Wall clock time and date at job start Tue Mar 31 2020 22:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36535 * 120.88383 * 2 1 4 4 C 1.40238 * 119.81626 * 180.02562 * 3 2 1 5 5 C 1.48268 * 119.23733 * 179.97438 * 4 3 2 6 6 O 1.21503 * 119.99990 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00395 * 180.02562 * 5 4 3 8 8 C 1.47422 * 125.64361 * 359.94872 * 7 5 4 9 9 C 1.54906 * 104.83284 * 204.17309 * 8 7 5 10 10 H 1.09000 * 111.03945 * 204.89940 * 9 8 7 11 11 N 1.46504 * 111.00538 * 81.06220 * 9 8 7 12 12 C 1.36943 * 119.99781 * 92.80655 * 11 9 8 13 13 H 1.08002 * 119.99788 * 359.97438 * 12 11 9 14 14 C 1.38811 * 119.99622 * 180.27904 * 12 11 9 15 15 N 1.31614 * 120.00467 * 359.72375 * 14 12 11 16 16 Si 1.86801 * 119.99700 * 179.72266 * 14 12 11 17 17 H 1.48504 * 109.47306 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47021 * 119.99661 * 16 14 12 19 19 H 1.48501 * 109.47039 * 240.00078 * 16 14 12 20 20 C 1.55153 * 101.58297 * 322.99022 * 9 8 7 21 21 C 1.47023 * 125.65309 * 180.02562 * 7 5 4 22 22 H 1.08997 * 109.88266 * 59.47387 * 21 7 5 23 23 C 1.53003 * 109.87964 * 298.31322 * 21 7 5 24 24 N 1.31906 * 121.52432 * 0.27441 * 4 3 2 25 25 C 1.33245 * 121.29691 * 359.44111 * 24 4 3 26 26 C 1.40828 * 120.99485 * 180.23389 * 25 24 4 27 27 C 1.35995 * 119.73648 * 180.27202 * 26 25 24 28 28 C 1.39439 * 121.08824 * 0.04833 * 27 26 25 29 29 C 1.36132 * 120.92044 * 359.97092 * 28 27 26 30 30 C 1.40428 * 119.64745 * 0.02562 * 29 28 27 31 31 H 1.09004 * 109.47031 * 90.00255 * 1 2 3 32 32 H 1.08992 * 109.47783 * 210.00228 * 1 2 3 33 33 H 1.08998 * 109.47192 * 330.00756 * 1 2 3 34 34 H 1.07994 * 120.08653 * 0.04111 * 3 2 1 35 35 H 1.09006 * 110.36998 * 85.33360 * 8 7 5 36 36 H 1.09005 * 110.37180 * 323.01170 * 8 7 5 37 37 H 0.97000 * 120.00410 * 272.80980 * 11 9 8 38 38 H 0.96995 * 120.00147 * 180.02562 * 15 14 12 39 39 H 1.09003 * 110.72723 * 153.86049 * 20 9 8 40 40 H 1.09000 * 110.72556 * 277.13946 * 20 9 8 41 41 H 1.09002 * 109.46729 * 302.19093 * 23 21 7 42 42 H 1.08997 * 109.47153 * 62.19314 * 23 21 7 43 43 H 1.08998 * 109.46547 * 182.19329 * 23 21 7 44 44 H 1.08003 * 120.13507 * 0.27781 * 26 25 24 45 45 H 1.07998 * 119.45681 * 180.02562 * 27 26 25 46 46 H 1.08002 * 119.54209 * 179.97438 * 28 27 26 47 47 H 1.08003 * 120.17714 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1718 0.0000 4 6 3.6099 1.1456 -0.0005 5 6 4.3581 2.4257 -0.0011 6 8 3.7562 3.4812 -0.0006 7 7 5.7059 2.4186 -0.0022 8 6 6.5586 1.2161 -0.0018 9 6 7.9029 1.6834 0.6100 10 1 8.7254 1.0502 0.2773 11 7 7.8299 1.7192 2.0727 12 6 8.2209 0.6298 2.8046 13 1 8.5826 -0.2559 2.3034 14 6 8.1464 0.6616 4.1903 15 7 7.7050 1.7406 4.8011 16 14 8.6724 -0.8273 5.1883 17 1 9.1257 -1.9034 4.2707 18 1 9.7857 -0.4475 6.0947 19 1 7.5234 -1.3150 5.9929 20 6 8.0308 3.1145 0.0244 21 6 6.5691 3.6088 -0.0023 22 1 6.3660 4.2141 0.8811 23 6 6.3212 4.4312 -1.2685 24 7 4.2786 0.0086 -0.0064 25 6 3.6480 -1.1652 -0.0010 26 6 4.3683 -2.3754 -0.0025 27 6 3.6985 -3.5590 -0.0025 28 6 2.3047 -3.5975 -0.0021 29 6 1.5731 -2.4495 -0.0011 30 6 2.2291 -1.2078 -0.0010 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5137 34 1 1.6838 2.1160 0.0007 35 1 6.7095 0.8576 -1.0201 36 1 6.1128 0.4350 0.6141 37 1 7.5047 2.5145 2.5229 38 1 7.6533 1.7629 5.7694 39 1 8.6387 3.7443 0.6742 40 1 8.4462 3.0835 -0.9828 41 1 6.5079 3.8122 -2.1460 42 1 5.2875 4.7766 -1.2807 43 1 6.9916 5.2905 -1.2805 44 1 5.4482 -2.3636 -0.0035 45 1 4.2554 -4.4843 -0.0031 46 1 1.7983 -4.5515 -0.0025 47 1 0.4940 -2.4934 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989043057.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:39 Heat of formation + Delta-G solvation = 42.799811 kcal Electronic energy + Delta-G solvation = -29782.328083 eV Core-core repulsion = 25930.416251 eV Total energy + Delta-G solvation = -3851.911832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -41.11066 -39.62627 -37.54715 -36.70265 -34.87932 -33.91349 -31.68197 -31.24858 -30.49484 -30.31610 -28.36479 -27.92375 -25.41286 -24.96229 -23.67428 -23.58950 -22.07679 -21.10165 -19.98510 -19.03719 -18.00234 -17.63917 -17.21908 -16.53213 -16.05158 -15.38307 -15.12170 -14.82116 -14.52694 -14.44707 -14.18555 -13.83139 -13.61714 -13.46441 -13.24626 -13.20313 -13.04299 -12.95149 -12.61120 -12.32516 -12.13437 -11.92979 -11.71657 -11.63497 -11.53945 -11.42893 -11.10079 -10.92551 -10.72267 -10.60133 -10.25672 -10.24918 -9.95093 -9.84576 -9.66764 -9.26503 -8.86701 -8.83192 -8.27197 -8.11544 -6.95915 -5.77060 -3.06213 0.19971 0.66305 1.90172 2.49318 3.26018 3.42099 3.42514 3.47472 3.50228 4.09747 4.16917 4.39404 4.56224 4.58108 4.66619 4.73947 4.99106 5.04184 5.10099 5.21264 5.27421 5.30203 5.33683 5.38323 5.39000 5.58688 5.61115 5.68078 5.74033 5.77351 5.88868 5.91282 5.92769 5.99952 6.00956 6.11819 6.28514 6.32568 6.34098 6.40368 6.43946 6.47734 6.59126 6.72419 6.76816 6.79673 7.11005 7.69977 7.75998 7.97472 8.40493 8.49668 9.52150 10.08721 10.43316 11.45375 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008296 B = 0.004749 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3374.248313 B = 5894.300133 C = 8049.333498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.037 4.037 3 C -0.128 4.128 4 C 0.130 3.870 5 C 0.579 3.421 6 O -0.547 6.547 7 N -0.573 5.573 8 C 0.073 3.927 9 C 0.163 3.837 10 H 0.073 0.927 11 N -0.712 5.712 12 C -0.240 4.240 13 H 0.073 0.927 14 C -0.011 4.011 15 N -0.930 5.930 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.292 1.292 19 H -0.293 1.293 20 C -0.139 4.139 21 C 0.136 3.864 22 H 0.076 0.924 23 C -0.159 4.159 24 N -0.428 5.428 25 C 0.125 3.875 26 C -0.077 4.077 27 C -0.109 4.109 28 C -0.110 4.110 29 C -0.106 4.106 30 C -0.088 4.088 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.148 0.852 35 H 0.052 0.948 36 H 0.110 0.890 37 H 0.385 0.615 38 H 0.254 0.746 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.141 0.859 45 H 0.130 0.870 46 H 0.126 0.874 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.504 -6.437 -14.275 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.045 4.045 3 C -0.148 4.148 4 C -0.023 4.023 5 C 0.365 3.635 6 O -0.426 6.426 7 N -0.303 5.303 8 C -0.053 4.053 9 C 0.051 3.949 10 H 0.091 0.909 11 N -0.351 5.351 12 C -0.371 4.371 13 H 0.090 0.910 14 C -0.207 4.207 15 N -0.578 5.578 16 Si 0.735 3.265 17 H -0.205 1.205 18 H -0.219 1.219 19 H -0.220 1.220 20 C -0.179 4.179 21 C 0.033 3.967 22 H 0.094 0.906 23 C -0.217 4.217 24 N -0.139 5.139 25 C 0.002 3.998 26 C -0.096 4.096 27 C -0.129 4.129 28 C -0.128 4.128 29 C -0.124 4.124 30 C -0.090 4.090 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.070 0.930 36 H 0.128 0.872 37 H 0.219 0.781 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.159 0.841 45 H 0.148 0.852 46 H 0.144 0.856 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -10.866 -6.098 -14.191 18.885 hybrid contribution -0.733 -0.623 0.917 1.329 sum -11.599 -6.721 -13.274 18.865 Atomic orbital electron populations 1.20839 0.89680 1.03683 1.03017 1.20076 0.96724 0.91722 0.95935 1.21568 0.93639 0.99511 1.00095 1.21312 0.91417 0.92346 0.97238 1.17475 0.81117 0.87163 0.77709 1.90721 1.68219 1.31238 1.52397 1.48258 1.04032 1.09390 1.68641 1.23733 0.93200 0.88143 1.00193 1.21445 0.94082 0.93252 0.86141 0.90913 1.42326 1.76960 1.17213 0.98609 1.19277 1.35455 0.93681 0.88652 0.90954 1.24735 1.01971 0.97398 0.96583 1.69673 1.52384 1.27465 1.08267 0.86162 0.77726 0.82224 0.80344 1.20465 1.21876 1.21996 1.23092 0.94188 0.99197 1.01374 1.21569 0.90073 0.86797 0.98296 0.90606 1.22130 1.02753 0.99681 0.97138 1.68280 1.38519 0.97248 1.09895 1.18987 0.89677 0.92432 0.98700 1.20961 1.00887 0.89928 0.97816 1.20914 0.94387 0.98114 0.99504 1.20958 0.94197 0.98403 0.99267 1.20976 0.99944 0.91189 1.00301 1.18832 0.94029 0.94237 1.01906 0.90269 0.90744 0.90479 0.83469 0.92986 0.87175 0.78136 0.93554 0.89815 0.90826 0.92855 0.91602 0.91910 0.84128 0.85187 0.85614 0.85207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.59 36.00 0.35 -0.63 16 2 C -0.04 -0.46 5.92 -104.30 -0.62 -1.08 16 3 C -0.13 -1.91 9.23 -39.45 -0.36 -2.27 16 4 C 0.13 2.31 6.72 -82.96 -0.56 1.75 16 5 C 0.58 11.26 7.63 -12.14 -0.09 11.17 16 6 O -0.55 -11.35 15.33 5.36 0.08 -11.27 16 7 N -0.57 -10.71 3.06 -163.96 -0.50 -11.22 16 8 C 0.07 1.34 5.62 -2.53 -0.01 1.33 16 9 C 0.16 3.14 3.72 -65.78 -0.24 2.90 16 10 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 11 N -0.71 -17.49 5.23 -51.35 -0.27 -17.76 16 12 C -0.24 -6.50 9.96 -15.06 -0.15 -6.65 16 13 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 14 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 15 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 16 Si 0.90 22.31 29.55 -169.99 -5.02 17.29 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 19 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 20 C -0.14 -2.25 6.07 -24.90 -0.15 -2.40 16 21 C 0.14 2.32 3.45 -66.95 -0.23 2.09 16 22 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 23 C -0.16 -2.31 9.10 37.16 0.34 -1.97 16 24 N -0.43 -7.50 6.51 -7.54 -0.05 -7.55 16 25 C 0.13 1.94 6.61 -84.85 -0.56 1.38 16 26 C -0.08 -1.03 9.99 -39.41 -0.39 -1.43 16 27 C -0.11 -1.15 9.94 -39.94 -0.40 -1.55 16 28 C -0.11 -1.05 9.96 -39.89 -0.40 -1.44 16 29 C -0.11 -1.09 9.31 -39.51 -0.37 -1.46 16 30 C -0.09 -1.18 5.75 -106.71 -0.61 -1.79 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.52 6.51 -51.93 -0.34 0.19 16 33 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.15 2.05 7.60 -52.49 -0.40 1.65 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.11 2.30 5.88 -51.93 -0.31 1.99 16 37 H 0.38 10.34 7.86 -40.82 -0.32 10.02 16 38 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.06 1.06 6.90 -51.93 -0.36 0.70 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.14 1.81 8.06 -52.48 -0.42 1.39 16 45 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.13 0.98 6.43 -52.48 -0.34 0.64 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -33.06 382.53 -10.50 -43.56 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.66 Total: 11.15 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -4.56 Total: -2.44 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: -0.10 Total: -64.05 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.06 -10.50 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989043057.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.361 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds