Wall clock time and date at job start Tue Mar 31 2020 22:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39311 * 119.05614 * 2 1 4 4 C 1.38855 * 119.57149 * 180.02562 * 3 2 1 5 5 C 1.47908 * 121.11425 * 179.97438 * 4 3 2 6 6 O 1.21535 * 120.00307 * 218.62769 * 5 4 3 7 7 N 1.34776 * 119.99484 * 38.61950 * 5 4 3 8 8 C 1.47427 * 125.65172 * 4.98141 * 7 5 4 9 9 C 1.55126 * 104.72384 * 155.81543 * 8 7 5 10 10 C 1.55159 * 101.48681 * 37.29090 * 9 8 7 11 11 H 1.08999 * 110.71732 * 82.70273 * 10 9 8 12 12 N 1.46501 * 110.72184 * 205.97046 * 10 9 8 13 13 C 1.36940 * 120.00117 * 268.52877 * 12 10 9 14 14 H 1.08005 * 119.99825 * 359.97438 * 13 12 10 15 15 C 1.38803 * 120.00070 * 179.97438 * 13 12 10 16 16 N 1.31623 * 120.00247 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00127 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46963 * 59.99542 * 17 15 13 19 19 H 1.48497 * 109.47388 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46697 * 299.99876 * 17 15 13 21 21 C 1.47029 * 125.64523 * 185.28222 * 7 5 4 22 22 H 1.09000 * 109.87967 * 300.59482 * 21 7 5 23 23 C 1.52994 * 109.88291 * 61.60983 * 21 7 5 24 24 C 1.41823 * 117.77686 * 0.02562 * 4 3 2 25 25 C 1.40105 * 121.35586 * 179.97438 * 24 4 3 26 26 C 1.36248 * 119.64100 * 180.29797 * 25 24 4 27 27 C 1.39358 * 120.83199 * 359.40732 * 26 25 24 28 28 C 1.36069 * 121.04787 * 0.62757 * 27 26 25 29 29 C 1.40710 * 119.74320 * 359.67850 * 28 27 26 30 30 N 1.30969 * 119.05583 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47494 * 89.99682 * 1 2 3 32 32 H 1.09000 * 109.47194 * 209.99757 * 1 2 3 33 33 H 1.09005 * 109.47188 * 329.99508 * 1 2 3 34 34 H 1.07997 * 120.21750 * 0.02562 * 3 2 1 35 35 H 1.09000 * 110.36113 * 274.74446 * 8 7 5 36 36 H 1.08989 * 110.36673 * 37.06242 * 8 7 5 37 37 H 1.09005 * 111.19258 * 279.19138 * 9 8 7 38 38 H 1.08994 * 110.93924 * 155.29010 * 9 8 7 39 39 H 0.96997 * 119.99849 * 88.51880 * 12 10 9 40 40 H 0.96997 * 119.99755 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.47440 * 58.54387 * 23 21 7 42 42 H 1.08997 * 109.47470 * 178.54847 * 23 21 7 43 43 H 1.09004 * 109.46995 * 298.54764 * 23 21 7 44 44 H 1.08001 * 120.17975 * 0.03247 * 25 24 4 45 45 H 1.08001 * 119.58546 * 179.70082 * 26 25 24 46 46 H 1.07995 * 119.47490 * 180.30915 * 27 26 25 47 47 H 1.07998 * 120.12358 * 179.66013 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1836 1.2178 0.0000 4 6 3.5721 1.2303 -0.0005 5 6 4.3250 2.5034 -0.0011 6 8 5.3418 2.6078 -0.6586 7 7 3.8832 3.5477 0.7273 8 6 2.7303 3.5282 1.6459 9 6 3.0082 4.6759 2.6519 10 6 3.6515 5.7456 1.7303 11 1 2.8837 6.3191 1.2110 12 7 4.5307 6.6306 2.4985 13 6 4.0352 7.7871 3.0391 14 1 2.9963 8.0469 2.8989 15 6 4.8680 8.6253 3.7674 16 7 6.1340 8.3084 3.9387 17 14 4.1923 10.2032 4.5043 18 1 3.0950 9.8775 5.4503 19 1 5.2755 10.9146 5.2294 20 1 3.6690 11.0717 3.4193 21 6 4.4676 4.8969 0.7328 22 1 5.5094 4.8483 1.0495 23 6 4.3773 5.5087 -0.6666 24 6 4.2443 -0.0185 -0.0016 25 6 5.6433 -0.0934 -0.0028 26 6 6.2529 -1.3119 -0.0100 27 6 5.5023 -2.4861 -0.0038 28 6 4.1421 -2.4495 -0.0033 29 6 3.4771 -1.2095 -0.0021 30 7 2.1431 -1.1449 0.0005 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6318 2.1461 0.0004 35 1 1.8063 3.7156 1.0989 36 1 2.6764 2.5724 2.1669 37 1 3.7048 4.3593 3.4283 38 1 2.0802 5.0439 3.0892 39 1 5.4637 6.3973 2.6242 40 1 6.7159 8.8940 4.4480 41 1 3.3340 5.5470 -0.9798 42 1 4.7887 6.5179 -0.6492 43 1 4.9449 4.8970 -1.3679 44 1 6.2354 0.8098 -0.0023 45 1 7.3314 -1.3686 -0.0157 46 1 6.0083 -3.4402 -0.0047 47 1 3.5752 -3.3687 -0.0040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987457684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:31 Heat of formation + Delta-G solvation = 37.724385 kcal Electronic energy + Delta-G solvation = -29184.737025 eV Core-core repulsion = 25332.605106 eV Total energy + Delta-G solvation = -3852.131919 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.35467 -39.81476 -37.65253 -37.46559 -34.30905 -33.66471 -32.25217 -31.71086 -31.00166 -30.24558 -29.08207 -28.01634 -25.37211 -24.88607 -23.65099 -22.98567 -22.71649 -21.97199 -20.21557 -19.07380 -18.32880 -17.59215 -17.34648 -17.02896 -16.24081 -15.66439 -15.12098 -15.02455 -14.83615 -14.61954 -14.38165 -13.97185 -13.74255 -13.52780 -13.49843 -13.32473 -13.24309 -12.95988 -12.78711 -12.49425 -12.24253 -12.00161 -11.79911 -11.68880 -11.59987 -11.53135 -11.25161 -11.08746 -10.88533 -10.70397 -10.65891 -10.33427 -10.29248 -10.09216 -9.79561 -9.48967 -9.00624 -8.90451 -8.58164 -8.41371 -7.09882 -5.86603 -3.17705 -0.03012 0.56514 1.56759 2.56586 2.78855 2.96728 3.38043 3.42871 3.44067 3.87503 3.88147 4.16422 4.40333 4.48462 4.50001 4.62342 4.85110 4.86777 4.92948 5.07742 5.08346 5.18062 5.24058 5.26390 5.30371 5.38069 5.48340 5.49818 5.56852 5.58523 5.66874 5.69558 5.81757 5.85804 5.87361 5.99339 6.05259 6.12189 6.20510 6.27559 6.30978 6.35730 6.49022 6.52305 6.61250 6.62878 6.82943 7.54028 7.59996 7.65791 8.08220 8.30362 9.41945 9.95355 10.29994 11.35324 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017735 B = 0.002687 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.435033 B =10419.470643 C =11172.907063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.156 3.844 3 C -0.141 4.141 4 C -0.053 4.053 5 C 0.571 3.429 6 O -0.527 6.527 7 N -0.598 5.598 8 C 0.094 3.906 9 C -0.156 4.156 10 C 0.178 3.822 11 H 0.069 0.931 12 N -0.713 5.713 13 C -0.247 4.247 14 H 0.072 0.928 15 C -0.008 4.008 16 N -0.929 5.929 17 Si 0.909 3.091 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C 0.125 3.875 22 H 0.081 0.919 23 C -0.154 4.154 24 C -0.074 4.074 25 C -0.086 4.086 26 C -0.120 4.120 27 C -0.096 4.096 28 C -0.100 4.100 29 C 0.132 3.868 30 N -0.466 5.466 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.146 0.854 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.386 0.614 40 H 0.258 0.742 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.146 0.854 45 H 0.129 0.871 46 H 0.130 0.870 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.530 -20.010 -8.401 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.003 3.997 3 C -0.161 4.161 4 C -0.064 4.064 5 C 0.358 3.642 6 O -0.405 6.405 7 N -0.330 5.330 8 C -0.029 4.029 9 C -0.198 4.198 10 C 0.066 3.934 11 H 0.087 0.913 12 N -0.353 5.353 13 C -0.378 4.378 14 H 0.090 0.910 15 C -0.205 4.205 16 N -0.576 5.576 17 Si 0.739 3.261 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.211 1.211 21 C 0.022 3.978 22 H 0.099 0.901 23 C -0.213 4.213 24 C -0.076 4.076 25 C -0.104 4.104 26 C -0.138 4.138 27 C -0.116 4.116 28 C -0.119 4.119 29 C 0.011 3.989 30 N -0.176 5.176 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.164 0.836 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.221 0.779 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.164 0.836 45 H 0.147 0.853 46 H 0.148 0.852 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.397 -20.639 -8.716 23.926 hybrid contribution 0.421 1.544 0.535 1.687 sum -7.976 -19.095 -8.182 22.252 Atomic orbital electron populations 1.20799 0.88077 1.03981 1.03486 1.21415 0.97280 0.87604 0.93388 1.22373 0.93453 1.00050 1.00239 1.20397 0.93928 0.93259 0.98822 1.17668 0.84348 0.82186 0.79948 1.90758 1.24016 1.82732 1.43007 1.48494 1.31547 1.10586 1.42400 1.22614 0.88342 1.00564 0.91370 1.23650 1.02341 0.95665 0.98108 1.21236 0.92355 0.89738 0.90094 0.91282 1.42339 1.09495 1.22496 1.60987 1.19156 0.94815 0.97237 1.26567 0.90997 1.24771 0.95670 0.99133 1.00936 1.69654 1.04271 1.38680 1.45044 0.86253 0.77623 0.83249 0.78930 1.21171 1.21652 1.21144 1.22058 0.98866 0.79894 0.97013 0.90103 1.22046 1.01562 1.01639 0.96012 1.18619 0.95024 0.92163 1.01835 1.21397 0.93033 0.99568 0.96428 1.21024 1.00599 0.92114 1.00062 1.20962 0.93716 0.98788 0.98127 1.20759 0.94198 0.96020 1.00899 1.18785 0.88786 0.92788 0.98575 1.67625 1.08721 1.28827 1.12431 0.89990 0.90087 0.90164 0.83601 0.91357 0.91175 0.90531 0.90301 0.77937 0.93255 0.92981 0.90784 0.92164 0.83649 0.85278 0.85188 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.14 36.01 0.37 -0.37 16 2 C 0.16 1.67 6.78 -82.56 -0.56 1.11 16 3 C -0.14 -1.57 7.94 -38.95 -0.31 -1.88 16 4 C -0.05 -0.73 5.40 -104.34 -0.56 -1.29 16 5 C 0.57 8.98 6.94 -12.30 -0.09 8.90 16 6 O -0.53 -9.66 14.01 5.33 0.07 -9.59 16 7 N -0.60 -8.97 3.06 -163.96 -0.50 -9.47 16 8 C 0.09 1.18 5.29 -2.41 -0.01 1.17 16 9 C -0.16 -2.43 6.78 -24.46 -0.17 -2.59 16 10 C 0.18 3.24 3.14 -66.10 -0.21 3.03 16 11 H 0.07 1.24 7.80 -51.93 -0.41 0.84 16 12 N -0.71 -16.76 5.22 -51.65 -0.27 -17.03 16 13 C -0.25 -6.45 9.96 -15.06 -0.15 -6.60 16 14 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 15 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 16 N -0.93 -27.16 13.06 55.49 0.72 -26.44 16 17 Si 0.91 21.54 29.55 -169.99 -5.02 16.51 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.12 2.12 3.18 -66.95 -0.21 1.91 16 22 H 0.08 1.56 7.72 -51.93 -0.40 1.16 16 23 C -0.15 -2.47 9.11 37.15 0.34 -2.13 16 24 C -0.07 -1.03 5.76 -106.52 -0.61 -1.64 16 25 C -0.09 -1.14 9.17 -39.60 -0.36 -1.50 16 26 C -0.12 -1.26 9.96 -39.88 -0.40 -1.66 16 27 C -0.10 -0.89 9.94 -39.94 -0.40 -1.28 16 28 C -0.10 -1.06 9.99 -39.43 -0.39 -1.45 16 29 C 0.13 1.72 6.61 -84.87 -0.56 1.15 16 30 N -0.47 -5.82 10.19 -7.25 -0.07 -5.90 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.42 8.07 -51.93 -0.42 0.00 16 34 H 0.15 1.32 6.07 -52.49 -0.32 1.01 16 35 H 0.07 0.70 7.04 -51.93 -0.37 0.33 16 36 H 0.07 0.82 7.34 -51.94 -0.38 0.43 16 37 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.39 9.86 7.57 -40.82 -0.31 9.55 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 1.00 7.06 -51.93 -0.37 0.63 16 44 H 0.15 2.13 5.92 -52.49 -0.31 1.82 16 45 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 47 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -31.51 381.74 -10.33 -41.84 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.63 Total: 9.77 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -4.38 Total: -5.45 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.12 Total: -58.83 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.07 Total: -9.59 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.51 -10.33 -41.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987457684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.564 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds