Wall clock time and date at job start Tue Mar 31 2020 22:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39230 * 119.15193 * 2 1 4 4 C 1.36635 * 119.90283 * 180.02562 * 3 2 1 5 5 C 1.40796 * 118.15309 * 359.97438 * 4 3 2 6 6 C 1.40476 * 121.25296 * 180.02562 * 5 4 3 7 7 C 1.36320 * 120.08571 * 180.02562 * 6 5 4 8 8 C 1.38911 * 121.05278 * 359.68307 * 7 6 5 9 9 C 1.38706 * 120.72733 * 0.62376 * 8 7 6 10 10 C 1.47433 * 120.33178 * 179.67531 * 9 8 7 11 11 O 1.21599 * 120.00463 * 184.08124 * 10 9 8 12 12 N 1.34785 * 119.99932 * 4.08338 * 10 9 8 13 13 C 1.47422 * 125.64599 * 184.36711 * 12 10 9 14 14 C 1.54913 * 104.82920 * 155.89277 * 13 12 10 15 15 H 1.09002 * 111.00466 * 278.93541 * 14 13 12 16 16 N 1.46495 * 111.00397 * 155.08031 * 14 13 12 17 17 C 1.36942 * 120.00041 * 92.80588 * 16 14 13 18 18 H 1.07998 * 119.99895 * 359.97438 * 17 16 14 19 19 C 1.38811 * 120.00270 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99727 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00201 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47072 * 89.99951 * 21 19 17 23 23 H 1.48499 * 109.46993 * 209.99731 * 21 19 17 24 24 H 1.48500 * 109.46737 * 329.99851 * 21 19 17 25 25 C 1.55154 * 101.58303 * 37.00381 * 14 13 12 26 26 C 1.47027 * 125.64531 * 4.38639 * 12 10 9 27 27 H 1.08999 * 109.88423 * 300.45645 * 26 12 10 28 28 C 1.52998 * 110.00714 * 61.55076 * 26 12 10 29 29 C 1.41552 * 118.94923 * 0.02562 * 5 4 3 30 30 N 1.31235 * 119.15383 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.46939 * 269.98267 * 1 2 3 32 32 H 1.09003 * 109.47340 * 29.98237 * 1 2 3 33 33 H 1.08996 * 109.47242 * 149.98045 * 1 2 3 34 34 H 1.07996 * 120.05008 * 0.04057 * 3 2 1 35 35 H 1.07998 * 120.92182 * 179.97438 * 4 3 2 36 36 H 1.08003 * 119.95606 * 359.97438 * 6 5 4 37 37 H 1.08000 * 119.46960 * 180.02562 * 7 6 5 38 38 H 1.07998 * 119.63450 * 180.32781 * 8 7 6 39 39 H 1.08995 * 110.37041 * 37.05608 * 13 12 10 40 40 H 1.08995 * 110.45814 * 274.77492 * 13 12 10 41 41 H 0.96998 * 120.00536 * 272.80284 * 16 14 13 42 42 H 0.97001 * 120.00147 * 180.02562 * 20 19 17 43 43 H 1.08997 * 110.72215 * 206.12946 * 25 14 13 44 44 H 1.09006 * 110.86912 * 82.93094 * 25 14 13 45 45 H 1.09000 * 109.46962 * 176.51010 * 28 26 12 46 46 H 1.08996 * 109.47614 * 296.51230 * 28 26 12 47 47 H 1.09009 * 109.47232 * 56.51671 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2159 0.0000 4 6 3.5514 1.2338 -0.0005 5 6 4.2320 0.0013 -0.0005 6 6 5.6355 -0.0563 -0.0005 7 6 6.2700 -1.2629 -0.0010 8 6 5.5502 -2.4509 0.0050 9 6 4.1632 -2.4393 -0.0012 10 6 3.4080 -3.7055 -0.0019 11 8 2.1948 -3.6899 -0.0823 12 7 4.0624 -4.8805 0.0866 13 6 3.4441 -6.2164 0.0061 14 6 4.5862 -7.1546 -0.4578 15 1 4.7259 -7.0959 -1.5373 16 7 4.3353 -8.5352 -0.0371 17 6 3.6889 -9.4007 -0.8788 18 1 3.3637 -9.0653 -1.8525 19 6 3.4506 -10.7088 -0.4800 20 7 3.8464 -11.1173 0.7069 21 14 2.5682 -11.8891 -1.6279 22 1 3.5639 -12.5918 -2.4763 23 1 1.8099 -12.8839 -0.8275 24 1 1.6292 -11.1299 -2.4922 25 6 5.8050 -6.5570 0.2938 26 6 5.5109 -5.0421 0.2799 27 1 6.0496 -4.5674 -0.5403 28 6 5.9343 -4.4175 1.6108 29 6 3.4788 -1.1972 -0.0005 30 7 2.1463 -1.1461 -0.0005 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3634 0.8902 -0.5136 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6322 2.1436 0.0007 35 1 4.0942 2.1675 -0.0010 36 1 6.2127 0.8566 -0.0009 37 1 7.3495 -1.2955 -0.0006 38 1 6.0763 -3.3941 0.0099 39 1 2.6338 -6.2162 -0.7228 40 1 3.0739 -6.5244 0.9839 41 1 4.6270 -8.8364 0.8375 42 1 3.6802 -12.0315 0.9855 43 1 6.7310 -6.7750 -0.2383 44 1 5.8522 -6.9313 1.3165 45 1 6.9971 -4.5963 1.7742 46 1 5.7463 -3.3442 1.5847 47 1 5.3614 -4.8672 2.4219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989022130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:04 Heat of formation + Delta-G solvation = 84.591506 kcal Electronic energy + Delta-G solvation = -29222.432710 eV Core-core repulsion = 25372.333102 eV Total energy + Delta-G solvation = -3850.099608 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.34707 -39.91717 -37.40859 -37.29297 -34.58318 -33.60792 -32.34008 -31.68958 -31.26214 -30.27961 -28.27950 -28.02333 -25.79078 -24.20365 -24.01959 -23.01026 -22.61764 -21.66733 -20.30527 -19.18524 -18.58445 -17.54851 -16.99123 -16.55410 -16.19909 -15.66463 -15.21849 -15.05948 -14.80294 -14.43423 -14.08299 -14.05252 -13.86951 -13.35964 -13.30916 -13.11660 -13.04658 -12.89898 -12.58774 -12.54211 -12.28805 -12.18510 -12.01038 -11.84731 -11.56390 -11.19071 -11.04816 -10.96821 -10.75316 -10.55476 -10.54413 -10.25658 -10.02550 -9.84893 -9.74191 -9.13962 -8.97455 -8.78971 -8.44146 -8.19660 -7.06631 -5.82742 -3.13264 0.00076 0.62180 1.60774 2.58199 3.20631 3.33046 3.42681 3.48578 3.50273 4.01447 4.03840 4.28640 4.43415 4.52166 4.55439 4.60401 4.71297 4.76815 4.87623 4.97396 5.00062 5.05177 5.20933 5.28078 5.36790 5.46982 5.47341 5.55849 5.61821 5.66714 5.67937 5.73651 5.79854 5.84499 5.91960 5.97520 6.01348 6.09605 6.13261 6.18362 6.30173 6.30410 6.41937 6.59718 6.60263 6.70754 6.91359 7.67338 7.85427 7.95710 8.34839 8.57340 9.46966 9.99981 10.34900 11.39317 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.002713 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.355484 B =10318.547135 C =11553.762119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.157 3.843 3 C -0.175 4.175 4 C -0.057 4.057 5 C -0.122 4.122 6 C -0.073 4.073 7 C -0.134 4.134 8 C -0.101 4.101 9 C -0.110 4.110 10 C 0.564 3.436 11 O -0.504 6.504 12 N -0.608 5.608 13 C 0.085 3.915 14 C 0.172 3.828 15 H 0.068 0.932 16 N -0.710 5.710 17 C -0.247 4.247 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.931 5.931 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C -0.136 4.136 26 C 0.116 3.884 27 H 0.086 0.914 28 C -0.191 4.191 29 C 0.170 3.830 30 N -0.438 5.438 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.182 0.818 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.387 0.613 42 H 0.257 0.743 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.982 27.484 0.327 28.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.004 3.996 3 C -0.195 4.195 4 C -0.082 4.082 5 C -0.124 4.124 6 C -0.092 4.092 7 C -0.152 4.152 8 C -0.119 4.119 9 C -0.114 4.114 10 C 0.352 3.648 11 O -0.378 6.378 12 N -0.343 5.343 13 C -0.040 4.040 14 C 0.060 3.940 15 H 0.086 0.914 16 N -0.350 5.350 17 C -0.378 4.378 18 H 0.091 0.909 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.175 4.175 26 C 0.013 3.987 27 H 0.103 0.897 28 C -0.249 4.249 29 C 0.047 3.953 30 N -0.146 5.146 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.151 0.849 38 H 0.198 0.802 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.221 0.779 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.763 26.546 0.144 26.971 hybrid contribution 0.156 0.173 -0.163 0.284 sum 4.920 26.719 -0.020 27.168 Atomic orbital electron populations 1.20785 0.88624 1.03711 1.03317 1.21714 0.97549 0.88072 0.92266 1.21754 0.95062 0.99335 1.03386 1.21420 0.94476 0.96940 0.95405 1.18799 0.94798 0.93955 1.04836 1.21152 0.92559 0.98683 0.96803 1.20905 1.00583 0.91988 1.01684 1.23313 0.93785 1.01923 0.92927 1.19884 0.93150 0.92400 1.05980 1.17589 0.87036 0.82006 0.78154 1.90839 1.12678 1.86186 1.48136 1.48517 1.07946 1.06188 1.71687 1.23376 0.98881 0.79844 1.01855 1.21313 0.90252 0.85358 0.97106 0.91396 1.42295 1.68869 1.04725 1.19101 1.19272 1.29777 0.91336 0.97422 0.90916 1.24765 1.01357 0.97446 0.96972 1.69659 1.51667 1.17371 1.19109 0.86169 0.79237 0.80920 0.79754 1.21620 1.21706 1.20588 1.23032 1.00267 0.91540 1.02633 1.21942 0.82227 0.97710 0.96864 0.89708 1.22918 1.02328 1.02053 0.97579 1.18609 0.89307 0.91399 0.95992 1.68186 1.07821 1.27642 1.11000 0.90153 0.90727 0.89846 0.84615 0.84352 0.85142 0.84885 0.80200 0.91062 0.91570 0.77860 0.93364 0.90122 0.90165 0.90808 0.90652 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.14 36.00 0.37 -0.66 16 2 C 0.16 1.95 6.78 -82.48 -0.56 1.39 16 3 C -0.18 -1.63 9.64 -39.79 -0.38 -2.01 16 4 C -0.06 -0.51 9.89 -39.19 -0.39 -0.89 16 5 C -0.12 -1.39 5.74 -106.82 -0.61 -2.00 16 6 C -0.07 -0.63 9.75 -39.43 -0.38 -1.02 16 7 C -0.13 -1.15 9.93 -40.02 -0.40 -1.55 16 8 C -0.10 -1.12 6.19 -39.16 -0.24 -1.36 16 9 C -0.11 -1.67 5.61 -104.61 -0.59 -2.26 16 10 C 0.56 10.36 7.62 -12.51 -0.10 10.26 16 11 O -0.50 -11.16 15.49 5.28 0.08 -11.08 16 12 N -0.61 -10.21 3.07 -168.05 -0.52 -10.73 16 13 C 0.09 1.67 6.58 -2.53 -0.02 1.65 16 14 C 0.17 3.30 3.71 -65.78 -0.24 3.06 16 15 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 16 N -0.71 -17.17 5.24 -51.35 -0.27 -17.44 16 17 C -0.25 -6.72 9.96 -15.06 -0.15 -6.87 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 21 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C -0.14 -1.99 6.12 -24.90 -0.15 -2.14 16 26 C 0.12 1.50 2.70 -66.95 -0.18 1.32 16 27 H 0.09 0.92 6.02 -51.93 -0.31 0.60 16 28 C -0.19 -2.08 8.11 37.16 0.30 -1.78 16 29 C 0.17 2.59 6.61 -84.58 -0.56 2.03 16 30 N -0.44 -7.19 8.34 -7.01 -0.06 -7.25 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 36 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.18 1.77 2.05 -57.58 -0.12 1.66 16 39 H 0.07 1.52 8.08 -51.93 -0.42 1.10 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.39 9.86 7.77 -40.82 -0.32 9.55 16 42 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.21 7.72 -51.93 -0.40 0.80 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.08 0.81 4.29 -51.93 -0.22 0.59 16 47 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 LS Contribution 375.99 15.07 5.67 5.67 Total: -1.00 -35.14 375.99 -10.18 -45.32 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.40 Total: 8.33 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -4.38 Total: -3.19 kcal Atomic # 7 Polarization: -62.17 SS G_CDS: -0.12 Total: -62.29 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.14 -10.18 -45.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989022130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.912 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds