Wall clock time and date at job start Tue Mar 31 2020 22:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36535 * 120.87760 * 2 1 4 4 C 1.40238 * 119.81396 * 180.26015 * 3 2 1 5 5 C 1.48266 * 119.23920 * 179.74262 * 4 3 2 6 6 O 1.21499 * 120.00355 * 359.73503 * 5 4 3 7 7 N 1.34785 * 120.00138 * 179.73434 * 5 4 3 8 8 C 1.47019 * 125.64722 * 0.05500 * 7 5 4 9 9 C 1.54319 * 107.27192 * 181.01358 * 8 7 5 10 10 H 1.09001 * 110.87221 * 263.76236 * 9 8 7 11 11 N 1.46499 * 110.72186 * 140.55210 * 9 8 7 12 12 C 1.36932 * 119.99549 * 91.47934 * 11 9 8 13 13 H 1.08003 * 120.00354 * 0.02562 * 12 11 9 14 14 C 1.38817 * 120.00011 * 179.97438 * 12 11 9 15 15 N 1.31619 * 120.00154 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99635 * 0.02562 * 14 12 11 17 17 H 1.48506 * 109.47297 * 269.99668 * 16 14 12 18 18 H 1.48503 * 109.47261 * 149.99848 * 16 14 12 19 19 H 1.48500 * 109.47454 * 29.99841 * 16 14 12 20 20 C 1.55161 * 102.94260 * 22.19190 * 9 8 7 21 21 C 1.47423 * 125.64591 * 179.97438 * 7 5 4 22 22 H 1.08994 * 110.46305 * 274.80119 * 21 7 5 23 23 C 1.53006 * 110.36893 * 37.08440 * 21 7 5 24 24 N 1.31912 * 121.52476 * 359.47002 * 4 3 2 25 25 C 1.33247 * 121.29460 * 0.27582 * 24 4 3 26 26 C 1.40829 * 120.99820 * 179.97438 * 25 24 4 27 27 C 1.35989 * 119.74021 * 180.02562 * 26 25 24 28 28 C 1.39448 * 121.08848 * 359.95687 * 27 26 25 29 29 C 1.36132 * 120.91333 * 0.02562 * 28 27 26 30 30 C 1.40421 * 119.65071 * 0.02562 * 29 28 27 31 31 H 1.08997 * 109.47124 * 270.23445 * 1 2 3 32 32 H 1.08999 * 109.46965 * 30.23573 * 1 2 3 33 33 H 1.09005 * 109.47063 * 150.23756 * 1 2 3 34 34 H 1.08003 * 120.09516 * 0.03389 * 3 2 1 35 35 H 1.08999 * 109.88441 * 61.59547 * 8 7 5 36 36 H 1.09004 * 109.88223 * 300.42964 * 8 7 5 37 37 H 0.96993 * 120.00302 * 271.47898 * 11 9 8 38 38 H 0.96998 * 119.99442 * 179.97438 * 15 14 12 39 39 H 1.09001 * 111.00676 * 82.57089 * 20 9 8 40 40 H 1.08999 * 111.00623 * 206.38628 * 20 9 8 41 41 H 1.08993 * 109.47142 * 175.40628 * 23 21 7 42 42 H 1.09000 * 109.46379 * 295.40845 * 23 21 7 43 43 H 1.09002 * 109.47016 * 55.40056 * 23 21 7 44 44 H 1.08006 * 120.13376 * 0.02562 * 26 25 24 45 45 H 1.08003 * 119.45943 * 180.02562 * 27 26 25 46 46 H 1.08001 * 119.54038 * 180.02562 * 28 27 26 47 47 H 1.08004 * 120.16795 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2078 1.1718 0.0000 4 6 3.6099 1.1458 -0.0055 5 6 4.3580 2.4259 -0.0113 6 8 3.7561 3.4813 -0.0160 7 7 5.7058 2.4188 -0.0112 8 6 6.5563 1.2196 -0.0069 9 6 8.0232 1.6984 0.0175 10 1 8.4413 1.7204 -0.9889 11 7 8.8316 0.8475 0.8942 12 6 9.4811 -0.2431 0.3807 13 1 9.3977 -0.4759 -0.6707 14 6 10.2476 -1.0492 1.2112 15 7 10.8723 -2.0972 0.7176 16 14 10.3925 -0.6462 3.0295 17 1 11.5532 0.2544 3.2460 18 1 10.5884 -1.9003 3.8003 19 1 9.1509 0.0275 3.4877 20 6 7.9108 3.1334 0.5967 21 6 6.5712 3.6123 -0.0171 22 1 6.7257 3.9659 -1.0364 23 6 5.9575 4.7194 0.8423 24 7 4.2787 0.0088 -0.0004 25 6 3.6481 -1.1650 0.0048 26 6 4.3684 -2.3752 0.0098 27 6 3.6987 -3.5588 0.0145 28 6 2.3048 -3.5974 0.0154 29 6 1.5733 -2.4493 0.0111 30 6 2.2292 -1.2077 0.0051 31 1 -0.3633 0.0042 1.0276 32 1 -0.3633 0.8879 -0.5175 33 1 -0.3633 -0.8921 -0.5102 34 1 1.6837 2.1162 0.0006 35 1 6.3731 0.6320 -0.9065 36 1 6.3473 0.6200 0.8790 37 1 8.9069 1.0567 1.8383 38 1 11.4082 -2.6601 1.2979 39 1 7.8567 3.1124 1.6852 40 1 8.7398 3.7564 0.2608 41 1 6.6458 5.5629 0.8942 42 1 5.0168 5.0448 0.3980 43 1 5.7723 4.3391 1.8469 44 1 5.4484 -2.3634 0.0098 45 1 4.2556 -4.4842 0.0187 46 1 1.7985 -4.5514 0.0197 47 1 0.4942 -2.4933 0.0115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989043055.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:31 Heat of formation + Delta-G solvation = 28.041553 kcal Electronic energy + Delta-G solvation = -29522.810986 eV Core-core repulsion = 25670.259188 eV Total energy + Delta-G solvation = -3852.551798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.23880 -41.06555 -38.96122 -37.87439 -36.14623 -35.81182 -33.54309 -33.01897 -31.55289 -31.29145 -30.55139 -28.77951 -26.78486 -26.21215 -25.32552 -24.58204 -23.11253 -22.17236 -21.92452 -20.42918 -19.70465 -19.05299 -18.65481 -17.69852 -17.66884 -16.89621 -16.47496 -16.28263 -15.93385 -15.67419 -15.41121 -15.15979 -15.03730 -14.89537 -14.59651 -14.44610 -14.31041 -13.96401 -13.94621 -13.64644 -13.52138 -13.18974 -13.03979 -12.99475 -12.90385 -12.71646 -12.64832 -12.37180 -12.31777 -12.18958 -12.00619 -11.83545 -11.59632 -11.21058 -11.09023 -11.06075 -10.41631 -9.93530 -9.64685 -9.35316 -9.24207 -8.01976 -5.36551 -0.86022 -0.38224 0.88862 1.31577 1.38146 1.40104 1.46664 1.81280 2.17726 2.47733 2.86848 3.03923 3.26577 3.36003 3.48597 3.59404 3.70960 3.75658 3.81075 3.86478 4.10838 4.11626 4.18447 4.29023 4.29948 4.41516 4.43818 4.46539 4.49520 4.64494 4.73611 4.76714 4.82715 4.93978 4.97484 5.00410 5.09761 5.10950 5.11495 5.16312 5.21962 5.28571 5.38938 5.42714 5.50411 5.53341 5.76861 5.84575 6.21284 6.36756 6.60984 7.01480 7.06289 7.79933 7.99565 9.19127 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009143 B = 0.004399 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.723738 B = 6363.434129 C = 8921.914538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.021 4.021 3 C -0.145 4.145 4 C 0.095 3.905 5 C 0.576 3.424 6 O -0.554 6.554 7 N -0.591 5.591 8 C 0.116 3.884 9 C 0.163 3.837 10 H 0.071 0.929 11 N -0.737 5.737 12 C -0.230 4.230 13 H 0.060 0.940 14 C -0.055 4.055 15 N -0.980 5.980 16 Si 0.949 3.051 17 H -0.275 1.275 18 H -0.297 1.297 19 H -0.259 1.259 20 C -0.126 4.126 21 C 0.131 3.869 22 H 0.091 0.909 23 C -0.150 4.150 24 N -0.462 5.462 25 C 0.098 3.902 26 C -0.116 4.116 27 C -0.095 4.095 28 C -0.101 4.101 29 C -0.099 4.099 30 C -0.100 4.100 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.156 0.844 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.367 0.633 38 H 0.258 0.742 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.116 0.884 45 H 0.151 0.849 46 H 0.169 0.831 47 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.522 3.758 -0.661 23.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.029 4.029 3 C -0.166 4.166 4 C -0.058 4.058 5 C 0.364 3.636 6 O -0.434 6.434 7 N -0.323 5.323 8 C -0.010 4.010 9 C 0.053 3.947 10 H 0.089 0.911 11 N -0.379 5.379 12 C -0.361 4.361 13 H 0.078 0.922 14 C -0.246 4.246 15 N -0.630 5.630 16 Si 0.776 3.224 17 H -0.201 1.201 18 H -0.224 1.224 19 H -0.184 1.184 20 C -0.165 4.165 21 C 0.029 3.971 22 H 0.109 0.891 23 C -0.208 4.208 24 N -0.175 5.175 25 C -0.025 4.025 26 C -0.135 4.135 27 C -0.114 4.114 28 C -0.119 4.119 29 C -0.117 4.117 30 C -0.102 4.102 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.173 0.827 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.200 0.800 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.126 0.874 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.134 0.866 45 H 0.168 0.832 46 H 0.186 0.814 47 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -22.861 4.106 -0.819 23.241 hybrid contribution 0.225 -0.324 0.967 1.044 sum -22.635 3.783 0.148 22.950 Atomic orbital electron populations 1.20998 0.86052 1.05321 1.04649 1.20572 0.98954 0.90402 0.92992 1.21663 0.92473 1.00777 1.01711 1.21344 0.92661 0.91745 1.00011 1.17839 0.81022 0.87773 0.77002 1.90665 1.68342 1.31455 1.52897 1.48530 1.04431 1.09709 1.69615 1.22770 0.90893 0.86134 1.01235 1.21448 0.88449 0.89890 0.94907 0.91060 1.42638 1.57401 1.30453 1.07436 1.19019 1.20975 1.01619 0.94479 0.92161 1.25378 0.99891 0.97306 1.02065 1.69869 1.37539 1.19107 1.36451 0.85514 0.78640 0.77036 0.81177 1.20064 1.22412 1.18425 1.23150 0.96717 0.95662 1.00966 1.22138 0.88825 0.85502 1.00638 0.89123 1.22037 1.02256 0.97776 0.98685 1.68158 1.40313 0.98108 1.10899 1.19250 0.91371 0.91844 1.00019 1.21020 1.00311 0.91269 1.00856 1.21312 0.95771 0.97726 0.96633 1.21453 0.93126 1.00286 0.97018 1.21437 1.01891 0.89781 0.98571 1.19150 0.92927 0.96236 1.01855 0.88486 0.89383 0.88488 0.82668 0.92883 0.92507 0.79958 0.93335 0.90718 0.87367 0.89290 0.91230 0.93860 0.86632 0.83150 0.81387 0.81145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.59 71.24 0.68 -0.54 16 2 C -0.02 -0.45 5.92 -19.65 -0.12 -0.56 16 3 C -0.15 -3.86 9.23 22.36 0.21 -3.65 16 4 C 0.09 3.18 6.72 42.29 0.28 3.46 16 5 C 0.58 20.24 7.62 86.91 0.66 20.91 16 6 O -0.55 -19.94 14.00 -3.71 -0.05 -19.99 16 7 N -0.59 -20.27 3.24 -791.01 -2.56 -22.83 16 8 C 0.12 4.43 5.14 86.73 0.45 4.88 16 9 C 0.16 6.19 3.61 46.18 0.17 6.35 16 10 H 0.07 2.76 8.09 -2.39 -0.02 2.75 16 11 N -0.74 -33.98 4.95 -317.33 -1.57 -35.55 16 12 C -0.23 -12.89 10.44 84.04 0.88 -12.01 16 13 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 14 C -0.05 -3.17 5.50 84.86 0.47 -2.71 16 15 N -0.98 -61.96 13.97 21.65 0.30 -61.66 16 16 Si 0.95 45.33 27.73 68.60 1.90 47.23 16 17 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 19 H -0.26 -11.47 6.52 99.48 0.65 -10.82 16 20 C -0.13 -3.70 6.13 32.00 0.20 -3.50 16 21 C 0.13 3.75 3.77 45.48 0.17 3.92 16 22 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 23 C -0.15 -3.88 8.59 71.98 0.62 -3.26 16 24 N -0.46 -16.60 6.76 -177.78 -1.20 -17.80 16 25 C 0.10 3.12 6.61 40.48 0.27 3.39 16 26 C -0.12 -3.50 9.99 22.38 0.22 -3.28 16 27 C -0.09 -2.04 9.94 22.04 0.22 -1.82 16 28 C -0.10 -1.57 9.96 22.07 0.22 -1.35 16 29 C -0.10 -1.59 9.31 22.31 0.21 -1.39 16 30 C -0.10 -2.39 5.75 -21.22 -0.12 -2.52 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.79 8.10 -2.39 -0.02 0.77 16 33 H 0.10 0.63 6.51 -2.38 -0.02 0.62 16 34 H 0.16 3.69 7.60 -2.91 -0.02 3.67 16 35 H 0.05 2.18 7.53 -2.39 -0.02 2.16 16 36 H 0.06 2.45 7.29 -2.39 -0.02 2.43 16 37 H 0.37 16.38 5.62 -92.71 -0.52 15.86 16 38 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 39 H 0.07 2.21 7.93 -2.39 -0.02 2.19 16 40 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.07 2.01 6.09 -2.39 -0.01 1.99 16 43 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 45 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 46 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 47 H 0.17 1.36 6.43 -2.91 -0.02 1.34 16 Total: -1.00 -74.91 377.64 2.91 -72.00 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.42 Total: 32.28 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 5.68 Total: 6.33 kcal Atomic # 7 Polarization: -132.81 SS G_CDS: -5.04 Total: -137.84 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.05 Total: -19.99 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.23 kcal Total: -74.91 2.91 -72.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989043055.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.042 kcal (2) G-P(sol) polarization free energy of solvation -74.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds