Wall clock time and date at job start Tue Mar 31 2020 22:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36620 * 120.91929 * 2 1 4 4 C 1.39263 * 119.91219 * 179.97438 * 3 2 1 5 5 N 1.31149 * 121.76696 * 0.02807 * 4 3 2 6 6 C 1.33620 * 121.39234 * 359.95176 * 5 4 3 7 7 C 1.40759 * 120.82931 * 180.02562 * 6 5 4 8 8 C 1.35695 * 120.11378 * 180.02562 * 7 6 5 9 9 C 1.40634 * 120.92348 * 359.94777 * 8 7 6 10 10 C 1.47765 * 119.80459 * 180.02562 * 9 8 7 11 11 O 1.21557 * 120.00060 * 155.28660 * 10 9 8 12 12 N 1.34773 * 119.99796 * 335.29677 * 10 9 8 13 13 C 1.47424 * 125.64935 * 354.28317 * 12 10 9 14 14 C 1.54914 * 104.83418 * 204.10965 * 13 12 10 15 15 H 1.09001 * 111.03546 * 81.08028 * 14 13 12 16 16 N 1.46500 * 111.00527 * 204.91661 * 14 13 12 17 17 C 1.36931 * 119.99898 * 267.19434 * 16 14 13 18 18 H 1.07996 * 119.99993 * 0.02562 * 17 16 14 19 19 C 1.38814 * 119.99872 * 179.72460 * 17 16 14 20 20 N 1.31617 * 119.99966 * 0.27848 * 19 17 16 21 21 Si 1.86797 * 119.99882 * 180.27534 * 19 17 16 22 22 H 1.48496 * 109.47441 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.46866 * 120.00309 * 21 19 17 24 24 H 1.48500 * 109.47208 * 239.99959 * 21 19 17 25 25 C 1.55158 * 101.58162 * 322.99428 * 14 13 12 26 26 C 1.47022 * 125.65015 * 174.26236 * 12 10 9 27 27 H 1.09007 * 110.01137 * 59.46842 * 26 12 10 28 28 C 1.53001 * 109.88460 * 298.38099 * 26 12 10 29 29 C 1.38549 * 120.39423 * 0.28627 * 9 8 7 30 30 C 1.40186 * 119.40322 * 359.51090 * 29 9 8 31 31 H 1.09002 * 109.46940 * 270.01306 * 1 2 3 32 32 H 1.08997 * 109.47812 * 30.01917 * 1 2 3 33 33 H 1.09007 * 109.46912 * 150.02164 * 1 2 3 34 34 H 1.08007 * 120.03855 * 0.02562 * 3 2 1 35 35 H 1.08005 * 119.11885 * 180.02562 * 4 3 2 36 36 H 1.08010 * 119.94371 * 0.02562 * 7 6 5 37 37 H 1.08003 * 119.54319 * 179.97438 * 8 7 6 38 38 H 1.09003 * 110.36801 * 85.27163 * 13 12 10 39 39 H 1.08995 * 110.37087 * 322.94939 * 13 12 10 40 40 H 0.96995 * 119.99758 * 87.19782 * 16 14 13 41 41 H 0.97001 * 120.00238 * 179.97438 * 20 19 17 42 42 H 1.08993 * 110.72428 * 153.86201 * 25 14 13 43 43 H 1.09004 * 110.71724 * 276.96337 * 25 14 13 44 44 H 1.09009 * 109.46611 * 302.18950 * 28 26 12 45 45 H 1.08993 * 109.47352 * 62.18136 * 28 26 12 46 46 H 1.08995 * 109.47596 * 182.19193 * 28 26 12 47 47 H 1.08006 * 120.29668 * 179.71968 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1721 0.0000 4 6 3.6014 1.1476 0.0005 5 7 4.2721 0.0206 0.0005 6 6 3.6480 -1.1609 0.0009 7 6 4.3797 -2.3633 0.0014 8 6 3.7309 -3.5551 0.0013 9 6 2.3258 -3.6130 0.0018 10 6 1.6447 -4.9244 0.0022 11 8 0.5161 -5.0229 0.4427 12 7 2.2751 -6.0112 -0.4856 13 6 3.5888 -6.0145 -1.1545 14 6 3.5805 -7.2865 -2.0387 15 1 3.0467 -7.1104 -2.9726 16 7 4.9442 -7.7554 -2.2969 17 6 5.6085 -7.3433 -3.4211 18 1 5.1274 -6.6722 -4.1171 19 6 6.9028 -7.7831 -3.6629 20 7 7.4893 -8.6006 -2.8144 21 14 7.8119 -7.2147 -5.1925 22 1 6.9392 -6.3055 -5.9779 23 1 9.0472 -6.4930 -4.7946 24 1 8.1723 -8.3934 -6.0208 25 6 2.8095 -8.2871 -1.1377 26 6 1.7666 -7.3898 -0.4385 27 1 0.8125 -7.4536 -0.9617 28 6 1.5924 -7.8308 1.0162 29 6 1.5762 -2.4478 -0.0036 30 6 2.2309 -1.2082 0.0009 31 1 -0.3633 0.0002 1.0277 32 1 -0.3634 0.8897 -0.5141 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6847 2.1163 0.0004 35 1 4.1435 2.0817 0.0010 36 1 5.4595 -2.3373 0.0019 37 1 4.3015 -4.4721 0.0013 38 1 4.3898 -6.0702 -0.4173 39 1 3.7022 -5.1238 -1.7724 40 1 5.3764 -8.3579 -1.6716 41 1 8.3935 -8.9083 -2.9835 42 1 2.3187 -9.0505 -1.7412 43 1 3.4788 -8.7447 -0.4091 44 1 2.5460 -7.7474 1.5378 45 1 0.8549 -7.1931 1.5034 46 1 1.2526 -8.8661 1.0439 47 1 0.4971 -2.4942 -0.0078 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988888446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:07 Heat of formation + Delta-G solvation = 21.133270 kcal Electronic energy + Delta-G solvation = -29024.808621 eV Core-core repulsion = 25171.957257 eV Total energy + Delta-G solvation = -3852.851364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.16272 -41.20990 -38.94438 -37.79950 -36.03035 -35.69708 -33.44466 -33.13641 -31.49236 -31.31161 -30.09975 -28.81571 -26.93946 -26.12003 -25.52144 -24.63783 -23.14142 -22.08823 -21.81420 -20.64229 -19.47621 -19.23045 -18.33252 -17.85207 -17.45181 -16.90652 -16.49777 -16.15161 -15.72568 -15.52164 -15.44436 -15.32725 -15.22485 -14.80222 -14.70425 -14.33187 -14.22984 -14.00027 -13.80128 -13.74730 -13.50275 -13.36062 -13.09485 -12.90230 -12.84261 -12.74800 -12.70943 -12.46744 -12.21349 -12.04011 -12.01706 -11.75912 -11.49255 -11.22649 -11.13950 -10.92066 -10.52239 -9.91232 -9.75019 -9.28621 -9.04777 -7.95125 -5.24610 -0.84239 -0.38165 0.81402 1.34241 1.49096 1.50879 1.59306 1.83935 2.15660 2.56303 3.00804 3.19246 3.31543 3.36986 3.44618 3.60036 3.72114 3.78345 3.81903 3.92467 3.98097 3.99710 4.15563 4.19165 4.32304 4.42384 4.45978 4.49380 4.50166 4.68213 4.71500 4.71753 4.74158 4.81491 4.83659 4.87293 4.99923 5.04148 5.11615 5.13068 5.17445 5.21278 5.28739 5.36277 5.41103 5.48738 5.54935 5.73957 6.26118 6.41061 6.88154 6.98919 7.34560 8.04782 8.29632 9.27586 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010018 B = 0.003413 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.391862 B = 8202.905247 C =10417.480146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.019 4.019 3 C -0.179 4.179 4 C 0.143 3.857 5 N -0.516 5.516 6 C 0.130 3.870 7 C -0.110 4.110 8 C -0.085 4.085 9 C -0.146 4.146 10 C 0.573 3.427 11 O -0.569 6.569 12 N -0.601 5.601 13 C 0.083 3.917 14 C 0.165 3.835 15 H 0.065 0.935 16 N -0.720 5.720 17 C -0.242 4.242 18 H 0.077 0.923 19 C -0.065 4.065 20 N -0.963 5.963 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.295 1.295 24 H -0.295 1.295 25 C -0.125 4.125 26 C 0.137 3.863 27 H 0.080 0.920 28 C -0.153 4.153 29 C -0.027 4.027 30 C -0.130 4.130 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.179 0.821 35 H 0.194 0.806 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.379 0.621 41 H 0.251 0.749 42 H 0.094 0.906 43 H 0.079 0.921 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.087 0.913 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.777 17.286 7.553 23.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.027 4.027 3 C -0.198 4.198 4 C -0.028 4.028 5 N -0.226 5.226 6 C 0.009 3.991 7 C -0.128 4.128 8 C -0.105 4.105 9 C -0.149 4.149 10 C 0.364 3.636 11 O -0.451 6.451 12 N -0.333 5.333 13 C -0.042 4.042 14 C 0.054 3.946 15 H 0.083 0.917 16 N -0.358 5.358 17 C -0.374 4.374 18 H 0.095 0.905 19 C -0.258 4.258 20 N -0.613 5.613 21 Si 0.795 3.205 22 H -0.192 1.192 23 H -0.223 1.223 24 H -0.222 1.222 25 C -0.163 4.163 26 C 0.035 3.965 27 H 0.098 0.902 28 C -0.211 4.211 29 C -0.046 4.046 30 C -0.132 4.132 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.196 0.804 35 H 0.211 0.789 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.212 0.788 41 H 0.060 0.940 42 H 0.112 0.888 43 H 0.097 0.903 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.106 0.894 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.426 17.234 7.618 23.731 hybrid contribution 0.463 -0.303 -0.529 0.765 sum -13.963 16.931 7.089 23.062 Atomic orbital electron populations 1.21015 0.87688 1.04822 1.04346 1.20628 0.98299 0.91381 0.92404 1.22188 0.95170 0.99885 1.02546 1.23717 0.92674 0.96694 0.89724 1.68112 1.40943 0.98343 1.15181 1.19176 0.90252 0.92924 0.96735 1.20836 1.01004 0.90004 1.01005 1.21537 0.93219 0.99553 0.96142 1.19867 0.94186 0.93169 1.07644 1.18062 0.84749 0.83510 0.77316 1.90708 1.19019 1.86037 1.49294 1.48481 1.20899 1.07090 1.56822 1.23445 0.83363 1.01707 0.95708 1.21468 0.85889 0.91607 0.95660 0.91687 1.42398 1.12125 1.55698 1.25624 1.19618 0.95954 1.22256 0.99559 0.90522 1.25446 0.98356 1.00656 1.01386 1.69793 1.14328 1.38588 1.38632 0.85204 0.78469 0.77241 0.79623 1.19211 1.22252 1.22185 1.22955 0.97011 0.97508 0.98846 1.21636 0.97572 0.79832 0.97492 0.90237 1.22060 1.01812 1.02448 0.94746 1.21522 1.00682 0.89641 0.92778 1.18848 0.93978 0.94847 1.05556 0.88844 0.87979 0.91047 0.80387 0.78938 0.83920 0.83709 0.91253 0.91084 0.78845 0.93966 0.88773 0.90280 0.92807 0.93027 0.89381 0.83094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 9.60 71.24 0.68 -0.68 16 2 C -0.02 -0.33 5.92 -19.60 -0.12 -0.45 16 3 C -0.18 -2.41 9.72 22.14 0.22 -2.19 16 4 C 0.14 2.43 11.14 85.04 0.95 3.38 16 5 N -0.52 -13.21 10.33 -188.47 -1.95 -15.16 16 6 C 0.13 3.62 6.61 40.37 0.27 3.88 16 7 C -0.11 -3.15 9.95 22.30 0.22 -2.93 16 8 C -0.08 -2.48 7.96 22.27 0.18 -2.30 16 9 C -0.15 -4.33 5.66 -20.10 -0.11 -4.44 16 10 C 0.57 18.59 7.38 86.76 0.64 19.23 16 11 O -0.57 -20.50 15.84 -3.89 -0.06 -20.56 16 12 N -0.60 -18.57 3.06 -791.51 -2.43 -21.00 16 13 C 0.08 2.75 4.67 86.86 0.41 3.15 16 14 C 0.16 5.91 3.71 46.39 0.17 6.08 16 15 H 0.07 2.40 8.09 -2.39 -0.02 2.38 16 16 N -0.72 -33.08 5.24 -316.37 -1.66 -34.74 16 17 C -0.24 -12.55 9.96 84.03 0.84 -11.71 16 18 H 0.08 3.85 7.83 -2.91 -0.02 3.83 16 19 C -0.07 -3.57 5.50 84.86 0.47 -3.10 16 20 N -0.96 -56.14 13.06 21.65 0.28 -55.85 16 21 Si 0.96 44.52 29.55 68.60 2.03 46.55 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 24 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 25 C -0.12 -3.62 6.12 31.78 0.19 -3.43 16 26 C 0.14 3.83 3.43 45.34 0.16 3.99 16 27 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 28 C -0.15 -3.87 9.10 71.98 0.66 -3.21 16 29 C -0.03 -0.70 8.88 22.82 0.20 -0.50 16 30 C -0.13 -3.21 5.74 -21.29 -0.12 -3.33 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 0.63 8.10 -2.39 -0.02 0.61 16 33 H 0.07 0.90 6.51 -2.38 -0.02 0.88 16 34 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 35 H 0.19 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 37 H 0.15 4.27 4.54 -2.91 -0.01 4.26 16 38 H 0.07 2.37 6.80 -2.39 -0.02 2.35 16 39 H 0.07 2.40 6.83 -2.39 -0.02 2.38 16 40 H 0.38 18.69 7.76 -92.71 -0.72 17.97 16 41 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.08 2.34 7.72 -2.38 -0.02 2.32 16 44 H 0.05 1.39 8.14 -2.38 -0.02 1.38 16 45 H 0.05 1.45 7.10 -2.39 -0.02 1.43 16 46 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.15 3.54 6.20 -2.91 -0.02 3.52 16 Total: -1.00 -68.12 380.14 2.39 -65.72 By element: Atomic # 1 Polarization: 33.31 SS G_CDS: 0.29 Total: 33.60 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 5.89 Total: 1.44 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -5.75 Total: -126.75 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.06 Total: -20.56 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -68.12 2.39 -65.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988888446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.856 kcal (2) G-P(sol) polarization free energy of solvation -68.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds