Wall clock time and date at job start Tue Mar 31 2020 22:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30828 * 119.23225 * 2 1 4 4 C 1.33791 * 121.72050 * 180.24024 * 3 2 1 5 5 C 1.40534 * 120.82625 * 179.74322 * 4 3 2 6 6 C 1.36129 * 119.81561 * 180.02562 * 5 4 3 7 7 C 1.39349 * 121.09277 * 0.02562 * 6 5 4 8 8 C 1.36141 * 120.83975 * 0.02562 * 7 6 5 9 9 C 1.40550 * 119.61583 * 359.97051 * 8 7 6 10 10 C 1.40495 * 121.22571 * 180.02562 * 9 8 7 11 11 C 1.39042 * 117.96333 * 180.02562 * 10 9 8 12 12 C 1.47767 * 120.26766 * 179.97438 * 11 10 9 13 13 O 1.21558 * 119.99890 * 130.24788 * 12 11 10 14 14 N 1.34776 * 119.99500 * 310.24749 * 12 11 10 15 15 C 1.47419 * 125.65202 * 354.79665 * 14 12 11 16 16 C 1.54910 * 104.83194 * 155.83308 * 15 14 12 17 17 H 1.08997 * 111.00495 * 278.89718 * 16 15 14 18 18 N 1.46502 * 111.00311 * 155.07845 * 16 15 14 19 19 C 1.36941 * 119.99318 * 86.45804 * 18 16 15 20 20 H 1.07998 * 120.00227 * 359.97438 * 19 18 16 21 21 C 1.38814 * 119.99652 * 179.72148 * 19 18 16 22 22 N 1.31615 * 120.00321 * 180.27418 * 21 19 18 23 23 Si 1.86805 * 120.00004 * 0.27705 * 21 19 18 24 24 H 1.48497 * 109.47118 * 89.99642 * 23 21 19 25 25 H 1.48505 * 109.47110 * 209.99764 * 23 21 19 26 26 H 1.48498 * 109.46876 * 330.00037 * 23 21 19 27 27 C 1.55164 * 101.58177 * 37.00941 * 16 15 14 28 28 C 1.47023 * 125.64445 * 174.75311 * 14 12 11 29 29 H 1.09002 * 109.88124 * 300.66972 * 28 14 12 30 30 C 1.53001 * 109.88304 * 61.67657 * 28 14 12 31 31 H 1.08993 * 109.47245 * 274.47356 * 1 2 3 32 32 H 1.09003 * 109.46975 * 34.47506 * 1 2 3 33 33 H 1.08999 * 109.46919 * 154.47093 * 1 2 3 34 34 H 1.07999 * 120.08998 * 0.02562 * 5 4 3 35 35 H 1.07993 * 119.45414 * 180.02562 * 6 5 4 36 36 H 1.08004 * 119.57967 * 180.02562 * 7 6 5 37 37 H 1.07996 * 120.19218 * 180.02562 * 8 7 6 38 38 H 1.08001 * 121.01623 * 0.04028 * 10 9 8 39 39 H 1.09004 * 110.37004 * 36.99678 * 15 14 12 40 40 H 1.08997 * 110.36695 * 274.67377 * 15 14 12 41 41 H 0.96995 * 120.00563 * 266.45500 * 18 16 15 42 42 H 0.96996 * 120.00599 * 180.02562 * 22 21 19 43 43 H 1.09004 * 110.71629 * 82.85997 * 27 16 15 44 44 H 1.08997 * 110.71794 * 206.13399 * 27 16 15 45 45 H 1.09000 * 109.47035 * 58.54834 * 30 28 14 46 46 H 1.08996 * 109.47179 * 178.54786 * 30 28 14 47 47 H 1.08999 * 109.46800 * 298.54517 * 30 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1459 1.1417 0.0000 4 6 3.4825 1.1998 -0.0048 5 6 4.1496 2.4367 -0.0101 6 6 5.5104 2.4718 -0.0154 7 6 6.2606 1.2975 -0.0162 8 6 5.6512 0.0800 -0.0122 9 6 4.2477 0.0058 -0.0066 10 6 3.5838 -1.2323 -0.0018 11 6 2.1934 -1.2266 0.0031 12 6 1.4434 -2.4998 0.0076 13 8 0.5517 -2.6770 0.8146 14 7 1.7480 -3.4644 -0.8829 15 6 2.7253 -3.3436 -1.9799 16 6 3.1613 -4.7985 -2.2847 17 1 3.9186 -5.1358 -1.5772 18 7 3.6409 -4.9250 -3.6632 19 6 4.9512 -4.6588 -3.9592 20 1 5.6307 -4.3552 -3.1767 21 6 5.4071 -4.7843 -5.2643 22 7 6.6677 -4.5337 -5.5481 23 14 4.2316 -5.3088 -6.6181 24 1 3.5992 -4.1065 -7.2178 25 1 4.9809 -6.0485 -7.6653 26 1 3.1801 -6.1884 -6.0471 27 6 1.8301 -5.5706 -2.0861 28 6 1.1612 -4.8120 -0.9206 29 1 1.3553 -5.3273 0.0201 30 6 -0.3470 -4.7163 -1.1595 31 1 -0.3633 0.0802 1.0245 32 1 -0.3633 0.8472 -0.5817 33 1 -0.3633 -0.9273 -0.4429 34 1 3.5841 3.3568 -0.0099 35 1 6.0170 3.4255 -0.0191 36 1 7.3391 1.3538 -0.0201 37 1 6.2429 -0.8234 -0.0125 38 1 4.1366 -2.1602 -0.0017 39 1 3.5820 -2.7498 -1.6611 40 1 2.2578 -2.8960 -2.8569 41 1 3.0306 -5.1974 -4.3661 42 1 6.9862 -4.6210 -6.4601 43 1 1.2154 -5.5168 -2.9846 44 1 2.0232 -6.6075 -1.8110 45 1 -0.5338 -4.1934 -2.0975 46 1 -0.7709 -5.7191 -1.2119 47 1 -0.8107 -4.1683 -0.3393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000988925163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:56 Heat of formation + Delta-G solvation = 21.348792 kcal Electronic energy + Delta-G solvation = -29527.429325 eV Core-core repulsion = 25674.587307 eV Total energy + Delta-G solvation = -3852.842018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.24420 -41.03811 -39.06612 -38.01600 -36.12038 -34.90942 -33.52887 -33.10006 -32.74152 -30.99738 -30.51136 -28.86983 -26.91119 -26.05154 -25.29881 -23.75828 -23.33561 -22.88733 -21.96457 -20.60104 -19.70981 -19.20519 -18.40093 -17.88187 -17.41828 -17.03049 -16.50505 -16.24548 -15.91563 -15.64387 -15.49312 -15.30287 -14.90682 -14.90087 -14.67192 -14.49496 -14.15674 -14.09340 -14.01023 -13.81815 -13.57557 -13.26617 -13.10601 -12.98216 -12.87057 -12.72684 -12.46501 -12.38873 -12.31220 -12.18616 -11.92250 -11.83275 -11.62022 -11.51607 -11.23385 -11.00954 -10.57942 -9.86061 -9.69108 -9.35864 -9.28509 -8.01424 -5.36916 -0.82299 -0.42352 0.81789 1.39953 1.40749 1.42953 1.50092 1.73633 2.00522 2.49510 2.97852 3.02293 3.17355 3.28341 3.44609 3.53838 3.59735 3.71636 3.80546 3.83657 3.96330 4.08256 4.18008 4.24226 4.28732 4.33933 4.38893 4.45806 4.47202 4.62865 4.66018 4.71291 4.71462 4.74522 4.81254 4.87972 4.99627 5.05601 5.06242 5.10216 5.23320 5.32770 5.33098 5.39872 5.42147 5.44992 5.77722 5.83106 6.21429 6.34903 6.74860 6.94813 7.07276 7.80673 7.99385 9.19095 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008817 B = 0.004268 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3174.800610 B = 6559.062419 C = 8937.086002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.187 3.813 3 N -0.494 5.494 4 C 0.123 3.877 5 C -0.118 4.118 6 C -0.077 4.077 7 C -0.118 4.118 8 C -0.098 4.098 9 C -0.130 4.130 10 C -0.013 4.013 11 C -0.196 4.196 12 C 0.585 3.415 13 O -0.552 6.552 14 N -0.600 5.600 15 C 0.080 3.920 16 C 0.170 3.830 17 H 0.069 0.931 18 N -0.738 5.738 19 C -0.232 4.232 20 H 0.064 0.936 21 C -0.055 4.055 22 N -0.979 5.979 23 Si 0.946 3.054 24 H -0.283 1.283 25 H -0.299 1.299 26 H -0.246 1.246 27 C -0.126 4.126 28 C 0.137 3.863 29 H 0.084 0.916 30 C -0.155 4.155 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.148 0.852 35 H 0.167 0.833 36 H 0.160 0.840 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.369 0.631 42 H 0.257 0.743 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.052 0.948 46 H 0.087 0.913 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.469 8.496 12.170 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.034 3.966 3 N -0.203 5.203 4 C 0.002 3.998 5 C -0.137 4.137 6 C -0.097 4.097 7 C -0.135 4.135 8 C -0.116 4.116 9 C -0.132 4.132 10 C -0.039 4.039 11 C -0.201 4.201 12 C 0.374 3.626 13 O -0.432 6.432 14 N -0.333 5.333 15 C -0.046 4.046 16 C 0.060 3.940 17 H 0.087 0.913 18 N -0.380 5.380 19 C -0.363 4.363 20 H 0.082 0.918 21 C -0.248 4.248 22 N -0.629 5.629 23 Si 0.774 3.226 24 H -0.210 1.210 25 H -0.226 1.226 26 H -0.170 1.170 27 C -0.164 4.164 28 C 0.034 3.966 29 H 0.102 0.898 30 C -0.213 4.213 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.166 0.834 35 H 0.185 0.815 36 H 0.177 0.823 37 H 0.162 0.838 38 H 0.172 0.828 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.203 0.797 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.121 0.879 45 H 0.071 0.929 46 H 0.106 0.894 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.123 9.325 12.667 18.184 hybrid contribution 0.341 -1.004 -1.184 1.590 sum -8.782 8.321 11.483 16.680 Atomic orbital electron populations 1.20777 0.86852 1.03553 1.04251 1.21670 0.98056 0.86395 0.90476 1.67824 1.09045 1.27990 1.15425 1.19395 0.89014 0.94301 0.97133 1.21045 0.95260 0.95798 1.01577 1.21417 0.92976 1.00331 0.94940 1.21383 1.02202 0.91604 0.98350 1.21361 0.91762 1.00431 0.98066 1.18985 0.96106 0.93288 1.04803 1.22157 0.92859 0.98550 0.90300 1.20738 0.94750 0.94827 1.09827 1.17656 0.82440 0.82495 0.80037 1.90737 1.31819 1.80652 1.39982 1.48514 1.41506 1.13713 1.29578 1.23277 0.91192 1.01579 0.88512 1.21402 0.94817 0.91656 0.86107 0.91270 1.42600 1.07880 1.82340 1.05177 1.19003 0.86252 1.37168 0.93881 0.91809 1.25413 0.97330 1.02356 0.99659 1.69858 1.16034 1.57301 1.19698 0.85550 0.79185 0.78428 0.79485 1.20991 1.22649 1.16977 1.22992 0.95221 1.00165 0.98008 1.21703 0.94215 0.81301 0.99360 0.89819 1.22090 0.94063 1.03384 1.01736 0.89042 0.89202 0.91079 0.83415 0.81521 0.82264 0.83772 0.82825 0.91229 0.92231 0.79661 0.93399 0.89760 0.87897 0.92878 0.89411 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.44 9.32 71.24 0.66 -1.77 16 2 C 0.19 5.60 6.82 43.27 0.29 5.90 16 3 N -0.49 -14.95 10.20 -175.85 -1.79 -16.74 16 4 C 0.12 3.48 6.61 40.29 0.27 3.75 16 5 C -0.12 -2.59 9.97 22.34 0.22 -2.37 16 6 C -0.08 -1.29 9.94 22.05 0.22 -1.07 16 7 C -0.12 -2.11 9.96 22.05 0.22 -1.89 16 8 C -0.10 -2.22 9.77 22.35 0.22 -2.00 16 9 C -0.13 -3.60 5.74 -21.28 -0.12 -3.72 16 10 C -0.01 -0.36 7.83 23.01 0.18 -0.18 16 11 C -0.20 -5.95 5.29 -20.00 -0.11 -6.06 16 12 C 0.59 18.06 6.19 86.76 0.54 18.60 16 13 O -0.55 -18.72 14.50 -3.90 -0.06 -18.78 16 14 N -0.60 -17.20 3.06 -791.53 -2.43 -19.62 16 15 C 0.08 2.53 6.34 86.86 0.55 3.08 16 16 C 0.17 5.56 3.69 46.39 0.17 5.73 16 17 H 0.07 2.34 8.13 -2.39 -0.02 2.32 16 18 N -0.74 -30.48 5.08 -316.36 -1.61 -32.08 16 19 C -0.23 -12.06 10.47 84.03 0.88 -11.18 16 20 H 0.06 3.61 8.06 -2.91 -0.02 3.59 16 21 C -0.06 -3.07 5.50 84.86 0.47 -2.60 16 22 N -0.98 -59.66 13.97 21.65 0.30 -59.36 16 23 Si 0.95 42.66 27.74 68.60 1.90 44.56 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 26 H -0.25 -9.72 6.51 99.48 0.65 -9.07 16 27 C -0.13 -3.10 6.10 31.78 0.19 -2.90 16 28 C 0.14 3.36 3.49 45.34 0.16 3.52 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 C -0.15 -3.44 9.10 71.98 0.65 -2.79 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.07 1.86 6.43 -2.39 -0.02 1.85 16 34 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 35 H 0.17 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 37 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 38 H 0.15 4.02 7.00 -2.91 -0.02 4.00 16 39 H 0.07 2.27 5.03 -2.38 -0.01 2.26 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.37 14.66 5.57 -92.71 -0.52 14.14 16 42 H 0.26 15.07 8.31 -92.71 -0.77 14.29 16 43 H 0.08 2.01 7.70 -2.38 -0.02 1.99 16 44 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.06 1.44 6.73 -2.39 -0.02 1.42 16 Total: -1.00 -68.99 379.56 2.41 -66.58 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.42 Total: 33.42 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: 5.67 Total: 2.03 kcal Atomic # 7 Polarization: -122.28 SS G_CDS: -5.52 Total: -127.81 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.06 Total: -18.78 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.90 Total: 44.56 kcal Total: -68.99 2.41 -66.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000988925163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.926 kcal (2) G-P(sol) polarization free energy of solvation -68.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds