Wall clock time and date at job start Tue Mar 31 2020 22:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36611 * 120.92030 * 2 1 4 4 C 1.39274 * 119.90791 * 179.97438 * 3 2 1 5 5 N 1.31145 * 121.77065 * 359.97438 * 4 3 2 6 6 C 1.33623 * 121.38973 * 0.02562 * 5 4 3 7 7 C 1.40764 * 120.83057 * 180.02562 * 6 5 4 8 8 C 1.35698 * 120.11207 * 179.75945 * 7 6 5 9 9 C 1.40642 * 120.91958 * 0.51944 * 8 7 6 10 10 C 1.47771 * 119.79671 * 179.72781 * 9 8 7 11 11 O 1.21562 * 119.99883 * 158.15245 * 10 9 8 12 12 N 1.34779 * 120.00226 * 338.15366 * 10 9 8 13 13 C 1.47425 * 125.64699 * 355.53048 * 12 10 9 14 14 C 1.54911 * 104.82863 * 204.14637 * 13 12 10 15 15 H 1.09005 * 111.03260 * 81.07954 * 14 13 12 16 16 N 1.46501 * 111.00483 * 204.91170 * 14 13 12 17 17 C 1.36932 * 120.00516 * 267.20411 * 16 14 13 18 18 H 1.08002 * 119.99931 * 359.97438 * 17 16 14 19 19 C 1.38804 * 120.00425 * 180.27351 * 17 16 14 20 20 N 1.31615 * 120.00478 * 179.71719 * 19 17 16 21 21 Si 1.86807 * 119.99791 * 359.72316 * 19 17 16 22 22 H 1.48492 * 109.47180 * 89.99921 * 21 19 17 23 23 H 1.48506 * 109.47148 * 210.00032 * 21 19 17 24 24 H 1.48500 * 109.46764 * 329.99642 * 21 19 17 25 25 C 1.55150 * 101.58174 * 322.99241 * 14 13 12 26 26 C 1.47019 * 125.64780 * 175.54842 * 12 10 9 27 27 H 1.08997 * 109.88359 * 298.34003 * 26 12 10 28 28 C 1.53003 * 110.00794 * 59.43343 * 26 12 10 29 29 C 1.38542 * 120.39850 * 359.45096 * 9 8 7 30 30 C 1.40185 * 119.40117 * 0.27965 * 29 9 8 31 31 H 1.09000 * 109.46843 * 270.02107 * 1 2 3 32 32 H 1.08996 * 109.46836 * 30.02707 * 1 2 3 33 33 H 1.09009 * 109.46763 * 150.02651 * 1 2 3 34 34 H 1.08001 * 120.04990 * 359.95533 * 3 2 1 35 35 H 1.07998 * 119.11165 * 179.97438 * 4 3 2 36 36 H 1.08001 * 119.94767 * 359.97438 * 7 6 5 37 37 H 1.07997 * 119.53957 * 180.26634 * 8 7 6 38 38 H 1.09002 * 110.36685 * 85.30773 * 13 12 10 39 39 H 1.08994 * 110.36547 * 322.98396 * 13 12 10 40 40 H 0.97002 * 119.99690 * 87.19189 * 16 14 13 41 41 H 0.97002 * 120.00053 * 179.97438 * 20 19 17 42 42 H 1.09007 * 110.71923 * 153.86678 * 25 14 13 43 43 H 1.09002 * 110.71544 * 276.95738 * 25 14 13 44 44 H 1.09005 * 109.46999 * 177.88081 * 28 26 12 45 45 H 1.09003 * 109.47536 * 297.88474 * 28 26 12 46 46 H 1.09002 * 109.47310 * 57.88386 * 28 26 12 47 47 H 1.08000 * 120.29888 * 180.29521 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1474 0.0005 5 7 4.2722 0.0204 0.0016 6 6 3.6479 -1.1611 0.0016 7 6 4.3796 -2.3636 0.0032 8 6 3.7306 -3.5553 0.0082 9 6 2.3254 -3.6130 0.0008 10 6 1.6443 -4.9244 0.0004 11 8 0.4949 -5.0125 0.3863 12 7 2.2974 -6.0229 -0.4278 13 6 3.6533 -6.0455 -1.0063 14 6 3.6940 -7.3301 -1.8710 15 1 3.2259 -7.1637 -2.8412 16 7 5.0681 -7.8127 -2.0300 17 6 5.8102 -7.4217 -3.1124 18 1 5.3824 -6.7579 -3.8491 19 6 7.1101 -7.8835 -3.2660 20 7 7.8215 -7.5121 -4.3092 21 14 7.8499 -9.0322 -1.9921 22 1 7.5692 -10.4398 -2.3725 23 1 9.3184 -8.8202 -1.9278 24 1 7.2504 -8.7495 -0.6633 25 6 2.8559 -8.3118 -1.0101 26 6 1.7756 -7.3970 -0.3957 27 1 1.5794 -7.6950 0.6343 28 6 0.4882 -7.4874 -1.2175 29 6 1.5760 -2.4478 -0.0002 30 6 2.2308 -1.2083 0.0002 31 1 -0.3633 0.0004 1.0277 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3633 -0.8903 -0.5135 34 1 1.6849 2.1163 -0.0007 35 1 4.1435 2.0815 0.0001 36 1 5.4593 -2.3378 0.0041 37 1 4.3012 -4.4723 0.0138 38 1 4.4021 -6.0962 -0.2159 39 1 3.8153 -5.1647 -1.6276 40 1 5.4523 -8.4091 -1.3685 41 1 8.7301 -7.8345 -4.4163 42 1 2.4006 -9.0804 -1.6348 43 1 3.4708 -8.7636 -0.2318 44 1 0.1296 -8.5168 -1.2189 45 1 -0.2698 -6.8391 -0.7780 46 1 0.6877 -7.1709 -2.2413 47 1 0.4969 -2.4940 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988888448.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:15 Heat of formation + Delta-G solvation = 27.043300 kcal Electronic energy + Delta-G solvation = -29094.572587 eV Core-core repulsion = 25241.977501 eV Total energy + Delta-G solvation = -3852.595086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.17965 -41.24966 -39.00865 -37.81530 -36.13012 -35.70199 -33.60945 -33.27759 -31.50140 -31.29048 -30.45155 -28.82057 -26.97891 -26.09169 -25.34232 -24.64098 -23.25812 -22.12550 -21.81339 -20.70335 -19.79674 -19.40739 -18.34728 -17.78243 -17.20644 -16.99175 -16.50877 -16.29250 -15.73475 -15.60091 -15.39897 -15.29594 -15.18668 -14.96861 -14.65492 -14.50648 -14.21933 -13.99116 -13.96571 -13.80248 -13.52664 -13.31344 -13.28043 -13.10746 -12.85818 -12.75859 -12.70030 -12.46728 -12.23124 -12.03338 -11.90445 -11.82220 -11.47749 -11.22901 -11.13402 -10.89952 -10.52474 -9.91502 -9.79278 -9.34556 -9.27847 -8.00853 -5.37119 -0.84879 -0.38520 0.81008 1.33948 1.41965 1.45196 1.52174 1.81338 2.17520 2.50469 3.00731 3.14385 3.26853 3.31509 3.44057 3.56591 3.65666 3.75019 3.77780 3.80934 3.96410 3.98998 4.05846 4.21305 4.31087 4.39429 4.43735 4.44777 4.49095 4.67713 4.69843 4.71478 4.73092 4.80500 4.85716 4.86992 4.96338 5.02945 5.11437 5.12464 5.16668 5.20298 5.26497 5.34653 5.44029 5.49367 5.73682 5.78007 6.21929 6.38475 6.87952 6.98437 7.07848 7.80204 8.00349 9.20015 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011470 B = 0.003330 C = 0.002708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.592149 B = 8406.069382 C =10336.699410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.019 4.019 3 C -0.179 4.179 4 C 0.143 3.857 5 N -0.517 5.517 6 C 0.129 3.871 7 C -0.112 4.112 8 C -0.089 4.089 9 C -0.147 4.147 10 C 0.574 3.426 11 O -0.566 6.566 12 N -0.602 5.602 13 C 0.078 3.922 14 C 0.170 3.830 15 H 0.064 0.936 16 N -0.735 5.735 17 C -0.234 4.234 18 H 0.058 0.942 19 C -0.058 4.058 20 N -0.982 5.982 21 Si 0.952 3.048 22 H -0.278 1.278 23 H -0.301 1.301 24 H -0.245 1.245 25 C -0.128 4.128 26 C 0.137 3.863 27 H 0.083 0.917 28 C -0.156 4.156 29 C -0.026 4.026 30 C -0.131 4.131 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.179 0.821 35 H 0.194 0.806 36 H 0.142 0.858 37 H 0.151 0.849 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.371 0.629 41 H 0.258 0.742 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.175 13.603 12.370 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.027 4.027 3 C -0.198 4.198 4 C -0.028 4.028 5 N -0.227 5.227 6 C 0.009 3.991 7 C -0.130 4.130 8 C -0.109 4.109 9 C -0.150 4.150 10 C 0.364 3.636 11 O -0.447 6.447 12 N -0.334 5.334 13 C -0.048 4.048 14 C 0.059 3.941 15 H 0.082 0.918 16 N -0.377 5.377 17 C -0.365 4.365 18 H 0.076 0.924 19 C -0.250 4.250 20 N -0.631 5.631 21 Si 0.779 3.221 22 H -0.205 1.205 23 H -0.228 1.228 24 H -0.169 1.169 25 C -0.167 4.167 26 C 0.034 3.966 27 H 0.101 0.899 28 C -0.214 4.214 29 C -0.046 4.046 30 C -0.133 4.133 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.090 0.910 34 H 0.196 0.804 35 H 0.210 0.790 36 H 0.160 0.840 37 H 0.169 0.831 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.205 0.795 41 H 0.067 0.933 42 H 0.118 0.882 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.822 13.572 12.383 24.246 hybrid contribution 0.426 -0.675 0.184 0.819 sum -15.395 12.896 12.567 23.691 Atomic orbital electron populations 1.21015 0.87649 1.04812 1.04366 1.20634 0.98321 0.91382 0.92386 1.22188 0.95152 0.99909 1.02569 1.23719 0.92697 0.96694 0.89720 1.68114 1.40975 0.98376 1.15187 1.19200 0.90298 0.92944 0.96704 1.20857 1.01014 0.90097 1.01046 1.21698 0.93337 0.99753 0.96067 1.19879 0.94177 0.93244 1.07714 1.18027 0.85062 0.83446 0.77035 1.90704 1.17683 1.86244 1.50108 1.48444 1.17404 1.07049 1.60462 1.23491 0.82510 1.01595 0.97171 1.21410 0.84491 0.91644 0.96531 0.91817 1.42548 1.11524 1.57165 1.26471 1.18984 0.94786 1.22943 0.99814 0.92410 1.25481 0.97344 1.02383 0.99782 1.69883 1.10753 1.50609 1.31889 0.85463 0.77161 0.79114 0.80328 1.20457 1.22812 1.16947 1.23013 0.96342 0.97509 0.99798 1.21659 0.94502 0.80031 1.00360 0.89882 1.22103 0.96539 1.03321 0.99408 1.21529 1.00723 0.89646 0.92657 1.18856 0.93957 0.94905 1.05597 0.88779 0.88012 0.91050 0.80381 0.78967 0.83985 0.83136 0.90275 0.91176 0.79478 0.93344 0.88171 0.89436 0.89385 0.92610 0.93166 0.83041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.37 9.59 71.24 0.68 -0.69 16 2 C -0.02 -0.34 5.92 -19.60 -0.12 -0.46 16 3 C -0.18 -2.47 9.72 22.14 0.22 -2.26 16 4 C 0.14 2.49 11.14 85.04 0.95 3.44 16 5 N -0.52 -13.50 10.33 -188.46 -1.95 -15.45 16 6 C 0.13 3.65 6.61 40.37 0.27 3.91 16 7 C -0.11 -3.22 9.95 22.30 0.22 -3.00 16 8 C -0.09 -2.56 7.95 22.27 0.18 -2.38 16 9 C -0.15 -4.30 5.72 -20.10 -0.11 -4.42 16 10 C 0.57 17.96 7.48 86.76 0.65 18.61 16 11 O -0.57 -19.61 15.27 -3.91 -0.06 -19.67 16 12 N -0.60 -17.60 3.08 -791.53 -2.44 -20.04 16 13 C 0.08 2.42 4.64 86.86 0.40 2.83 16 14 C 0.17 5.72 3.71 46.38 0.17 5.89 16 15 H 0.06 2.34 8.09 -2.38 -0.02 2.32 16 16 N -0.73 -30.72 5.05 -316.38 -1.60 -32.31 16 17 C -0.23 -12.48 10.44 84.03 0.88 -11.60 16 18 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 19 C -0.06 -3.26 5.50 84.86 0.47 -2.79 16 20 N -0.98 -61.03 13.97 21.65 0.30 -60.73 16 21 Si 0.95 42.91 27.73 68.60 1.90 44.81 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.25 -9.67 6.52 99.48 0.65 -9.02 16 25 C -0.13 -3.26 6.14 31.78 0.20 -3.07 16 26 C 0.14 3.50 3.52 45.34 0.16 3.66 16 27 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 28 C -0.16 -3.75 9.05 71.98 0.65 -3.10 16 29 C -0.03 -0.68 8.88 22.82 0.20 -0.47 16 30 C -0.13 -3.26 5.74 -21.29 -0.12 -3.38 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 0.65 8.10 -2.39 -0.02 0.63 16 33 H 0.07 0.90 6.51 -2.38 -0.02 0.89 16 34 H 0.18 0.97 8.06 -2.91 -0.02 0.95 16 35 H 0.19 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.14 3.91 8.06 -2.91 -0.02 3.88 16 37 H 0.15 4.25 4.23 -2.91 -0.01 4.24 16 38 H 0.08 2.41 6.92 -2.39 -0.02 2.39 16 39 H 0.07 2.35 6.58 -2.39 -0.02 2.33 16 40 H 0.37 14.65 5.63 -92.71 -0.52 14.13 16 41 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 42 H 0.10 2.28 7.83 -2.38 -0.02 2.26 16 43 H 0.09 2.06 8.00 -2.39 -0.02 2.04 16 44 H 0.09 1.66 8.14 -2.38 -0.02 1.65 16 45 H 0.05 1.52 6.64 -2.39 -0.02 1.50 16 46 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.15 3.53 6.15 -2.91 -0.02 3.51 16 Total: -1.00 -72.52 375.67 2.52 -70.00 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: 0.43 Total: 32.66 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: 5.94 Total: 0.73 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -5.68 Total: -128.53 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.06 Total: -19.67 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.90 Total: 44.81 kcal Total: -72.52 2.52 -70.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988888448.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.040 kcal (2) G-P(sol) polarization free energy of solvation -72.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds