Wall clock time and date at job start Tue Mar 31 2020 22:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39233 * 119.15434 * 2 1 4 4 C 1.36630 * 119.90053 * 179.97438 * 3 2 1 5 5 C 1.40796 * 118.15674 * 359.97438 * 4 3 2 6 6 C 1.40480 * 121.25185 * 179.97438 * 5 4 3 7 7 C 1.36311 * 120.08077 * 180.02562 * 6 5 4 8 8 C 1.38912 * 121.05777 * 359.96224 * 7 6 5 9 9 C 1.38712 * 120.72733 * 0.05937 * 8 7 6 10 10 C 1.47436 * 120.33024 * 180.23659 * 9 8 7 11 11 O 1.21597 * 119.99945 * 216.52720 * 10 9 8 12 12 N 1.34778 * 120.00084 * 36.52240 * 10 9 8 13 13 C 1.47427 * 125.64429 * 5.02519 * 12 10 9 14 14 C 1.55138 * 104.71933 * 155.82008 * 13 12 10 15 15 H 1.08992 * 110.90524 * 155.27349 * 14 13 12 16 16 N 1.46498 * 111.22210 * 279.17699 * 14 13 12 17 17 C 1.36935 * 119.99976 * 267.20512 * 16 14 13 18 18 H 1.07997 * 120.00036 * 0.02562 * 17 16 14 19 19 C 1.38815 * 119.99944 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00129 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99980 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46817 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47190 * 120.00271 * 21 19 17 24 24 H 1.48497 * 109.46933 * 240.00272 * 21 19 17 25 25 C 1.55160 * 101.48475 * 37.29291 * 14 13 12 26 26 C 1.47014 * 125.65007 * 185.33548 * 12 10 9 27 27 H 1.08998 * 109.88531 * 300.44107 * 26 12 10 28 28 C 1.53010 * 109.88443 * 61.60528 * 26 12 10 29 29 C 1.41550 * 118.94405 * 0.02562 * 5 4 3 30 30 N 1.31227 * 119.15048 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47448 * 89.99626 * 1 2 3 32 32 H 1.08989 * 109.47315 * 210.00261 * 1 2 3 33 33 H 1.09006 * 109.47002 * 329.99855 * 1 2 3 34 34 H 1.08005 * 120.04973 * 0.02562 * 3 2 1 35 35 H 1.08002 * 120.91721 * 179.97438 * 4 3 2 36 36 H 1.08003 * 119.95958 * 0.02562 * 6 5 4 37 37 H 1.08005 * 119.46885 * 180.02562 * 7 6 5 38 38 H 1.07995 * 119.63708 * 180.02562 * 8 7 6 39 39 H 1.08996 * 110.36911 * 274.74624 * 13 12 10 40 40 H 1.09000 * 110.36823 * 37.07327 * 13 12 10 41 41 H 0.97002 * 119.99931 * 87.20222 * 16 14 13 42 42 H 0.96997 * 119.99890 * 179.97438 * 20 19 17 43 43 H 1.08997 * 110.71747 * 205.97298 * 25 14 13 44 44 H 1.09000 * 110.71552 * 82.70076 * 25 14 13 45 45 H 1.08996 * 109.46742 * 58.54721 * 28 26 12 46 46 H 1.08997 * 109.46890 * 178.54685 * 28 26 12 47 47 H 1.08999 * 109.46703 * 298.54956 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2337 0.0005 5 6 4.2320 0.0011 0.0016 6 6 5.6356 -0.0564 0.0017 7 6 6.2699 -1.2630 0.0022 8 6 5.5501 -2.4510 0.0035 9 6 4.1630 -2.4393 0.0030 10 6 3.4078 -3.7056 0.0097 11 8 2.3698 -3.7976 -0.6169 12 7 3.8680 -4.7610 0.7102 13 6 5.0489 -4.7575 1.5928 14 6 4.7979 -5.9177 2.5916 15 1 5.7381 -6.2943 2.9944 16 7 3.8963 -5.5039 3.6695 17 6 4.4090 -5.0109 4.8396 18 1 5.4780 -4.9268 4.9677 19 6 3.5546 -4.6183 5.8608 20 7 2.2516 -4.7203 5.7045 21 14 4.2540 -3.9464 7.4574 22 1 5.7370 -3.9356 7.3822 23 1 3.7585 -2.5631 7.6715 24 1 3.8225 -4.8073 8.5878 25 6 4.1228 -6.9729 1.6761 26 6 3.2793 -6.1082 0.7157 27 1 2.2488 -6.0610 1.0675 28 6 3.3242 -6.7015 -0.6940 29 6 3.4787 -1.1973 0.0016 30 7 2.1462 -1.1461 -0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6324 2.1437 0.0004 35 1 4.0943 2.1674 0.0001 36 1 6.2129 0.8564 0.0013 37 1 7.3495 -1.2957 0.0027 38 1 6.0762 -3.3942 0.0043 39 1 5.9548 -4.9405 1.0151 40 1 5.1221 -3.8089 2.1246 41 1 2.9360 -5.5791 3.5543 42 1 1.6547 -4.4463 6.4182 43 1 3.4842 -7.6369 2.2587 44 1 4.8721 -7.5418 1.1256 45 1 4.3572 -6.7389 -1.0397 46 1 2.9099 -7.7095 -0.6772 47 1 2.7374 -6.0786 -1.3691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989022136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:15 Heat of formation + Delta-G solvation = 39.649554 kcal Electronic energy + Delta-G solvation = -29857.901523 eV Core-core repulsion = 26005.853085 eV Total energy + Delta-G solvation = -3852.048438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.98397 -39.58135 -37.37926 -36.90664 -33.93294 -33.50200 -32.06009 -31.62779 -31.26596 -29.72196 -28.40256 -27.86345 -25.49902 -24.09929 -23.75150 -23.53123 -22.44302 -21.35856 -19.98364 -18.83420 -18.19765 -17.31409 -17.06942 -16.39379 -16.15885 -15.68017 -14.87807 -14.69740 -14.60595 -14.46872 -13.99012 -13.74551 -13.57733 -13.41745 -13.21249 -13.10294 -12.90388 -12.82808 -12.53590 -12.27270 -12.12118 -12.01055 -11.80676 -11.56721 -11.34685 -11.32644 -11.09126 -10.94451 -10.72090 -10.63903 -10.45131 -10.25667 -9.97388 -9.70676 -9.62005 -9.11966 -8.99288 -8.67619 -8.24447 -8.07288 -7.00680 -5.80116 -3.10436 0.23106 0.81974 1.83137 2.79615 3.26537 3.40318 3.45239 3.48284 3.51765 4.16335 4.22670 4.49086 4.54482 4.64960 4.73345 4.79367 4.92973 5.04455 5.12656 5.18836 5.25834 5.33426 5.39908 5.49555 5.55210 5.62307 5.63121 5.68159 5.73151 5.84093 5.85533 5.89994 5.93801 6.00374 6.03932 6.08405 6.20486 6.23559 6.27553 6.29887 6.45174 6.47676 6.50330 6.65369 6.74638 6.78843 6.94072 7.65835 8.01982 8.12022 8.36908 8.69398 9.48681 10.04861 10.39178 11.41873 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008541 B = 0.004438 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.581065 B = 6307.310566 C = 7487.373809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.159 3.841 3 C -0.173 4.173 4 C -0.057 4.057 5 C -0.115 4.115 6 C -0.078 4.078 7 C -0.125 4.125 8 C -0.067 4.067 9 C -0.093 4.093 10 C 0.577 3.423 11 O -0.519 6.519 12 N -0.597 5.597 13 C 0.066 3.934 14 C 0.169 3.831 15 H 0.074 0.926 16 N -0.710 5.710 17 C -0.247 4.247 18 H 0.073 0.927 19 C -0.009 4.009 20 N -0.926 5.926 21 Si 0.905 3.095 22 H -0.279 1.279 23 H -0.292 1.292 24 H -0.291 1.291 25 C -0.139 4.139 26 C 0.140 3.860 27 H 0.074 0.926 28 C -0.158 4.158 29 C 0.170 3.830 30 N -0.446 5.446 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.139 0.861 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.257 8.325 -14.646 17.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.006 3.994 3 C -0.193 4.193 4 C -0.083 4.083 5 C -0.117 4.117 6 C -0.097 4.097 7 C -0.143 4.143 8 C -0.087 4.087 9 C -0.097 4.097 10 C 0.365 3.635 11 O -0.396 6.396 12 N -0.330 5.330 13 C -0.060 4.060 14 C 0.056 3.944 15 H 0.092 0.908 16 N -0.350 5.350 17 C -0.377 4.377 18 H 0.091 0.909 19 C -0.205 4.205 20 N -0.574 5.574 21 Si 0.736 3.264 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.218 1.218 25 C -0.178 4.178 26 C 0.037 3.963 27 H 0.092 0.908 28 C -0.216 4.216 29 C 0.047 3.953 30 N -0.155 5.155 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.349 7.519 -14.844 17.479 hybrid contribution 0.591 1.366 0.995 1.790 sum 5.939 8.885 -13.849 17.493 Atomic orbital electron populations 1.20779 0.88645 1.03825 1.03139 1.21626 0.97452 0.88020 0.92322 1.21732 0.95062 0.99269 1.03259 1.21412 0.94468 0.96936 0.95468 1.18776 0.94813 0.93902 1.04251 1.21077 0.92516 0.98574 0.97528 1.20808 1.00443 0.91943 1.01067 1.21604 0.92538 0.99427 0.95153 1.19825 0.93332 0.92482 1.04012 1.17446 0.84425 0.81964 0.79629 1.90758 1.22264 1.82661 1.43890 1.48283 1.29952 1.09526 1.45274 1.23578 0.86340 1.03874 0.92200 1.21373 0.94667 0.90542 0.87803 0.90834 1.42334 1.05111 1.75283 1.12224 1.19269 0.91967 1.34929 0.91583 0.90937 1.24769 0.95285 1.01882 0.98610 1.69684 1.01249 1.53195 1.33257 0.86152 0.78004 0.78375 0.83844 1.20456 1.21922 1.21780 1.23086 0.99529 0.97889 0.97274 1.21448 0.98145 0.81453 0.95240 0.90786 1.22124 1.01677 1.00726 0.97124 1.18517 0.89250 0.91375 0.96171 1.68000 1.07996 1.28205 1.11256 0.90218 0.89908 0.90657 0.84584 0.84322 0.85101 0.84960 0.84343 0.92795 0.90271 0.77958 0.93455 0.89805 0.90799 0.92915 0.91972 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.15 36.01 0.37 -0.91 16 2 C 0.16 2.39 6.78 -82.48 -0.56 1.83 16 3 C -0.17 -2.05 9.64 -39.79 -0.38 -2.44 16 4 C -0.06 -0.66 9.89 -39.20 -0.39 -1.05 16 5 C -0.12 -1.64 5.74 -106.82 -0.61 -2.26 16 6 C -0.08 -0.89 9.75 -39.43 -0.38 -1.27 16 7 C -0.12 -1.41 9.93 -40.03 -0.40 -1.81 16 8 C -0.07 -0.93 8.14 -39.16 -0.32 -1.25 16 9 C -0.09 -1.66 5.44 -104.61 -0.57 -2.23 16 10 C 0.58 11.62 7.10 -12.51 -0.09 11.53 16 11 O -0.52 -11.86 15.27 5.28 0.08 -11.78 16 12 N -0.60 -10.96 3.06 -164.13 -0.50 -11.47 16 13 C 0.07 1.13 4.92 -2.40 -0.01 1.12 16 14 C 0.17 3.15 3.72 -65.66 -0.24 2.90 16 15 H 0.07 1.30 8.09 -51.93 -0.42 0.88 16 16 N -0.71 -17.37 5.25 -51.23 -0.27 -17.64 16 17 C -0.25 -6.66 9.96 -15.06 -0.15 -6.81 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 20 N -0.93 -28.22 13.06 55.49 0.72 -27.49 16 21 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C -0.14 -2.18 6.07 -24.90 -0.15 -2.34 16 26 C 0.14 2.41 3.43 -66.95 -0.23 2.18 16 27 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 28 C -0.16 -2.30 9.11 37.16 0.34 -1.97 16 29 C 0.17 3.07 6.58 -84.58 -0.56 2.52 16 30 N -0.45 -8.54 8.93 -7.01 -0.06 -8.60 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.15 8.14 -51.94 -0.42 0.72 16 33 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.13 1.06 8.06 -52.48 -0.42 0.63 16 38 H 0.14 1.68 5.74 -52.49 -0.30 1.38 16 39 H 0.05 0.73 6.93 -51.93 -0.36 0.37 16 40 H 0.08 1.54 7.26 -51.93 -0.38 1.16 16 41 H 0.39 10.44 7.86 -40.82 -0.32 10.12 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.07 0.95 7.85 -51.93 -0.41 0.54 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.06 1.05 7.06 -51.93 -0.37 0.69 16 LS Contribution 384.38 15.07 5.79 5.79 Total: -1.00 -35.56 384.38 -10.44 -46.01 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.75 Total: 10.56 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -4.44 Total: -2.59 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -0.11 Total: -65.21 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.78 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.56 -10.44 -46.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989022136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.656 kcal (2) G-P(sol) polarization free energy of solvation -35.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds