.00953 0.98890 1.20318 0.94516 0.92644 1.01230 1.17928 0.84055 0.82768 0.79107 1.90715 1.25410 1.83443 1.44383 1.48553 1.31563 1.09868 1.42719 1.22497 0.87969 1.00272 0.90811 1.23388 1.02604 0.95458 0.97294 1.21381 0.90036 0.91441 0.91542 0.90711 1.42708 1.44441 1.30486 1.19015 1.19618 1.14470 1.02600 0.99611 0.90138 1.25439 1.01173 1.02420 0.97333 1.69812 1.34792 1.42716 1.14517 0.85172 0.77661 0.79495 0.77994 1.18915 1.22440 1.22861 1.21893 0.97816 0.80746 0.96580 0.89572 1.21785 1.01101 1.00521 0.96297 1.18793 0.95669 0.92308 1.02596 1.21336 0.92707 1.00128 0.99253 1.21380 1.02023 0.91432 0.97724 1.21365 0.93151 0.99944 0.96212 1.21096 0.95119 0.95703 1.00350 1.19196 0.89072 0.93535 0.99283 1.67709 1.08797 1.29239 1.12744 0.88949 0.88727 0.89269 0.82939 0.91496 0.89369 0.90036 0.89281 0.78706 0.94249 0.93714 0.93136 0.91656 0.85534 0.82670 0.81227 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 10.14 71.24 0.72 -1.01 16 2 C 0.15 3.61 6.78 42.95 0.29 3.90 16 3 C -0.13 -3.48 7.95 22.68 0.18 -3.30 16 4 C -0.08 -2.28 5.40 -19.68 -0.11 -2.39 16 5 C 0.57 19.15 6.95 86.80 0.60 19.75 16 6 O -0.56 -21.41 14.01 -3.87 -0.05 -21.46 16 7 N -0.60 -18.74 3.07 -791.39 -2.43 -21.17 16 8 C 0.11 2.97 5.27 86.85 0.46 3.43 16 9 C -0.15 -4.27 6.77 31.98 0.22 -4.06 16 10 C 0.17 5.84 3.45 46.18 0.16 6.00 16 11 H 0.08 2.57 8.12 -2.39 -0.02 2.55 16 12 N -0.72 -32.82 4.67 -317.33 -1.48 -34.30 16 13 C -0.23 -11.70 9.98 84.03 0.84 -10.86 16 14 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 15 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 16 N -0.97 -56.39 13.06 21.65 0.28 -56.11 16 17 Si 0.97 44.01 29.55 68.60 2.03 46.04 16 18 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 20 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 21 C 0.13 4.45 3.40 45.34 0.15 4.60 16 22 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 23 C -0.14 -5.17 8.48 71.98 0.61 -4.56 16 24 C -0.09 -2.62 5.76 -21.10 -0.12 -2.74 16 25 C -0.12 -3.04 9.17 22.26 0.20 -2.83 16 26 C -0.11 -2.01 9.96 22.07 0.22 -1.79 16 27 C -0.09 -1.34 9.94 22.03 0.22 -1.12 16 28 C -0.10 -2.04 9.98 22.37 0.22 -1.82 16 29 C 0.11 2.90 6.61 40.33 0.27 3.17 16 30 N -0.47 -12.37 10.19 -176.84 -1.80 -14.17 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.32 8.07 -2.39 -0.02 1.30 16 33 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.15 3.74 6.08 -2.91 -0.02 3.72 16 35 H 0.07 2.01 7.04 -2.39 -0.02 1.99 16 36 H 0.09 2.10 7.35 -2.39 -0.02 2.08 16 37 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 38 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.38 18.78 5.49 -92.71 -0.51 18.27 16 40 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.04 1.86 6.20 -2.39 -0.01 1.85 16 42 H 0.05 1.89 7.09 -2.38 -0.02 1.87 16 43 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 44 H 0.13 3.74 5.91 -2.91 -0.02 3.72 16 45 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 46 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 47 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -66.98 377.86 2.64 -64.35 By element: Atomic # 1 Polarization: 35.33 SS G_CDS: 0.49 Total: 35.83 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 5.60 Total: 1.00 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -5.43 Total: -125.75 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.05 Total: -21.46 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -66.98 2.64 -64.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987457682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.678 kcal (2) G-P(sol) polarization free energy of solvation -66.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds