Wall clock time and date at job start Tue Mar 31 2020 22:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39233 * 119.15434 * 2 1 4 4 C 1.36630 * 119.90053 * 179.97438 * 3 2 1 5 5 C 1.40796 * 118.15674 * 359.97438 * 4 3 2 6 6 C 1.40480 * 121.25185 * 179.97438 * 5 4 3 7 7 C 1.36311 * 120.08077 * 180.02562 * 6 5 4 8 8 C 1.38912 * 121.05777 * 359.96224 * 7 6 5 9 9 C 1.38712 * 120.72733 * 0.05937 * 8 7 6 10 10 C 1.47436 * 120.33024 * 180.23659 * 9 8 7 11 11 O 1.21597 * 119.99945 * 216.52720 * 10 9 8 12 12 N 1.34778 * 120.00084 * 36.52240 * 10 9 8 13 13 C 1.47427 * 125.64429 * 5.02519 * 12 10 9 14 14 C 1.55138 * 104.71933 * 155.82008 * 13 12 10 15 15 H 1.08992 * 110.90524 * 155.27349 * 14 13 12 16 16 N 1.46498 * 111.22210 * 279.17699 * 14 13 12 17 17 C 1.36935 * 119.99976 * 267.20512 * 16 14 13 18 18 H 1.07997 * 120.00036 * 0.02562 * 17 16 14 19 19 C 1.38815 * 119.99944 * 179.97438 * 17 16 14 20 20 N 1.31621 * 120.00129 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99980 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46817 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47190 * 120.00271 * 21 19 17 24 24 H 1.48497 * 109.46933 * 240.00272 * 21 19 17 25 25 C 1.55160 * 101.48475 * 37.29291 * 14 13 12 26 26 C 1.47014 * 125.65007 * 185.33548 * 12 10 9 27 27 H 1.08998 * 109.88531 * 300.44107 * 26 12 10 28 28 C 1.53010 * 109.88443 * 61.60528 * 26 12 10 29 29 C 1.41550 * 118.94405 * 0.02562 * 5 4 3 30 30 N 1.31227 * 119.15048 * 180.02562 * 2 1 3 31 31 H 1.09000 * 109.47448 * 89.99626 * 1 2 3 32 32 H 1.08989 * 109.47315 * 210.00261 * 1 2 3 33 33 H 1.09006 * 109.47002 * 329.99855 * 1 2 3 34 34 H 1.08005 * 120.04973 * 0.02562 * 3 2 1 35 35 H 1.08002 * 120.91721 * 179.97438 * 4 3 2 36 36 H 1.08003 * 119.95958 * 0.02562 * 6 5 4 37 37 H 1.08005 * 119.46885 * 180.02562 * 7 6 5 38 38 H 1.07995 * 119.63708 * 180.02562 * 8 7 6 39 39 H 1.08996 * 110.36911 * 274.74624 * 13 12 10 40 40 H 1.09000 * 110.36823 * 37.07327 * 13 12 10 41 41 H 0.97002 * 119.99931 * 87.20222 * 16 14 13 42 42 H 0.96997 * 119.99890 * 179.97438 * 20 19 17 43 43 H 1.08997 * 110.71747 * 205.97298 * 25 14 13 44 44 H 1.09000 * 110.71552 * 82.70076 * 25 14 13 45 45 H 1.08996 * 109.46742 * 58.54721 * 28 26 12 46 46 H 1.08997 * 109.46890 * 178.54685 * 28 26 12 47 47 H 1.08999 * 109.46703 * 298.54956 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2337 0.0005 5 6 4.2320 0.0011 0.0016 6 6 5.6356 -0.0564 0.0017 7 6 6.2699 -1.2630 0.0022 8 6 5.5501 -2.4510 0.0035 9 6 4.1630 -2.4393 0.0030 10 6 3.4078 -3.7056 0.0097 11 8 2.3698 -3.7976 -0.6169 12 7 3.8680 -4.7610 0.7102 13 6 5.0489 -4.7575 1.5928 14 6 4.7979 -5.9177 2.5916 15 1 5.7381 -6.2943 2.9944 16 7 3.8963 -5.5039 3.6695 17 6 4.4090 -5.0109 4.8396 18 1 5.4780 -4.9268 4.9677 19 6 3.5546 -4.6183 5.8608 20 7 2.2516 -4.7203 5.7045 21 14 4.2540 -3.9464 7.4574 22 1 5.7370 -3.9356 7.3822 23 1 3.7585 -2.5631 7.6715 24 1 3.8225 -4.8073 8.5878 25 6 4.1228 -6.9729 1.6761 26 6 3.2793 -6.1082 0.7157 27 1 2.2488 -6.0610 1.0675 28 6 3.3242 -6.7015 -0.6940 29 6 3.4787 -1.1973 0.0016 30 7 2.1462 -1.1461 -0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6324 2.1437 0.0004 35 1 4.0943 2.1674 0.0001 36 1 6.2129 0.8564 0.0013 37 1 7.3495 -1.2957 0.0027 38 1 6.0762 -3.3942 0.0043 39 1 5.9548 -4.9405 1.0151 40 1 5.1221 -3.8089 2.1246 41 1 2.9360 -5.5791 3.5543 42 1 1.6547 -4.4463 6.4182 43 1 3.4842 -7.6369 2.2587 44 1 4.8721 -7.5418 1.1256 45 1 4.3572 -6.7389 -1.0397 46 1 2.9099 -7.7095 -0.6772 47 1 2.7374 -6.0786 -1.3691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989022136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:14 Heat of formation + Delta-G solvation = 15.781544 kcal Electronic energy + Delta-G solvation = -29858.936517 eV Core-core repulsion = 26005.853085 eV Total energy + Delta-G solvation = -3853.083432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.07084 -40.93407 -38.71094 -38.11035 -35.80673 -34.56541 -33.27682 -33.02139 -32.76718 -30.81912 -30.12872 -28.87671 -26.82667 -25.80415 -25.05381 -24.77877 -23.43105 -22.64492 -21.44320 -20.13215 -19.34828 -19.15744 -18.34884 -17.67204 -17.35777 -16.98506 -16.37101 -16.04600 -15.77451 -15.68438 -15.41608 -15.27239 -14.93951 -14.78329 -14.51989 -14.36458 -13.97611 -13.91454 -13.77742 -13.55250 -13.25833 -13.16164 -13.11958 -12.95940 -12.91688 -12.70636 -12.39097 -12.28803 -12.23678 -12.16321 -12.04310 -11.65257 -11.51389 -11.48135 -11.10195 -10.92576 -10.25447 -9.68979 -9.64691 -9.25067 -8.97603 -7.95259 -5.24771 -0.76983 -0.18441 0.79031 1.44900 1.46027 1.55970 1.74159 1.93408 2.22062 2.54423 3.09545 3.21395 3.35234 3.42566 3.66428 3.73710 3.80125 3.88681 3.93213 3.95823 4.00784 4.10156 4.19301 4.33479 4.36258 4.42843 4.46035 4.59505 4.65076 4.68428 4.71001 4.73240 4.76229 4.92777 4.93373 4.98845 5.04083 5.09554 5.12023 5.16651 5.21492 5.23524 5.34607 5.35094 5.52610 5.53841 5.63060 5.85700 6.25168 6.59828 7.06298 7.24585 7.30808 8.06350 8.28653 9.28830 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008541 B = 0.004438 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.581065 B = 6307.310566 C = 7487.373809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.137 3.863 3 C -0.178 4.178 4 C -0.045 4.045 5 C -0.137 4.137 6 C -0.060 4.060 7 C -0.130 4.130 8 C -0.052 4.052 9 C -0.149 4.149 10 C 0.568 3.432 11 O -0.568 6.568 12 N -0.600 5.600 13 C 0.078 3.922 14 C 0.155 3.845 15 H 0.096 0.904 16 N -0.727 5.727 17 C -0.233 4.233 18 H 0.089 0.911 19 C -0.081 4.081 20 N -0.975 5.975 21 Si 0.971 3.029 22 H -0.255 1.255 23 H -0.303 1.303 24 H -0.295 1.295 25 C -0.121 4.121 26 C 0.133 3.867 27 H 0.029 0.971 28 C -0.144 4.144 29 C 0.133 3.867 30 N -0.516 5.516 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.109 0.891 34 H 0.177 0.823 35 H 0.189 0.811 36 H 0.179 0.821 37 H 0.177 0.823 38 H 0.154 0.846 39 H 0.104 0.896 40 H 0.053 0.947 41 H 0.367 0.633 42 H 0.247 0.753 43 H 0.073 0.927 44 H 0.119 0.881 45 H 0.076 0.924 46 H 0.084 0.916 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.798 10.280 -15.307 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.014 4.014 3 C -0.197 4.197 4 C -0.071 4.071 5 C -0.139 4.139 6 C -0.078 4.078 7 C -0.147 4.147 8 C -0.072 4.072 9 C -0.152 4.152 10 C 0.358 3.642 11 O -0.448 6.448 12 N -0.332 5.332 13 C -0.047 4.047 14 C 0.045 3.955 15 H 0.114 0.886 16 N -0.365 5.365 17 C -0.365 4.365 18 H 0.107 0.893 19 C -0.273 4.273 20 N -0.626 5.626 21 Si 0.800 3.200 22 H -0.179 1.179 23 H -0.231 1.231 24 H -0.222 1.222 25 C -0.159 4.159 26 C 0.030 3.970 27 H 0.048 0.952 28 C -0.202 4.202 29 C 0.011 3.989 30 N -0.226 5.226 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.194 0.806 35 H 0.206 0.794 36 H 0.196 0.804 37 H 0.194 0.806 38 H 0.171 0.829 39 H 0.121 0.879 40 H 0.072 0.928 41 H 0.197 0.803 42 H 0.056 0.944 43 H 0.092 0.908 44 H 0.137 0.863 45 H 0.095 0.905 46 H 0.102 0.898 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 9.977 9.451 -15.530 20.737 hybrid contribution -0.781 0.793 1.110 1.572 sum 9.196 10.244 -14.420 19.936 Atomic orbital electron populations 1.20853 0.87612 1.03774 1.03909 1.22234 0.98641 0.88738 0.91826 1.22106 0.95798 0.99248 1.02587 1.22008 0.94519 0.97682 0.92847 1.19196 0.96381 0.93603 1.04738 1.21664 0.91342 1.00589 0.94208 1.21300 1.02425 0.90783 1.00189 1.21902 0.90958 1.01514 0.92861 1.19885 0.95026 0.91403 1.08917 1.18051 0.84149 0.83033 0.78956 1.90697 1.24466 1.83519 1.46076 1.48415 1.30295 1.09624 1.44912 1.23491 0.87598 1.01675 0.91959 1.21762 0.94675 0.91899 0.87148 0.88615 1.42581 1.04943 1.75584 1.13373 1.19768 0.92580 1.32209 0.91907 0.89295 1.25621 0.95569 1.03789 1.02327 1.69875 1.02788 1.55913 1.34039 0.85100 0.78514 0.76673 0.79690 1.17878 1.23079 1.22239 1.23012 0.99782 0.96844 0.96278 1.21531 0.96272 0.81859 0.97307 0.95245 1.22002 1.02804 1.00948 0.94478 1.18933 0.89481 0.93018 0.97512 1.67925 1.09571 1.30772 1.14287 0.89002 0.93209 0.87267 0.80550 0.79421 0.80361 0.80565 0.82863 0.87859 0.92804 0.80267 0.94425 0.90791 0.86263 0.90498 0.89759 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.67 10.15 71.24 0.72 -1.95 16 2 C 0.14 4.34 6.78 42.89 0.29 4.64 16 3 C -0.18 -3.93 9.64 22.13 0.21 -3.71 16 4 C -0.05 -0.91 9.89 22.52 0.22 -0.69 16 5 C -0.14 -3.69 5.74 -21.29 -0.12 -3.81 16 6 C -0.06 -1.12 9.75 22.37 0.22 -0.90 16 7 C -0.13 -2.44 9.93 21.98 0.22 -2.22 16 8 C -0.05 -1.38 8.14 22.54 0.18 -1.20 16 9 C -0.15 -5.55 5.44 -19.86 -0.11 -5.65 16 10 C 0.57 24.55 7.10 86.67 0.62 25.16 16 11 O -0.57 -28.69 15.27 -4.02 -0.06 -28.75 16 12 N -0.60 -22.81 3.06 -791.44 -2.42 -25.23 16 13 C 0.08 2.57 4.92 86.94 0.43 3.00 16 14 C 0.16 5.61 3.72 46.46 0.17 5.78 16 15 H 0.10 3.08 8.09 -2.39 -0.02 3.06 16 16 N -0.73 -36.36 5.25 -316.01 -1.66 -38.01 16 17 C -0.23 -12.62 9.96 84.03 0.84 -11.78 16 18 H 0.09 4.43 7.83 -2.91 -0.02 4.41 16 19 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 20 N -0.98 -62.28 13.06 21.65 0.28 -62.00 16 21 Si 0.97 46.41 29.55 68.60 2.03 48.43 16 22 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 25 C -0.12 -3.65 6.07 31.78 0.19 -3.46 16 26 C 0.13 4.75 3.43 45.35 0.16 4.90 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 C -0.14 -4.20 9.11 71.99 0.66 -3.54 16 29 C 0.13 5.03 6.58 40.61 0.27 5.30 16 30 N -0.52 -21.43 8.93 -176.10 -1.57 -23.00 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.11 1.94 8.07 -2.38 -0.02 1.92 16 34 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 35 H 0.19 1.81 8.06 -2.91 -0.02 1.78 16 36 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.15 3.33 5.74 -2.91 -0.02 3.31 16 39 H 0.10 2.42 6.93 -2.39 -0.02 2.40 16 40 H 0.05 2.07 7.26 -2.39 -0.02 2.06 16 41 H 0.37 20.98 7.86 -92.71 -0.73 20.25 16 42 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 43 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 44 H 0.12 2.58 7.85 -2.39 -0.02 2.56 16 45 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.03 1.24 7.06 -2.39 -0.02 1.22 16 Total: -1.00 -89.10 384.38 2.49 -86.61 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: 0.26 Total: 36.36 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 5.63 Total: 5.59 kcal Atomic # 7 Polarization: -142.88 SS G_CDS: -5.37 Total: -148.25 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.06 Total: -28.75 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.43 kcal Total: -89.10 2.49 -86.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989022136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.394 kcal (2) G-P(sol) polarization free energy of solvation -89.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds