Wall clock time and date at job start Tue Mar 31 2020 22:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39311 * 119.05614 * 2 1 4 4 C 1.38855 * 119.57149 * 180.02562 * 3 2 1 5 5 C 1.47908 * 121.11425 * 179.97438 * 4 3 2 6 6 O 1.21535 * 120.00307 * 218.62769 * 5 4 3 7 7 N 1.34776 * 119.99484 * 38.61950 * 5 4 3 8 8 C 1.47427 * 125.65172 * 4.98141 * 7 5 4 9 9 C 1.55126 * 104.72384 * 155.81543 * 8 7 5 10 10 C 1.55159 * 101.48681 * 37.29090 * 9 8 7 11 11 H 1.08999 * 110.71732 * 82.70273 * 10 9 8 12 12 N 1.46501 * 110.72184 * 205.97046 * 10 9 8 13 13 C 1.36940 * 120.00117 * 268.52877 * 12 10 9 14 14 H 1.08005 * 119.99825 * 359.97438 * 13 12 10 15 15 C 1.38803 * 120.00070 * 179.97438 * 13 12 10 16 16 N 1.31623 * 120.00247 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00127 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46963 * 59.99542 * 17 15 13 19 19 H 1.48497 * 109.47388 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46697 * 299.99876 * 17 15 13 21 21 C 1.47029 * 125.64523 * 185.28222 * 7 5 4 22 22 H 1.09000 * 109.87967 * 300.59482 * 21 7 5 23 23 C 1.52994 * 109.88291 * 61.60983 * 21 7 5 24 24 C 1.41823 * 117.77686 * 0.02562 * 4 3 2 25 25 C 1.40105 * 121.35586 * 179.97438 * 24 4 3 26 26 C 1.36248 * 119.64100 * 180.29797 * 25 24 4 27 27 C 1.39358 * 120.83199 * 359.40732 * 26 25 24 28 28 C 1.36069 * 121.04787 * 0.62757 * 27 26 25 29 29 C 1.40710 * 119.74320 * 359.67850 * 28 27 26 30 30 N 1.30969 * 119.05583 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47494 * 89.99682 * 1 2 3 32 32 H 1.09000 * 109.47194 * 209.99757 * 1 2 3 33 33 H 1.09005 * 109.47188 * 329.99508 * 1 2 3 34 34 H 1.07997 * 120.21750 * 0.02562 * 3 2 1 35 35 H 1.09000 * 110.36113 * 274.74446 * 8 7 5 36 36 H 1.08989 * 110.36673 * 37.06242 * 8 7 5 37 37 H 1.09005 * 111.19258 * 279.19138 * 9 8 7 38 38 H 1.08994 * 110.93924 * 155.29010 * 9 8 7 39 39 H 0.96997 * 119.99849 * 88.51880 * 12 10 9 40 40 H 0.96997 * 119.99755 * 180.02562 * 16 15 13 41 41 H 1.08999 * 109.47440 * 58.54387 * 23 21 7 42 42 H 1.08997 * 109.47470 * 178.54847 * 23 21 7 43 43 H 1.09004 * 109.46995 * 298.54764 * 23 21 7 44 44 H 1.08001 * 120.17975 * 0.03247 * 25 24 4 45 45 H 1.08001 * 119.58546 * 179.70082 * 26 25 24 46 46 H 1.07995 * 119.47490 * 180.30915 * 27 26 25 47 47 H 1.07998 * 120.12358 * 179.66013 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1836 1.2178 0.0000 4 6 3.5721 1.2303 -0.0005 5 6 4.3250 2.5034 -0.0011 6 8 5.3418 2.6078 -0.6586 7 7 3.8832 3.5477 0.7273 8 6 2.7303 3.5282 1.6459 9 6 3.0082 4.6759 2.6519 10 6 3.6515 5.7456 1.7303 11 1 2.8837 6.3191 1.2110 12 7 4.5307 6.6306 2.4985 13 6 4.0352 7.7871 3.0391 14 1 2.9963 8.0469 2.8989 15 6 4.8680 8.6253 3.7674 16 7 6.1340 8.3084 3.9387 17 14 4.1923 10.2032 4.5043 18 1 3.0950 9.8775 5.4503 19 1 5.2755 10.9146 5.2294 20 1 3.6690 11.0717 3.4193 21 6 4.4676 4.8969 0.7328 22 1 5.5094 4.8483 1.0495 23 6 4.3773 5.5087 -0.6666 24 6 4.2443 -0.0185 -0.0016 25 6 5.6433 -0.0934 -0.0028 26 6 6.2529 -1.3119 -0.0100 27 6 5.5023 -2.4861 -0.0038 28 6 4.1421 -2.4495 -0.0033 29 6 3.4771 -1.2095 -0.0021 30 7 2.1431 -1.1449 0.0005 31 1 -0.3634 0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5139 34 1 1.6318 2.1461 0.0004 35 1 1.8063 3.7156 1.0989 36 1 2.6764 2.5724 2.1669 37 1 3.7048 4.3593 3.4283 38 1 2.0802 5.0439 3.0892 39 1 5.4637 6.3973 2.6242 40 1 6.7159 8.8940 4.4480 41 1 3.3340 5.5470 -0.9798 42 1 4.7887 6.5179 -0.6492 43 1 4.9449 4.8970 -1.3679 44 1 6.2354 0.8098 -0.0023 45 1 7.3314 -1.3686 -0.0157 46 1 6.0083 -3.4402 -0.0047 47 1 3.5752 -3.3687 -0.0040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987457684.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:30 Heat of formation + Delta-G solvation = 18.935818 kcal Electronic energy + Delta-G solvation = -29185.551759 eV Core-core repulsion = 25332.605106 eV Total energy + Delta-G solvation = -3852.946653 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.31443 -40.98783 -38.90519 -38.37271 -35.98718 -34.73953 -33.31820 -32.99609 -32.30853 -31.34955 -30.51022 -28.72696 -26.93643 -25.93053 -25.02564 -24.27167 -23.54885 -23.12577 -21.62173 -20.27915 -19.20488 -19.15565 -18.50490 -18.15032 -17.54122 -16.65058 -16.61746 -16.13657 -15.81664 -15.69263 -15.51317 -15.41142 -15.02458 -14.88971 -14.60667 -14.36831 -14.19573 -13.93789 -13.91117 -13.60926 -13.38032 -13.15922 -13.02701 -12.91443 -12.66872 -12.63169 -12.50223 -12.38672 -12.31041 -12.20807 -12.12709 -11.77912 -11.70447 -11.49678 -11.40650 -10.90765 -10.50290 -9.82201 -9.73088 -9.30966 -9.03746 -7.93793 -5.24182 -0.93710 -0.27973 0.63185 1.49758 1.52387 1.53072 1.58475 1.70072 1.93285 2.57546 2.99342 3.09605 3.16363 3.38877 3.54337 3.60018 3.67225 3.72941 3.80818 3.94010 4.08935 4.12808 4.14773 4.27564 4.33119 4.37428 4.38975 4.44318 4.49245 4.61179 4.64344 4.69975 4.84172 4.87029 4.88699 4.99777 5.00219 5.03682 5.17755 5.18032 5.20525 5.24632 5.33775 5.40928 5.45027 5.50810 5.54780 5.82604 6.25768 6.34380 6.79953 6.86939 7.32613 8.04044 8.27643 9.29524 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017735 B = 0.002687 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.435033 B =10419.470643 C =11172.907063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.151 3.849 3 C -0.125 4.125 4 C -0.078 4.078 5 C 0.571 3.429 6 O -0.564 6.564 7 N -0.597 5.597 8 C 0.101 3.899 9 C -0.148 4.148 10 C 0.174 3.826 11 H 0.081 0.919 12 N -0.729 5.729 13 C -0.237 4.237 14 H 0.086 0.914 15 C -0.076 4.076 16 N -0.972 5.972 17 Si 0.973 3.027 18 H -0.275 1.275 19 H -0.302 1.302 20 H -0.277 1.277 21 C 0.132 3.868 22 H 0.045 0.955 23 C -0.144 4.144 24 C -0.094 4.094 25 C -0.120 4.120 26 C -0.111 4.111 27 C -0.090 4.090 28 C -0.103 4.103 29 C 0.112 3.888 30 N -0.477 5.477 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.172 0.828 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.370 0.630 40 H 0.250 0.750 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.120 0.880 45 H 0.150 0.850 46 H 0.169 0.831 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.903 -21.706 -8.788 26.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.002 4.002 3 C -0.145 4.145 4 C -0.089 4.089 5 C 0.360 3.640 6 O -0.444 6.444 7 N -0.329 5.329 8 C -0.021 4.021 9 C -0.189 4.189 10 C 0.064 3.936 11 H 0.099 0.901 12 N -0.367 5.367 13 C -0.369 4.369 14 H 0.104 0.896 15 C -0.268 4.268 16 N -0.623 5.623 17 Si 0.802 3.198 18 H -0.201 1.201 19 H -0.229 1.229 20 H -0.203 1.203 21 C 0.027 3.973 22 H 0.064 0.936 23 C -0.202 4.202 24 C -0.096 4.096 25 C -0.139 4.139 26 C -0.129 4.129 27 C -0.109 4.109 28 C -0.121 4.121 29 C -0.009 4.009 30 N -0.187 5.187 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.123 0.877 34 H 0.189 0.811 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.115 0.885 39 H 0.202 0.798 40 H 0.059 0.941 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.138 0.862 45 H 0.168 0.832 46 H 0.186 0.814 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.841 -22.372 -9.119 26.905 hybrid contribution 1.450 1.938 0.596 2.493 sum -10.391 -20.434 -8.523 24.457 Atomic orbital electron populations 1.20933 0.85071 1.05339 1.04705 1.22061 0.99091 0.86892 0.92109 1.22663 0.92270 1.01429 0.98147 1.20273 0.95020 0.91996 1.01639 1.18032 0.83950 0.82779 0.79225 1.90732 1.25719 1.83354 1.44614 1.48482 1.32124 1.09573 1.42722 1.22779 0.88691 1.00051 0.90579 1.23462 1.02121 0.95665 0.97637 1.21437 0.91897 0.89876 0.90409 0.90096 1.42525 1.09494 1.22957 1.61767 1.19607 0.95184 0.97340 1.24722 0.89595 1.25584 0.96023 1.02579 1.02605 1.69831 1.05690 1.39887 1.46844 0.85215 0.76707 0.79608 0.78235 1.20082 1.22878 1.20252 1.21761 0.96999 0.81261 0.97240 0.93637 1.21940 1.02746 1.00500 0.95062 1.18803 0.95355 0.92817 1.02660 1.21321 0.93204 0.99848 0.99483 1.21354 1.01893 0.91667 0.97988 1.21342 0.93365 0.99699 0.96499 1.21112 0.94939 0.95962 1.00135 1.19118 0.89226 0.93240 0.99314 1.67716 1.08454 1.29734 1.12786 0.88650 0.89825 0.87748 0.81097 0.87347 0.89662 0.92990 0.88506 0.79791 0.94150 0.90615 0.91956 0.93208 0.86221 0.83213 0.81394 0.82593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 10.14 71.24 0.72 -0.31 16 2 C 0.15 2.84 6.78 42.95 0.29 3.13 16 3 C -0.12 -2.48 7.94 22.68 0.18 -2.30 16 4 C -0.08 -2.13 5.40 -19.68 -0.11 -2.24 16 5 C 0.57 18.31 6.94 86.80 0.60 18.91 16 6 O -0.56 -21.93 14.01 -3.83 -0.05 -21.99 16 7 N -0.60 -17.66 3.06 -790.94 -2.42 -20.08 16 8 C 0.10 2.27 5.29 86.93 0.46 2.73 16 9 C -0.15 -4.37 6.78 32.06 0.22 -4.16 16 10 C 0.17 6.22 3.14 46.18 0.14 6.37 16 11 H 0.08 2.74 7.80 -2.39 -0.02 2.72 16 12 N -0.73 -34.91 5.22 -317.33 -1.66 -36.57 16 13 C -0.24 -12.35 9.96 84.03 0.84 -11.51 16 14 H 0.09 4.16 7.83 -2.91 -0.02 4.13 16 15 C -0.08 -4.20 5.50 84.86 0.47 -3.74 16 16 N -0.97 -58.79 13.06 21.65 0.28 -58.50 16 17 Si 0.97 44.58 29.55 68.60 2.03 46.60 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 C 0.13 4.56 3.18 45.34 0.14 4.71 16 22 H 0.05 1.90 7.72 -2.39 -0.02 1.88 16 23 C -0.14 -4.64 9.11 71.98 0.66 -3.98 16 24 C -0.09 -2.63 5.76 -21.09 -0.12 -2.75 16 25 C -0.12 -3.33 9.17 22.26 0.20 -3.13 16 26 C -0.11 -2.27 9.96 22.08 0.22 -2.05 16 27 C -0.09 -1.46 9.94 22.03 0.22 -1.24 16 28 C -0.10 -1.98 9.99 22.37 0.22 -1.76 16 29 C 0.11 2.80 6.61 40.33 0.27 3.06 16 30 N -0.48 -11.02 10.19 -176.85 -1.80 -12.82 16 31 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.10 0.56 8.07 -2.38 -0.02 0.54 16 34 H 0.17 2.37 6.07 -2.91 -0.02 2.35 16 35 H 0.11 1.66 7.04 -2.39 -0.02 1.64 16 36 H 0.09 1.74 7.34 -2.39 -0.02 1.72 16 37 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 39 H 0.37 19.88 7.57 -92.71 -0.70 19.17 16 40 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 43 H 0.05 1.69 7.06 -2.39 -0.02 1.68 16 44 H 0.12 3.87 5.92 -2.91 -0.02 3.85 16 45 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 46 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 47 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -72.60 381.74 2.30 -70.30 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.30 Total: 33.32 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 5.63 Total: -0.27 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -5.60 Total: -127.97 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -72.60 2.30 -70.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987457684.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.237 kcal (2) G-P(sol) polarization free energy of solvation -72.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds