Wall clock time and date at job start Tue Mar 31 2020 22:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36620 * 120.91929 * 2 1 4 4 C 1.39263 * 119.91219 * 179.97438 * 3 2 1 5 5 N 1.31149 * 121.76696 * 0.02807 * 4 3 2 6 6 C 1.33620 * 121.39234 * 359.95176 * 5 4 3 7 7 C 1.40759 * 120.82931 * 180.02562 * 6 5 4 8 8 C 1.35695 * 120.11378 * 180.02562 * 7 6 5 9 9 C 1.40634 * 120.92348 * 359.94777 * 8 7 6 10 10 C 1.47765 * 119.80459 * 180.02562 * 9 8 7 11 11 O 1.21557 * 120.00060 * 155.28660 * 10 9 8 12 12 N 1.34773 * 119.99796 * 335.29677 * 10 9 8 13 13 C 1.47424 * 125.64935 * 354.28317 * 12 10 9 14 14 C 1.54914 * 104.83418 * 204.10965 * 13 12 10 15 15 H 1.09001 * 111.03546 * 81.08028 * 14 13 12 16 16 N 1.46500 * 111.00527 * 204.91661 * 14 13 12 17 17 C 1.36931 * 119.99898 * 267.19434 * 16 14 13 18 18 H 1.07996 * 119.99993 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99872 * 179.72460 * 17 16 14 20 20 N 1.31617 * 119.99966 * 0.27848 * 19 17 16 21 21 Si 1.86797 * 119.99882 * 180.27534 * 19 17 16 22 22 H 1.48496 * 109.47441 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46866 * 120.00309 * 21 19 17 24 24 H 1.48500 * 109.47208 * 239.99959 * 21 19 17 25 25 C 1.55158 * 101.58162 * 322.99428 * 14 13 12 26 26 C 1.47022 * 125.65015 * 174.26236 * 12 10 9 27 27 H 1.09007 * 110.01137 * 59.46842 * 26 12 10 28 28 C 1.53001 * 109.88460 * 298.38099 * 26 12 10 29 29 C 1.38549 * 120.39423 * 0.28627 * 9 8 7 30 30 C 1.40186 * 119.40322 * 359.51090 * 29 9 8 31 31 H 1.09002 * 109.46940 * 270.01306 * 1 2 3 32 32 H 1.08997 * 109.47812 * 30.01917 * 1 2 3 33 33 H 1.09007 * 109.46912 * 150.02164 * 1 2 3 34 34 H 1.08007 * 120.03855 * 0.02562 * 3 2 1 35 35 H 1.08005 * 119.11885 * 180.02562 * 4 3 2 36 36 H 1.08010 * 119.94371 * 0.02562 * 7 6 5 37 37 H 1.08003 * 119.54319 * 179.97438 * 8 7 6 38 38 H 1.09003 * 110.36801 * 85.27163 * 13 12 10 39 39 H 1.08995 * 110.37087 * 322.94939 * 13 12 10 40 40 H 0.96995 * 119.99758 * 87.19782 * 16 14 13 41 41 H 0.97001 * 120.00238 * 179.97438 * 20 19 17 42 42 H 1.08993 * 110.72428 * 153.86201 * 25 14 13 43 43 H 1.09004 * 110.71724 * 276.96337 * 25 14 13 44 44 H 1.09009 * 109.46611 * 302.18950 * 28 26 12 45 45 H 1.08993 * 109.47352 * 62.18136 * 28 26 12 46 46 H 1.08995 * 109.47596 * 182.19193 * 28 26 12 47 47 H 1.08006 * 120.29668 * 179.71968 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1721 0.0000 4 6 3.6014 1.1476 0.0005 5 7 4.2721 0.0206 0.0005 6 6 3.6480 -1.1609 0.0009 7 6 4.3797 -2.3633 0.0014 8 6 3.7309 -3.5551 0.0013 9 6 2.3258 -3.6130 0.0018 10 6 1.6447 -4.9244 0.0022 11 8 0.5161 -5.0229 0.4427 12 7 2.2751 -6.0112 -0.4856 13 6 3.5888 -6.0145 -1.1545 14 6 3.5805 -7.2865 -2.0387 15 1 3.0467 -7.1104 -2.9726 16 7 4.9442 -7.7554 -2.2969 17 6 5.6085 -7.3433 -3.4211 18 1 5.1274 -6.6722 -4.1171 19 6 6.9028 -7.7831 -3.6629 20 7 7.4893 -8.6006 -2.8144 21 14 7.8119 -7.2147 -5.1925 22 1 6.9392 -6.3055 -5.9779 23 1 9.0472 -6.4930 -4.7946 24 1 8.1723 -8.3934 -6.0208 25 6 2.8095 -8.2871 -1.1377 26 6 1.7666 -7.3898 -0.4385 27 1 0.8125 -7.4536 -0.9617 28 6 1.5924 -7.8308 1.0162 29 6 1.5762 -2.4478 -0.0036 30 6 2.2309 -1.2082 0.0009 31 1 -0.3633 0.0002 1.0277 32 1 -0.3634 0.8897 -0.5141 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6847 2.1163 0.0004 35 1 4.1435 2.0817 0.0010 36 1 5.4595 -2.3373 0.0019 37 1 4.3015 -4.4721 0.0013 38 1 4.3898 -6.0702 -0.4173 39 1 3.7022 -5.1238 -1.7724 40 1 5.3764 -8.3579 -1.6716 41 1 8.3935 -8.9083 -2.9835 42 1 2.3187 -9.0505 -1.7412 43 1 3.4788 -8.7447 -0.4091 44 1 2.5460 -7.7474 1.5378 45 1 0.8549 -7.1931 1.5034 46 1 1.2526 -8.8661 1.0439 47 1 0.4971 -2.4942 -0.0078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988888446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:08 Heat of formation + Delta-G solvation = 38.977710 kcal Electronic energy + Delta-G solvation = -29024.034828 eV Core-core repulsion = 25171.957257 eV Total energy + Delta-G solvation = -3852.077571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.19071 -40.03179 -37.65978 -36.73639 -34.90708 -34.26383 -32.20525 -31.45103 -30.52103 -30.32353 -28.48947 -28.10164 -25.70397 -24.91581 -23.89261 -23.64215 -21.96150 -21.14422 -20.39679 -19.48190 -18.37679 -17.44771 -17.28815 -16.77092 -16.28557 -15.64563 -15.24549 -14.87351 -14.63322 -14.47390 -14.27353 -14.03837 -13.76818 -13.62348 -13.36256 -13.31446 -13.26830 -13.01885 -12.73796 -12.63320 -12.44462 -12.17952 -11.92100 -11.81847 -11.71361 -11.43300 -11.18132 -11.01299 -10.74031 -10.68688 -10.38171 -10.30833 -10.06083 -9.87623 -9.77859 -9.65815 -9.08212 -8.93434 -8.50838 -8.28102 -7.14562 -5.90031 -3.21208 0.08577 0.54675 1.74511 2.37913 3.06581 3.25327 3.36964 3.43861 3.45263 3.95628 4.10391 4.27069 4.37847 4.43130 4.53806 4.55931 4.84433 4.93400 4.95480 5.07336 5.10894 5.13328 5.20836 5.22050 5.26108 5.44788 5.45891 5.52027 5.62027 5.66734 5.72729 5.74365 5.76754 5.82889 5.90312 6.00131 6.07975 6.12645 6.16182 6.21822 6.28078 6.34011 6.38402 6.43011 6.58259 6.65998 6.76528 7.60015 7.69683 7.73323 8.24225 8.27954 9.39723 9.92043 10.27102 11.31754 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010018 B = 0.003413 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.391862 B = 8202.905247 C =10417.480146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.014 4.014 3 C -0.189 4.189 4 C 0.140 3.860 5 N -0.480 5.480 6 C 0.146 3.854 7 C -0.098 4.098 8 C -0.081 4.081 9 C -0.122 4.122 10 C 0.572 3.428 11 O -0.547 6.547 12 N -0.602 5.602 13 C 0.066 3.934 14 C 0.172 3.828 15 H 0.069 0.931 16 N -0.710 5.710 17 C -0.250 4.250 18 H 0.073 0.927 19 C -0.006 4.006 20 N -0.928 5.928 21 Si 0.907 3.093 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C -0.138 4.138 26 C 0.139 3.861 27 H 0.074 0.926 28 C -0.161 4.161 29 C -0.036 4.036 30 C -0.113 4.113 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.137 0.863 35 H 0.159 0.841 36 H 0.143 0.857 37 H 0.152 0.848 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.007 14.865 7.668 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.022 4.022 3 C -0.209 4.209 4 C -0.032 4.032 5 N -0.189 5.189 6 C 0.025 3.975 7 C -0.117 4.117 8 C -0.101 4.101 9 C -0.125 4.125 10 C 0.361 3.639 11 O -0.427 6.427 12 N -0.334 5.334 13 C -0.059 4.059 14 C 0.059 3.941 15 H 0.087 0.913 16 N -0.350 5.350 17 C -0.381 4.381 18 H 0.091 0.909 19 C -0.203 4.203 20 N -0.575 5.575 21 Si 0.738 3.262 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C -0.177 4.177 26 C 0.035 3.965 27 H 0.092 0.908 28 C -0.219 4.219 29 C -0.056 4.056 30 C -0.115 4.115 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.155 0.845 35 H 0.176 0.824 36 H 0.160 0.840 37 H 0.169 0.831 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.222 0.778 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -12.607 14.791 7.734 20.917 hybrid contribution 0.022 0.239 -0.602 0.648 sum -12.585 15.030 7.132 20.861 Atomic orbital electron populations 1.20927 0.89864 1.03826 1.03383 1.20224 0.96701 0.92040 0.93215 1.21733 0.95640 0.98682 1.04837 1.22978 0.91492 0.96497 0.92274 1.68083 1.39920 0.97725 1.13129 1.19026 0.89537 0.92577 0.96352 1.20759 1.00830 0.89638 1.00431 1.21672 0.93345 0.99688 0.95399 1.19929 0.93986 0.93413 1.05130 1.17859 0.85039 0.83063 0.77941 1.90732 1.18106 1.85659 1.48185 1.48491 1.21382 1.06542 1.57019 1.23819 0.82897 1.03010 0.96189 1.21320 0.87826 0.90029 0.94901 0.91303 1.42321 1.10562 1.55609 1.26473 1.19294 0.95976 1.23663 0.99170 0.90876 1.24763 0.97239 0.99636 0.98687 1.69663 1.14304 1.36705 1.36853 0.86130 0.79786 0.77870 0.82457 1.20430 1.21694 1.21743 1.23058 0.97341 0.97891 0.99402 1.21536 0.97737 0.80595 0.96588 0.90788 1.22127 1.02330 1.01370 0.96037 1.21365 1.00301 0.89744 0.94205 1.18635 0.94122 0.93871 1.04919 0.89940 0.90521 0.90460 0.84527 0.82361 0.83964 0.83053 0.90829 0.90683 0.77803 0.93331 0.90206 0.90279 0.92437 0.91817 0.91684 0.84046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.60 36.00 0.35 -0.54 16 2 C -0.01 -0.14 5.92 -104.22 -0.62 -0.75 16 3 C -0.19 -1.63 9.72 -39.79 -0.39 -2.02 16 4 C 0.14 1.38 11.14 -17.46 -0.19 1.19 16 5 N -0.48 -6.36 10.33 -10.92 -0.11 -6.48 16 6 C 0.15 2.04 6.61 -84.78 -0.56 1.48 16 7 C -0.10 -1.35 9.95 -39.54 -0.39 -1.74 16 8 C -0.08 -1.14 7.96 -39.59 -0.32 -1.45 16 9 C -0.12 -1.77 5.66 -104.98 -0.59 -2.37 16 10 C 0.57 9.19 7.38 -12.37 -0.09 9.10 16 11 O -0.55 -9.86 15.84 5.32 0.08 -9.78 16 12 N -0.60 -9.28 3.06 -164.15 -0.50 -9.78 16 13 C 0.07 1.08 4.67 -2.53 -0.01 1.07 16 14 C 0.17 3.09 3.71 -65.78 -0.24 2.85 16 15 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 16 N -0.71 -16.16 5.24 -51.35 -0.27 -16.42 16 17 C -0.25 -6.45 9.96 -15.06 -0.15 -6.60 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 20 N -0.93 -26.51 13.06 55.49 0.72 -25.79 16 21 Si 0.91 21.44 29.55 -169.99 -5.02 16.42 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 C -0.14 -2.06 6.12 -24.90 -0.15 -2.22 16 26 C 0.14 1.99 3.43 -66.95 -0.23 1.76 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 28 C -0.16 -2.12 9.10 37.16 0.34 -1.78 16 29 C -0.04 -0.48 8.88 -38.74 -0.34 -0.82 16 30 C -0.11 -1.44 5.74 -106.82 -0.61 -2.06 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.40 8.10 -51.93 -0.42 -0.02 16 33 H 0.08 0.57 6.51 -51.92 -0.34 0.23 16 34 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.16 1.03 8.06 -52.48 -0.42 0.60 16 36 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 37 H 0.15 2.10 4.54 -52.48 -0.24 1.86 16 38 H 0.07 1.22 6.80 -51.93 -0.35 0.86 16 39 H 0.07 1.23 6.83 -51.93 -0.35 0.88 16 40 H 0.39 9.39 7.76 -40.82 -0.32 9.07 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.08 1.20 7.72 -51.93 -0.40 0.80 16 44 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 45 H 0.06 0.92 7.10 -51.93 -0.37 0.55 16 46 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.14 1.70 6.20 -52.48 -0.33 1.38 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -31.13 380.14 -10.15 -41.28 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.46 Total: 10.00 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -4.31 Total: -5.18 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: -0.16 Total: -58.47 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.13 -10.15 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988888446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.258 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds