Wall clock time and date at job start Tue Mar 31 2020 22:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30818 * 119.22758 * 2 1 4 4 C 1.33793 * 121.72041 * 179.97438 * 3 2 1 5 5 C 1.40532 * 120.83026 * 179.76862 * 4 3 2 6 6 C 1.36132 * 119.81643 * 179.81319 * 5 4 3 7 7 C 1.39349 * 121.09188 * 0.47383 * 6 5 4 8 8 C 1.36142 * 120.83919 * 359.75654 * 7 6 5 9 9 C 1.40548 * 119.61435 * 0.02562 * 8 7 6 10 10 C 1.40500 * 121.22298 * 179.97438 * 9 8 7 11 11 C 1.39043 * 117.96275 * 180.02562 * 10 9 8 12 12 C 1.47757 * 120.26490 * 180.02562 * 11 10 9 13 13 O 1.21564 * 119.99954 * 132.34068 * 12 11 10 14 14 N 1.34778 * 120.00160 * 312.34490 * 12 11 10 15 15 C 1.47019 * 125.64920 * 4.26588 * 14 12 11 16 16 C 1.54335 * 107.26658 * 178.85580 * 15 14 12 17 17 H 1.09001 * 110.51604 * 96.44976 * 16 15 14 18 18 N 1.46500 * 111.00063 * 219.60182 * 16 15 14 19 19 C 1.36939 * 119.99827 * 268.78252 * 18 16 15 20 20 H 1.07993 * 120.00140 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99530 * 180.02562 * 19 18 16 22 22 N 1.31615 * 120.00423 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99378 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47191 * 90.00088 * 23 21 19 25 25 H 1.48506 * 109.46967 * 209.99873 * 23 21 19 26 26 H 1.48497 * 109.47362 * 329.99869 * 23 21 19 27 27 C 1.55157 * 103.01743 * 338.13703 * 16 15 14 28 28 C 1.47428 * 125.64464 * 184.58027 * 14 12 11 29 29 H 1.09000 * 110.37022 * 85.25065 * 28 14 12 30 30 C 1.52998 * 110.37019 * 322.92195 * 28 14 12 31 31 H 1.09001 * 109.47039 * 264.52183 * 1 2 3 32 32 H 1.09003 * 109.47237 * 24.52643 * 1 2 3 33 33 H 1.08998 * 109.47069 * 144.52617 * 1 2 3 34 34 H 1.08003 * 120.09444 * 0.27343 * 5 4 3 35 35 H 1.07991 * 119.45789 * 180.23168 * 6 5 4 36 36 H 1.08003 * 119.58453 * 179.74200 * 7 6 5 37 37 H 1.07998 * 120.19773 * 179.97438 * 8 7 6 38 38 H 1.07998 * 121.01168 * 359.97438 * 10 9 8 39 39 H 1.09002 * 109.88021 * 298.40184 * 15 14 12 40 40 H 1.08998 * 109.87940 * 59.56204 * 15 14 12 41 41 H 0.97002 * 120.00049 * 88.77524 * 18 16 15 42 42 H 0.97000 * 120.00198 * 180.02562 * 22 21 19 43 43 H 1.08991 * 111.00543 * 277.23289 * 27 16 15 44 44 H 1.09007 * 111.00307 * 153.38139 * 27 16 15 45 45 H 1.09007 * 109.46842 * 61.45661 * 30 28 14 46 46 H 1.08999 * 109.47141 * 181.45592 * 30 28 14 47 47 H 1.09002 * 109.47261 * 301.45817 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4824 1.1998 0.0005 5 6 4.1495 2.4367 -0.0044 6 6 5.5103 2.4719 0.0001 7 6 6.2605 1.2976 -0.0004 8 6 5.6512 0.0801 -0.0004 9 6 4.2477 0.0060 -0.0004 10 6 3.5838 -1.2323 -0.0010 11 6 2.1934 -1.2266 -0.0015 12 6 1.4435 -2.4997 -0.0016 13 8 0.5237 -2.6634 0.7763 14 7 1.7792 -3.4796 -0.8639 15 6 2.9188 -3.4507 -1.7923 16 6 2.9235 -4.7931 -2.5538 17 1 2.4238 -4.6878 -3.5168 18 7 4.2898 -5.2906 -2.7325 19 6 4.9974 -4.9593 -3.8571 20 1 4.5481 -4.3317 -4.6124 21 6 6.2918 -5.4312 -4.0266 22 7 6.8392 -6.1964 -3.1063 23 14 7.2568 -4.9799 -5.5611 24 1 8.0116 -3.7239 -5.3197 25 1 8.2070 -6.0734 -5.8878 26 1 6.3191 -4.7835 -6.6957 27 6 2.1166 -5.7296 -1.6161 28 6 1.0607 -4.7553 -1.0369 29 1 0.2334 -4.6330 -1.7360 30 6 0.5487 -5.2653 0.3117 31 1 -0.3633 -0.0981 1.0230 32 1 -0.3634 0.9350 -0.4266 33 1 -0.3633 -0.8369 -0.5964 34 1 3.5841 3.3569 -0.0041 35 1 6.0170 3.4256 0.0001 36 1 7.3391 1.3539 -0.0010 37 1 6.2428 -0.8234 -0.0012 38 1 4.1366 -2.1601 -0.0018 39 1 2.8043 -2.6246 -2.4941 40 1 3.8486 -3.3397 -1.2345 41 1 4.6932 -5.8545 -2.0541 42 1 7.7439 -6.5258 -3.2246 43 1 2.7507 -6.1329 -0.8267 44 1 1.6403 -6.5315 -2.1803 45 1 -0.1508 -4.5423 0.7317 46 1 0.0430 -6.2205 0.1707 47 1 1.3890 -5.3962 0.9935 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000988925156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:50 Heat of formation + Delta-G solvation = 37.699458 kcal Electronic energy + Delta-G solvation = -29506.842612 eV Core-core repulsion = 25654.709612 eV Total energy + Delta-G solvation = -3852.133000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.15927 -39.85019 -37.76906 -36.89951 -34.27541 -33.83885 -32.09662 -31.70935 -31.43127 -29.95060 -28.50167 -27.87258 -25.64518 -24.74358 -23.84143 -22.74449 -22.34184 -21.78940 -20.34749 -19.51393 -18.09251 -17.40295 -17.22372 -16.65823 -16.27522 -15.86255 -15.21787 -14.84852 -14.70118 -14.47376 -14.13930 -13.93336 -13.75990 -13.56454 -13.38785 -13.20297 -13.07201 -12.99946 -12.73353 -12.24021 -12.09389 -11.96933 -11.83334 -11.79315 -11.57162 -11.42670 -11.31933 -11.10918 -10.88291 -10.74508 -10.55606 -10.37948 -10.13684 -9.86475 -9.81348 -9.37736 -9.06857 -8.78358 -8.42679 -8.32673 -7.18894 -5.92982 -3.24370 0.19302 0.58488 1.81378 2.51794 2.92955 3.16222 3.33820 3.40385 3.41265 3.97702 4.04392 4.36445 4.45260 4.50715 4.59224 4.70821 4.83241 5.02191 5.02647 5.07367 5.16008 5.17274 5.28404 5.41647 5.47967 5.50973 5.59684 5.62776 5.67083 5.72083 5.77549 5.79322 5.82552 5.91066 6.01872 6.06608 6.08296 6.15249 6.19642 6.30612 6.34513 6.39856 6.40859 6.45049 6.63099 6.70271 6.77504 7.55946 7.66475 7.82158 8.22640 8.25281 9.36559 9.89112 10.24197 11.28713 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008171 B = 0.004411 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3425.830204 B = 6346.245495 C = 9138.075147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.204 3.796 3 N -0.483 5.483 4 C 0.145 3.855 5 C -0.104 4.104 6 C -0.091 4.091 7 C -0.126 4.126 8 C -0.079 4.079 9 C -0.114 4.114 10 C -0.012 4.012 11 C -0.178 4.178 12 C 0.580 3.420 13 O -0.535 6.535 14 N -0.602 5.602 15 C 0.068 3.932 16 C 0.172 3.828 17 H 0.069 0.931 18 N -0.711 5.711 19 C -0.251 4.251 20 H 0.073 0.927 21 C -0.006 4.006 22 N -0.929 5.929 23 Si 0.907 3.093 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C -0.138 4.138 28 C 0.137 3.863 29 H 0.075 0.925 30 C -0.163 4.163 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.136 0.864 38 H 0.151 0.849 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.387 0.613 42 H 0.257 0.743 43 H 0.077 0.923 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.058 0.942 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.644 11.967 7.054 15.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.051 3.949 3 N -0.191 5.191 4 C 0.024 3.976 5 C -0.123 4.123 6 C -0.111 4.111 7 C -0.144 4.144 8 C -0.098 4.098 9 C -0.116 4.116 10 C -0.038 4.038 11 C -0.183 4.183 12 C 0.368 3.632 13 O -0.414 6.414 14 N -0.335 5.335 15 C -0.058 4.058 16 C 0.060 3.940 17 H 0.087 0.913 18 N -0.351 5.351 19 C -0.382 4.382 20 H 0.090 0.910 21 C -0.202 4.202 22 N -0.576 5.576 23 Si 0.737 3.263 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.177 4.177 28 C 0.034 3.966 29 H 0.093 0.907 30 C -0.220 4.220 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.153 0.847 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.169 0.831 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.222 0.778 42 H 0.067 0.933 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.077 0.923 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.427 12.801 7.314 16.981 hybrid contribution 1.549 -0.698 -0.702 1.838 sum -6.878 12.103 6.613 15.411 Atomic orbital electron populations 1.20793 0.87897 1.03237 1.04010 1.21388 0.97174 0.86364 0.89997 1.67825 1.08363 1.27888 1.15072 1.18950 0.89033 0.93023 0.96594 1.20762 0.94183 0.96245 1.01087 1.20958 0.93681 0.98766 0.97701 1.20934 1.00522 0.92211 1.00747 1.21157 0.92553 0.99006 0.97085 1.18787 0.95017 0.93515 1.04232 1.22198 0.93150 0.98150 0.90263 1.20751 0.94345 0.95036 1.08193 1.17610 0.83192 0.82265 0.80136 1.90706 1.30696 1.80672 1.39326 1.48564 1.30100 1.16960 1.37859 1.23504 0.87812 1.02513 0.91934 1.21167 0.87747 0.89514 0.95574 0.91343 1.42376 1.10045 1.59019 1.23659 1.19253 0.95449 1.26178 0.97309 0.90951 1.24754 0.97336 0.99818 0.98338 1.69654 1.15289 1.38118 1.34505 0.86210 0.79942 0.77540 0.82602 1.21563 1.21644 1.20605 1.23195 0.97105 0.97545 0.99807 1.21921 0.94573 0.82580 0.97527 0.90729 1.22189 1.02274 1.01408 0.96151 0.89312 0.90498 0.90442 0.84744 0.85279 0.85294 0.84640 0.83136 0.92213 0.90870 0.77832 0.93278 0.90471 0.90013 0.89683 0.92330 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 8.94 36.01 0.32 -0.94 16 2 C 0.20 3.00 6.82 -82.15 -0.56 2.44 16 3 N -0.48 -7.21 10.20 -6.93 -0.07 -7.28 16 4 C 0.15 2.07 6.61 -84.78 -0.56 1.51 16 5 C -0.10 -1.21 9.97 -39.47 -0.39 -1.60 16 6 C -0.09 -0.89 9.94 -39.93 -0.40 -1.29 16 7 C -0.13 -1.30 9.96 -39.92 -0.40 -1.70 16 8 C -0.08 -0.96 9.77 -39.46 -0.39 -1.35 16 9 C -0.11 -1.60 5.74 -106.81 -0.61 -2.21 16 10 C -0.01 -0.17 8.38 -38.43 -0.32 -0.49 16 11 C -0.18 -2.70 5.42 -104.83 -0.57 -3.27 16 12 C 0.58 9.17 6.34 -12.37 -0.08 9.09 16 13 O -0.54 -9.13 13.21 5.31 0.07 -9.06 16 14 N -0.60 -9.19 3.24 -164.17 -0.53 -9.72 16 15 C 0.07 1.12 5.52 -3.06 -0.02 1.10 16 16 C 0.17 3.07 3.60 -66.09 -0.24 2.83 16 17 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 18 N -0.71 -16.11 5.16 -51.65 -0.27 -16.37 16 19 C -0.25 -6.41 9.96 -15.06 -0.15 -6.56 16 20 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 21 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 22 N -0.93 -26.29 13.06 55.49 0.72 -25.57 16 23 Si 0.91 21.16 29.55 -169.99 -5.02 16.14 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C -0.14 -2.05 6.13 -24.58 -0.15 -2.21 16 28 C 0.14 1.92 3.78 -66.41 -0.25 1.67 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 30 C -0.16 -2.18 8.65 37.16 0.32 -1.86 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.97 6.98 -51.93 -0.36 0.61 16 34 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.15 2.12 6.00 -52.49 -0.31 1.80 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.27 5.76 -51.93 -0.30 0.97 16 41 H 0.39 9.40 7.76 -40.82 -0.32 9.08 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.08 1.21 7.93 -51.93 -0.41 0.80 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.08 1.25 5.88 -51.92 -0.31 0.95 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 380.53 15.07 5.73 5.73 Total: -1.00 -29.81 380.53 -10.53 -40.34 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.63 Total: 10.85 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -4.53 Total: -5.06 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.15 Total: -58.94 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.07 Total: -9.06 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.81 -10.53 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988925156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.039 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds