Wall clock time and date at job start Tue Mar 31 2020 22:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39230 * 119.15193 * 2 1 4 4 C 1.36635 * 119.90283 * 180.02562 * 3 2 1 5 5 C 1.40796 * 118.15309 * 359.97438 * 4 3 2 6 6 C 1.40476 * 121.25296 * 180.02562 * 5 4 3 7 7 C 1.36320 * 120.08571 * 180.02562 * 6 5 4 8 8 C 1.38911 * 121.05278 * 359.68307 * 7 6 5 9 9 C 1.38706 * 120.72733 * 0.62376 * 8 7 6 10 10 C 1.47433 * 120.33178 * 179.67531 * 9 8 7 11 11 O 1.21599 * 120.00463 * 184.08124 * 10 9 8 12 12 N 1.34785 * 119.99932 * 4.08338 * 10 9 8 13 13 C 1.47422 * 125.64599 * 184.36711 * 12 10 9 14 14 C 1.54913 * 104.82920 * 155.89277 * 13 12 10 15 15 H 1.09002 * 111.00466 * 278.93541 * 14 13 12 16 16 N 1.46495 * 111.00397 * 155.08031 * 14 13 12 17 17 C 1.36942 * 120.00041 * 92.80588 * 16 14 13 18 18 H 1.07998 * 119.99895 * 359.97438 * 17 16 14 19 19 C 1.38811 * 120.00270 * 180.02562 * 17 16 14 20 20 N 1.31621 * 119.99727 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00201 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47072 * 89.99951 * 21 19 17 23 23 H 1.48499 * 109.46993 * 209.99731 * 21 19 17 24 24 H 1.48500 * 109.46737 * 329.99851 * 21 19 17 25 25 C 1.55154 * 101.58303 * 37.00381 * 14 13 12 26 26 C 1.47027 * 125.64531 * 4.38639 * 12 10 9 27 27 H 1.08999 * 109.88423 * 300.45645 * 26 12 10 28 28 C 1.52998 * 110.00714 * 61.55076 * 26 12 10 29 29 C 1.41552 * 118.94923 * 0.02562 * 5 4 3 30 30 N 1.31235 * 119.15383 * 180.02562 * 2 1 3 31 31 H 1.09002 * 109.46939 * 269.98267 * 1 2 3 32 32 H 1.09003 * 109.47340 * 29.98237 * 1 2 3 33 33 H 1.08996 * 109.47242 * 149.98045 * 1 2 3 34 34 H 1.07996 * 120.05008 * 0.04057 * 3 2 1 35 35 H 1.07998 * 120.92182 * 179.97438 * 4 3 2 36 36 H 1.08003 * 119.95606 * 359.97438 * 6 5 4 37 37 H 1.08000 * 119.46960 * 180.02562 * 7 6 5 38 38 H 1.07998 * 119.63450 * 180.32781 * 8 7 6 39 39 H 1.08995 * 110.37041 * 37.05608 * 13 12 10 40 40 H 1.08995 * 110.45814 * 274.77492 * 13 12 10 41 41 H 0.96998 * 120.00536 * 272.80284 * 16 14 13 42 42 H 0.97001 * 120.00147 * 180.02562 * 20 19 17 43 43 H 1.08997 * 110.72215 * 206.12946 * 25 14 13 44 44 H 1.09006 * 110.86912 * 82.93094 * 25 14 13 45 45 H 1.09000 * 109.46962 * 176.51010 * 28 26 12 46 46 H 1.08996 * 109.47614 * 296.51230 * 28 26 12 47 47 H 1.09009 * 109.47232 * 56.51671 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2159 0.0000 4 6 3.5514 1.2338 -0.0005 5 6 4.2320 0.0013 -0.0005 6 6 5.6355 -0.0563 -0.0005 7 6 6.2700 -1.2629 -0.0010 8 6 5.5502 -2.4509 0.0050 9 6 4.1632 -2.4393 -0.0012 10 6 3.4080 -3.7055 -0.0019 11 8 2.1948 -3.6899 -0.0823 12 7 4.0624 -4.8805 0.0866 13 6 3.4441 -6.2164 0.0061 14 6 4.5862 -7.1546 -0.4578 15 1 4.7259 -7.0959 -1.5373 16 7 4.3353 -8.5352 -0.0371 17 6 3.6889 -9.4007 -0.8788 18 1 3.3637 -9.0653 -1.8525 19 6 3.4506 -10.7088 -0.4800 20 7 3.8464 -11.1173 0.7069 21 14 2.5682 -11.8891 -1.6279 22 1 3.5639 -12.5918 -2.4763 23 1 1.8099 -12.8839 -0.8275 24 1 1.6292 -11.1299 -2.4922 25 6 5.8050 -6.5570 0.2938 26 6 5.5109 -5.0421 0.2799 27 1 6.0496 -4.5674 -0.5403 28 6 5.9343 -4.4175 1.6108 29 6 3.4788 -1.1972 -0.0005 30 7 2.1463 -1.1461 -0.0005 31 1 -0.3633 -0.0003 1.0277 32 1 -0.3634 0.8902 -0.5136 33 1 -0.3633 -0.8898 -0.5141 34 1 1.6322 2.1436 0.0007 35 1 4.0942 2.1675 -0.0010 36 1 6.2127 0.8566 -0.0009 37 1 7.3495 -1.2955 -0.0006 38 1 6.0763 -3.3941 0.0099 39 1 2.6338 -6.2162 -0.7228 40 1 3.0739 -6.5244 0.9839 41 1 4.6270 -8.8364 0.8375 42 1 3.6802 -12.0315 0.9855 43 1 6.7310 -6.7750 -0.2383 44 1 5.8522 -6.9313 1.3165 45 1 6.9971 -4.5963 1.7742 46 1 5.7463 -3.3442 1.5847 47 1 5.3614 -4.8672 2.4219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989022130.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:03 Heat of formation + Delta-G solvation = 61.049403 kcal Electronic energy + Delta-G solvation = -29223.453572 eV Core-core repulsion = 25372.333102 eV Total energy + Delta-G solvation = -3851.120471 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.29469 -41.04500 -38.72599 -38.29452 -36.25356 -34.59727 -33.60615 -32.95329 -32.42723 -31.51839 -29.72811 -28.85611 -27.05103 -25.98652 -24.83607 -24.32504 -23.39114 -22.75712 -21.80504 -20.39573 -19.41490 -19.39136 -18.16883 -17.52822 -17.28459 -16.99174 -16.37662 -16.22705 -16.10165 -15.74271 -15.41495 -15.12281 -14.93642 -14.72365 -14.58117 -14.20030 -14.04309 -13.91011 -13.79488 -13.65623 -13.52975 -13.14619 -13.04127 -12.90779 -12.85906 -12.72803 -12.41581 -12.39490 -12.13999 -12.01601 -11.88631 -11.57873 -11.55241 -11.31320 -11.11145 -10.98611 -10.11222 -9.71842 -9.57106 -9.21476 -9.08662 -7.99371 -5.29308 -0.80326 -0.16050 0.76841 1.45697 1.47451 1.55738 1.78308 1.90317 2.18500 2.53579 3.13533 3.22086 3.29751 3.41908 3.51095 3.69498 3.78696 3.82511 3.92711 3.98049 4.04393 4.08449 4.15628 4.21352 4.33398 4.38676 4.44211 4.51518 4.62152 4.69033 4.71488 4.73453 4.79438 4.84644 4.93814 4.96495 5.06922 5.09018 5.14462 5.18232 5.22364 5.24883 5.34432 5.36749 5.40079 5.50270 5.62972 5.87777 6.22524 6.55695 7.11480 7.23562 7.29768 8.00596 8.25419 9.23325 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.002713 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.355484 B =10318.547135 C =11553.762119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.137 3.863 3 C -0.179 4.179 4 C -0.044 4.044 5 C -0.140 4.140 6 C -0.050 4.050 7 C -0.137 4.137 8 C -0.078 4.078 9 C -0.159 4.159 10 C 0.556 3.444 11 O -0.564 6.564 12 N -0.609 5.609 13 C 0.095 3.905 14 C 0.168 3.832 15 H 0.068 0.932 16 N -0.721 5.721 17 C -0.249 4.249 18 H 0.073 0.927 19 C -0.068 4.068 20 N -0.964 5.964 21 Si 0.971 3.029 22 H -0.281 1.281 23 H -0.295 1.295 24 H -0.275 1.275 25 C -0.122 4.122 26 C 0.115 3.885 27 H 0.120 0.880 28 C -0.184 4.184 29 C 0.138 3.862 30 N -0.507 5.507 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.174 0.826 35 H 0.187 0.813 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.192 0.808 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.378 0.622 42 H 0.253 0.747 43 H 0.110 0.890 44 H 0.076 0.924 45 H 0.113 0.887 46 H 0.081 0.919 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.722 31.502 -0.240 32.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.014 4.014 3 C -0.199 4.199 4 C -0.069 4.069 5 C -0.142 4.142 6 C -0.069 4.069 7 C -0.154 4.154 8 C -0.097 4.097 9 C -0.163 4.163 10 C 0.347 3.653 11 O -0.443 6.443 12 N -0.343 5.343 13 C -0.031 4.031 14 C 0.057 3.943 15 H 0.086 0.914 16 N -0.359 5.359 17 C -0.380 4.380 18 H 0.091 0.909 19 C -0.261 4.261 20 N -0.614 5.614 21 Si 0.800 3.200 22 H -0.208 1.208 23 H -0.222 1.222 24 H -0.201 1.201 25 C -0.160 4.160 26 C 0.013 3.987 27 H 0.137 0.863 28 C -0.241 4.241 29 C 0.015 3.985 30 N -0.216 5.216 31 H 0.104 0.896 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.191 0.809 35 H 0.204 0.796 36 H 0.195 0.805 37 H 0.196 0.804 38 H 0.208 0.792 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.211 0.789 42 H 0.062 0.938 43 H 0.129 0.871 44 H 0.095 0.905 45 H 0.131 0.869 46 H 0.099 0.901 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.547 30.611 -0.440 31.785 hybrid contribution -1.008 -0.899 0.014 1.351 sum 7.539 29.712 -0.427 30.657 Atomic orbital electron populations 1.20850 0.87814 1.03886 1.03693 1.22254 0.98581 0.88770 0.91805 1.22094 0.95824 0.99220 1.02759 1.21992 0.94452 0.97705 0.92729 1.19174 0.96309 0.93499 1.05243 1.21729 0.91334 1.00691 0.93120 1.21381 1.02581 0.90675 1.00774 1.23477 0.91956 1.03834 0.90405 1.19702 0.94680 0.90545 1.11395 1.18366 0.86837 0.83360 0.76748 1.90782 1.15349 1.87126 1.51024 1.48568 1.09638 1.04658 1.71433 1.22948 0.98467 0.82307 0.99370 1.21454 0.92136 0.83048 0.97655 0.91406 1.42405 1.68761 1.06343 1.18432 1.19604 1.28898 0.91886 0.97633 0.90879 1.25527 1.02891 0.99173 0.98526 1.69797 1.53437 1.17429 1.20763 0.85187 0.78198 0.78713 0.77940 1.20754 1.22180 1.20066 1.22967 0.98968 0.92133 1.01972 1.22278 0.79894 0.96933 0.99550 0.86291 1.22877 1.04272 1.01817 0.95145 1.18970 0.89486 0.92904 0.97178 1.68106 1.09449 1.30152 1.13921 0.89633 0.87219 0.92856 0.80853 0.79591 0.80457 0.80367 0.79187 0.94318 0.94192 0.78879 0.93832 0.87149 0.90522 0.86861 0.90124 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 10.14 71.23 0.72 -1.43 16 2 C 0.14 3.52 6.78 42.89 0.29 3.81 16 3 C -0.18 -2.91 9.64 22.13 0.21 -2.69 16 4 C -0.04 -0.61 9.89 22.52 0.22 -0.38 16 5 C -0.14 -2.82 5.74 -21.29 -0.12 -2.94 16 6 C -0.05 -0.60 9.75 22.37 0.22 -0.38 16 7 C -0.14 -1.63 9.93 21.98 0.22 -1.41 16 8 C -0.08 -1.53 6.19 22.54 0.14 -1.39 16 9 C -0.16 -4.92 5.61 -19.86 -0.11 -5.03 16 10 C 0.56 22.04 7.62 86.66 0.66 22.70 16 11 O -0.56 -27.92 15.49 -4.03 -0.06 -27.98 16 12 N -0.61 -21.56 3.07 -803.83 -2.47 -24.03 16 13 C 0.10 4.05 6.58 86.86 0.57 4.62 16 14 C 0.17 6.65 3.71 46.38 0.17 6.82 16 15 H 0.07 2.69 8.09 -2.39 -0.02 2.67 16 16 N -0.72 -36.12 5.24 -316.38 -1.66 -37.78 16 17 C -0.25 -13.93 9.96 84.03 0.84 -13.09 16 18 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 19 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 20 N -0.96 -58.83 13.06 21.65 0.28 -58.55 16 21 Si 0.97 46.85 29.55 68.60 2.03 48.87 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 25 C -0.12 -3.43 6.12 31.78 0.19 -3.23 16 26 C 0.12 2.81 2.70 45.34 0.12 2.93 16 27 H 0.12 2.16 6.02 -2.39 -0.01 2.14 16 28 C -0.18 -3.58 8.11 71.98 0.58 -2.99 16 29 C 0.14 4.27 6.61 40.62 0.27 4.54 16 30 N -0.51 -17.86 8.34 -176.10 -1.47 -19.33 16 31 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.11 1.35 8.07 -2.39 -0.02 1.33 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 35 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 36 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 37 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 38 H 0.19 3.06 2.05 -7.69 -0.02 3.05 16 39 H 0.04 1.84 8.08 -2.39 -0.02 1.82 16 40 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.38 20.04 7.77 -92.71 -0.72 19.32 16 42 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.08 2.25 7.72 -2.38 -0.02 2.23 16 45 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.08 1.53 4.29 -2.39 -0.01 1.52 16 47 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 Total: -1.00 -87.69 375.99 2.60 -85.09 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: 0.28 Total: 26.72 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: 5.67 Total: 6.98 kcal Atomic # 7 Polarization: -134.37 SS G_CDS: -5.31 Total: -139.68 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.06 Total: -27.98 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -87.69 2.60 -85.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989022130.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.138 kcal (2) G-P(sol) polarization free energy of solvation -87.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds