Wall clock time and date at job start Tue Mar 31 2020 22:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36536 * 120.87747 * 2 1 4 4 C 1.40245 * 119.82096 * 179.97438 * 3 2 1 5 5 C 1.48273 * 119.23867 * 179.72152 * 4 3 2 6 6 O 1.21504 * 120.00302 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99724 * 179.97438 * 5 4 3 8 8 C 1.47422 * 125.64890 * 0.02562 * 7 5 4 9 9 C 1.54910 * 104.82892 * 204.09178 * 8 7 5 10 10 H 1.08995 * 111.00867 * 81.07043 * 9 8 7 11 11 N 1.46502 * 111.00073 * 204.91856 * 9 8 7 12 12 C 1.36940 * 119.99948 * 273.54377 * 11 9 8 13 13 H 1.08007 * 119.99733 * 0.02562 * 12 11 9 14 14 C 1.38816 * 120.00324 * 180.02562 * 12 11 9 15 15 N 1.31611 * 119.99697 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99946 * 179.97438 * 14 12 11 17 17 H 1.48508 * 109.46898 * 60.00398 * 16 14 12 18 18 H 1.48498 * 109.46946 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47594 * 300.00243 * 16 14 12 20 20 C 1.55156 * 101.58517 * 322.98779 * 9 8 7 21 21 C 1.47025 * 125.64569 * 179.71543 * 7 5 4 22 22 H 1.08998 * 109.88439 * 59.55805 * 21 7 5 23 23 C 1.52998 * 109.88299 * 298.39372 * 21 7 5 24 24 N 1.31896 * 121.51678 * 359.97438 * 4 3 2 25 25 C 1.33238 * 121.29987 * 0.02562 * 24 4 3 26 26 C 1.40835 * 120.98451 * 179.97438 * 25 24 4 27 27 C 1.35990 * 119.73764 * 179.97438 * 26 25 24 28 28 C 1.39443 * 121.08695 * 359.97438 * 27 26 25 29 29 C 1.36137 * 120.91726 * 0.02562 * 28 27 26 30 30 C 1.40422 * 119.65420 * 359.97438 * 29 28 27 31 31 H 1.08994 * 109.47031 * 90.00017 * 1 2 3 32 32 H 1.08997 * 109.46985 * 209.99966 * 1 2 3 33 33 H 1.08999 * 109.47407 * 329.99756 * 1 2 3 34 34 H 1.07999 * 120.08991 * 359.96106 * 3 2 1 35 35 H 1.08996 * 110.36609 * 322.92726 * 8 7 5 36 36 H 1.08997 * 110.36465 * 85.14686 * 8 7 5 37 37 H 0.97000 * 120.00645 * 93.55023 * 11 9 8 38 38 H 0.96997 * 119.99881 * 180.02562 * 15 14 12 39 39 H 1.08992 * 110.72029 * 153.86570 * 20 9 8 40 40 H 1.08997 * 110.72388 * 276.96729 * 20 9 8 41 41 H 1.09006 * 109.47051 * 61.45652 * 23 21 7 42 42 H 1.09001 * 109.47267 * 181.45182 * 23 21 7 43 43 H 1.08995 * 109.47435 * 301.45680 * 23 21 7 44 44 H 1.08003 * 120.12991 * 0.02562 * 26 25 24 45 45 H 1.07995 * 119.45496 * 179.97438 * 27 26 25 46 46 H 1.07993 * 119.54175 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.17115 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2077 1.1718 0.0000 4 6 3.6099 1.1460 0.0005 5 6 4.3579 2.4262 -0.0058 6 8 3.7559 3.4816 -0.0118 7 7 5.7057 2.4192 -0.0048 8 6 6.5586 1.2168 0.0016 9 6 7.9026 1.6874 0.6116 10 1 7.8481 1.7191 1.6997 11 7 9.0078 0.8341 0.1680 12 6 9.3033 -0.3145 0.8525 13 1 8.7213 -0.5916 1.7191 14 6 10.3509 -1.1228 0.4326 15 7 11.0604 -0.7849 -0.6232 16 14 10.7543 -2.6893 1.3668 17 1 9.5756 -3.5926 1.3509 18 1 11.9070 -3.3675 0.7214 19 1 11.1013 -2.3530 2.7709 20 6 8.0305 3.1157 0.0191 21 6 6.5687 3.6095 -0.0165 22 1 6.3653 4.2235 0.8608 23 6 6.3211 4.4193 -1.2907 24 7 4.2785 0.0091 0.0016 25 6 3.6481 -1.1647 0.0016 26 6 4.3687 -2.3747 0.0022 27 6 3.6994 -3.5585 0.0027 28 6 2.3055 -3.5974 0.0033 29 6 1.5737 -2.4495 0.0028 30 6 2.2292 -1.2077 0.0022 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 1.6836 2.1161 -0.0006 35 1 6.1127 0.4387 0.6211 36 1 6.7083 0.8525 -1.0147 37 1 9.5304 1.0828 -0.6105 38 1 11.7921 -1.3498 -0.9168 39 1 8.6381 3.7485 0.6660 40 1 8.4491 3.0800 -0.9866 41 1 5.2837 4.7534 -1.3130 42 1 6.9822 5.2858 -1.3048 43 1 6.5207 3.7957 -2.1621 44 1 5.4487 -2.3626 0.0030 45 1 4.2565 -4.4836 0.0027 46 1 1.7995 -4.5515 0.0042 47 1 0.4946 -2.4937 0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989043054.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:27 Heat of formation + Delta-G solvation = 42.461603 kcal Electronic energy + Delta-G solvation = -29454.262474 eV Core-core repulsion = 25602.335976 eV Total energy + Delta-G solvation = -3851.926498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.19560 -39.71759 -37.58995 -36.78635 -34.95791 -34.13891 -31.77897 -31.32336 -30.55578 -30.36962 -28.34856 -28.00359 -25.44293 -25.01236 -23.76911 -23.62687 -21.91726 -21.10600 -20.19654 -19.16288 -18.07926 -17.72818 -17.18334 -16.62114 -16.14443 -15.51000 -15.18979 -14.91119 -14.68491 -14.39537 -14.18937 -13.91831 -13.64095 -13.52396 -13.31738 -13.18303 -13.16001 -13.01654 -12.54523 -12.37777 -12.24070 -12.11704 -11.73784 -11.73112 -11.64294 -11.51472 -11.08329 -10.96643 -10.74235 -10.61145 -10.33828 -10.26615 -9.99385 -9.96015 -9.72512 -9.32539 -8.91051 -8.86974 -8.32746 -8.24159 -7.02102 -5.80550 -3.10279 0.12797 0.58923 1.83990 2.40053 3.11925 3.30190 3.41420 3.46576 3.47239 4.03593 4.05787 4.32696 4.45901 4.56351 4.60054 4.69735 4.92598 4.99059 5.05196 5.13948 5.22050 5.24990 5.28319 5.29672 5.33238 5.50767 5.54180 5.64545 5.69994 5.81452 5.81853 5.85317 5.91247 5.92901 5.96342 6.18659 6.23519 6.25410 6.29982 6.35822 6.40203 6.43165 6.57034 6.65865 6.68576 6.91616 6.97862 7.67259 7.67620 7.83542 8.33389 8.37938 9.48989 10.03795 10.39179 11.41726 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008637 B = 0.004450 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.220544 B = 6290.147308 C = 9263.628224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.036 4.036 3 C -0.129 4.129 4 C 0.123 3.877 5 C 0.577 3.423 6 O -0.547 6.547 7 N -0.585 5.585 8 C 0.079 3.921 9 C 0.167 3.833 10 H 0.062 0.938 11 N -0.711 5.711 12 C -0.242 4.242 13 H 0.071 0.929 14 C -0.009 4.009 15 N -0.931 5.931 16 Si 0.906 3.094 17 H -0.285 1.285 18 H -0.291 1.291 19 H -0.286 1.286 20 C -0.137 4.137 21 C 0.137 3.863 22 H 0.074 0.926 23 C -0.160 4.160 24 N -0.427 5.427 25 C 0.124 3.876 26 C -0.076 4.076 27 C -0.109 4.109 28 C -0.106 4.106 29 C -0.109 4.109 30 C -0.087 4.087 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.147 0.853 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.387 0.613 38 H 0.256 0.744 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.146 0.854 45 H 0.132 0.868 46 H 0.127 0.873 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.223 0.125 0.135 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.044 4.044 3 C -0.149 4.149 4 C -0.031 4.031 5 C 0.364 3.636 6 O -0.426 6.426 7 N -0.316 5.316 8 C -0.046 4.046 9 C 0.055 3.945 10 H 0.080 0.920 11 N -0.351 5.351 12 C -0.373 4.373 13 H 0.089 0.911 14 C -0.205 4.205 15 N -0.579 5.579 16 Si 0.737 3.263 17 H -0.212 1.212 18 H -0.217 1.217 19 H -0.212 1.212 20 C -0.175 4.175 21 C 0.033 3.967 22 H 0.092 0.908 23 C -0.218 4.218 24 N -0.138 5.138 25 C 0.001 3.999 26 C -0.095 4.095 27 C -0.129 4.129 28 C -0.124 4.124 29 C -0.128 4.128 30 C -0.089 4.089 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.221 0.779 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.164 0.836 45 H 0.150 0.850 46 H 0.145 0.855 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -19.599 0.465 0.245 19.606 hybrid contribution -0.363 -0.970 0.124 1.043 sum -19.962 -0.505 0.369 19.972 Atomic orbital electron populations 1.20842 0.89661 1.03601 1.03138 1.20081 0.96727 0.91715 0.95902 1.21553 0.93566 0.99474 1.00356 1.21306 0.91420 0.92326 0.98006 1.17555 0.81100 0.87224 0.77728 1.90724 1.68254 1.31242 1.52333 1.48512 1.04142 1.09992 1.68941 1.23790 0.91514 0.86737 1.02567 1.21392 0.87693 0.88534 0.96854 0.92042 1.42274 1.33802 1.24501 1.34573 1.19196 1.11714 0.98320 1.08108 0.91089 1.24728 0.98475 0.99196 0.98122 1.69644 1.22714 1.39337 1.26211 0.86292 0.77560 0.83356 0.79110 1.21185 1.21716 1.21242 1.23007 0.93493 0.98418 1.02618 1.21590 0.89990 0.86701 0.98391 0.90806 1.22126 1.02640 0.99840 0.97238 1.68322 1.38556 0.97292 1.09669 1.18996 0.89629 0.92380 0.98893 1.21097 1.01372 0.89844 0.97142 1.20965 0.94332 0.98316 0.99270 1.20996 0.94208 0.98448 0.98759 1.20966 0.99931 0.91168 1.00719 1.18838 0.93987 0.94259 1.01787 0.90198 0.90731 0.90528 0.83492 0.88355 0.91475 0.77909 0.93388 0.90344 0.90372 0.91591 0.91775 0.92495 0.83604 0.85013 0.85541 0.85188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 9.59 36.01 0.35 -0.50 16 2 C -0.04 -0.41 5.92 -104.30 -0.62 -1.03 16 3 C -0.13 -1.73 9.23 -39.44 -0.36 -2.09 16 4 C 0.12 1.99 6.73 -82.96 -0.56 1.43 16 5 C 0.58 10.12 7.63 -12.13 -0.09 10.03 16 6 O -0.55 -10.18 15.33 5.36 0.08 -10.10 16 7 N -0.58 -10.12 3.06 -163.95 -0.50 -10.62 16 8 C 0.08 1.49 5.61 -2.53 -0.01 1.47 16 9 C 0.17 3.28 3.69 -65.78 -0.24 3.04 16 10 H 0.06 1.24 8.13 -51.93 -0.42 0.82 16 11 N -0.71 -17.13 5.28 -51.35 -0.27 -17.41 16 12 C -0.24 -6.46 9.98 -15.06 -0.15 -6.61 16 13 H 0.07 1.85 7.83 -52.48 -0.41 1.43 16 14 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 15 N -0.93 -27.28 13.06 55.49 0.72 -26.55 16 16 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 C -0.14 -2.22 6.11 -24.89 -0.15 -2.38 16 21 C 0.14 2.13 3.46 -66.95 -0.23 1.90 16 22 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 23 C -0.16 -2.28 9.11 37.16 0.34 -1.94 16 24 N -0.43 -7.13 6.51 -7.54 -0.05 -7.17 16 25 C 0.12 1.86 6.61 -84.85 -0.56 1.30 16 26 C -0.08 -1.05 9.99 -39.41 -0.39 -1.44 16 27 C -0.11 -1.18 9.94 -39.94 -0.40 -1.58 16 28 C -0.11 -0.98 9.96 -39.89 -0.40 -1.38 16 29 C -0.11 -1.07 9.31 -39.51 -0.37 -1.43 16 30 C -0.09 -1.08 5.75 -106.72 -0.61 -1.70 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.44 6.51 -51.93 -0.34 0.10 16 33 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 34 H 0.15 1.80 7.60 -52.49 -0.40 1.40 16 35 H 0.10 1.93 5.88 -51.93 -0.31 1.62 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.39 9.89 7.71 -40.82 -0.31 9.57 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.29 7.70 -51.93 -0.40 0.89 16 41 H 0.07 1.01 6.89 -51.93 -0.36 0.65 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.15 2.14 8.06 -52.48 -0.42 1.72 16 45 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 47 H 0.13 0.89 6.43 -52.49 -0.34 0.56 16 LS Contribution 382.32 15.07 5.76 5.76 Total: -1.00 -31.34 382.32 -10.49 -41.83 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.65 Total: 10.83 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -4.56 Total: -3.27 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.10 Total: -61.75 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.08 Total: -10.10 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.34 -10.49 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989043054.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.287 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds