Wall clock time and date at job start Tue Mar 31 2020 22:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39435 * 119.54115 * 2 1 4 4 C 1.35999 * 121.08263 * 179.97438 * 3 2 1 5 5 C 1.40829 * 119.73690 * 0.02891 * 4 3 2 6 6 N 1.33262 * 120.98777 * 179.97438 * 5 4 3 7 7 C 1.31878 * 121.30048 * 180.02562 * 6 5 4 8 8 C 1.48273 * 119.24173 * 179.97438 * 7 6 5 9 9 O 1.21509 * 120.00129 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99947 * 0.02562 * 8 7 6 11 11 C 1.47420 * 125.65114 * 359.69707 * 10 8 7 12 12 C 1.55125 * 104.72502 * 155.81684 * 11 10 8 13 13 H 1.08998 * 111.22482 * 279.17795 * 12 11 10 14 14 N 1.46500 * 110.90417 * 155.27747 * 12 11 10 15 15 C 1.36941 * 120.00230 * 92.97732 * 14 12 11 16 16 H 1.08000 * 119.99916 * 359.97438 * 15 14 12 17 17 C 1.38813 * 119.99984 * 179.97438 * 15 14 12 18 18 N 1.31620 * 119.99751 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99865 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47389 * 90.00232 * 19 17 15 21 21 H 1.48506 * 109.47065 * 210.00224 * 19 17 15 22 22 H 1.48501 * 109.46960 * 330.00004 * 19 17 15 23 23 C 1.55157 * 101.48692 * 37.29334 * 12 11 10 24 24 C 1.47028 * 125.64658 * 180.02562 * 10 8 7 25 25 H 1.09003 * 109.88072 * 300.43876 * 24 10 8 26 26 C 1.52995 * 109.88601 * 61.45089 * 24 10 8 27 27 C 1.40278 * 121.52028 * 0.02562 * 7 6 5 28 28 C 1.36505 * 119.81361 * 359.97438 * 27 7 6 29 29 C 1.40749 * 118.24577 * 359.97438 * 28 27 7 30 30 C 1.36131 * 119.54211 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.46493 * 89.99808 * 1 2 3 32 32 H 1.08993 * 109.46892 * 210.00255 * 1 2 3 33 33 H 1.08999 * 109.46943 * 330.00431 * 1 2 3 34 34 H 1.08001 * 119.45853 * 359.97438 * 3 2 1 35 35 H 1.07996 * 120.12978 * 179.97438 * 4 3 2 36 36 H 1.09002 * 110.36519 * 274.75093 * 11 10 8 37 37 H 1.09000 * 110.36413 * 37.06643 * 11 10 8 38 38 H 0.97004 * 120.00023 * 272.96653 * 14 12 11 39 39 H 0.97007 * 119.99662 * 179.97438 * 18 17 15 40 40 H 1.08992 * 110.72099 * 205.96728 * 23 12 11 41 41 H 1.09008 * 110.71315 * 82.69683 * 23 12 11 42 42 H 1.09004 * 109.47115 * 58.54403 * 26 24 10 43 43 H 1.08997 * 109.47092 * 178.54917 * 26 24 10 44 44 H 1.09004 * 109.47107 * 298.54461 * 26 24 10 45 45 H 1.08000 * 120.09789 * 180.02562 * 27 7 6 46 46 H 1.08004 * 120.87532 * 179.72458 * 28 27 7 47 47 H 1.08002 * 120.17168 * 0.04199 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1946 1.2131 0.0000 4 6 3.5541 1.2497 0.0005 5 6 4.2852 0.0461 0.0005 6 7 5.6178 0.0528 0.0004 7 6 6.3087 -1.0705 -0.0001 8 6 7.7902 -1.0097 -0.0007 9 8 8.4404 -2.0362 -0.0017 10 7 8.4156 0.1841 -0.0001 11 6 7.7533 1.5011 -0.0052 12 6 8.7962 2.4694 0.6122 13 1 8.7944 2.4096 1.7005 14 7 8.5622 3.8445 0.1643 15 6 7.7854 4.6863 0.9148 16 1 7.3449 4.3363 1.8367 17 6 7.5641 5.9893 0.4906 18 7 8.1014 6.4159 -0.6326 19 14 6.5039 7.1373 1.5140 20 1 7.3580 7.8631 2.4882 21 1 5.8295 8.1149 0.6224 22 1 5.4813 6.3466 2.2451 23 6 10.1203 1.9114 0.0268 24 6 9.8716 0.3886 -0.0011 25 1 10.3116 -0.0749 0.8819 26 6 10.4816 -0.2187 -1.2659 27 6 5.6743 -2.3216 -0.0013 28 6 4.3110 -2.3913 -0.0013 29 6 3.5825 -1.1870 0.0004 30 6 2.1783 -1.1843 0.0005 31 1 -0.3632 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6383 2.1388 -0.0004 35 1 4.0708 2.1980 0.0001 36 1 7.5116 1.8002 -1.0252 37 1 6.8518 1.4747 0.6069 38 1 8.9576 4.1588 -0.6639 39 1 7.9465 7.3265 -0.9292 40 1 10.9614 2.1532 0.6765 41 1 10.2876 2.2931 -0.9805 42 1 10.0316 0.2437 -2.1445 43 1 11.5569 -0.0408 -1.2722 44 1 10.2908 -1.2918 -1.2822 45 1 6.2627 -3.2273 -0.0013 46 1 3.8048 -3.3453 -0.0066 47 1 1.6336 -2.1170 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989162003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:56 Heat of formation + Delta-G solvation = 40.424820 kcal Electronic energy + Delta-G solvation = -29216.604047 eV Core-core repulsion = 25364.589227 eV Total energy + Delta-G solvation = -3852.014820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.13110 -39.73325 -37.75492 -37.01692 -34.18860 -33.73468 -32.51350 -31.38271 -31.11953 -30.36274 -28.38395 -27.53314 -25.36175 -24.49171 -23.93367 -23.40235 -22.23293 -21.54958 -20.20689 -19.25282 -18.05786 -17.39031 -17.11978 -16.85169 -16.06936 -15.54087 -15.18120 -14.81906 -14.45379 -14.40752 -14.20076 -13.96733 -13.74499 -13.48317 -13.41588 -13.30725 -13.16086 -13.00435 -12.57110 -12.45689 -12.21882 -12.09950 -11.68191 -11.66934 -11.54735 -11.34888 -11.10062 -10.98244 -10.77760 -10.70442 -10.60982 -10.24158 -9.99540 -9.97065 -9.73482 -9.35190 -8.87857 -8.83537 -8.33920 -8.23339 -7.02720 -5.81541 -3.11219 0.12380 0.57795 1.83867 2.39026 3.12276 3.26644 3.40545 3.46328 3.47528 4.02297 4.05633 4.38785 4.52055 4.57104 4.58234 4.69727 4.84053 4.94517 5.06103 5.13206 5.22601 5.27444 5.29991 5.30789 5.37494 5.54101 5.59511 5.65262 5.67629 5.79832 5.82407 5.82746 5.90440 5.92270 5.96627 6.16264 6.19609 6.23608 6.30871 6.36864 6.40050 6.43375 6.56704 6.65379 6.67881 6.90963 6.95756 7.65369 7.67144 7.83187 8.32897 8.36964 9.48037 10.02844 10.38166 11.40699 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007537 B = 0.004548 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3714.054711 B = 6155.055868 C = 9578.828266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.072 4.072 3 C -0.107 4.107 4 C -0.072 4.072 5 C 0.117 3.883 6 N -0.421 5.421 7 C 0.116 3.884 8 C 0.577 3.423 9 O -0.547 6.547 10 N -0.585 5.585 11 C 0.078 3.922 12 C 0.168 3.832 13 H 0.066 0.934 14 N -0.711 5.711 15 C -0.243 4.243 16 H 0.072 0.928 17 C -0.009 4.009 18 N -0.931 5.931 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.139 4.139 24 C 0.136 3.864 25 H 0.074 0.926 26 C -0.161 4.161 27 C -0.123 4.123 28 C -0.070 4.070 29 C -0.082 4.082 30 C -0.112 4.112 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.132 0.868 35 H 0.147 0.853 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.148 0.852 46 H 0.143 0.857 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.466 -16.740 0.102 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.072 4.072 3 C -0.127 4.127 4 C -0.090 4.090 5 C -0.006 4.006 6 N -0.132 5.132 7 C -0.038 4.038 8 C 0.364 3.636 9 O -0.426 6.426 10 N -0.316 5.316 11 C -0.048 4.048 12 C 0.055 3.945 13 H 0.084 0.916 14 N -0.350 5.350 15 C -0.374 4.374 16 H 0.090 0.910 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.736 3.264 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.178 4.178 24 C 0.033 3.967 25 H 0.092 0.908 26 C -0.219 4.219 27 C -0.144 4.144 28 C -0.096 4.096 29 C -0.084 4.084 30 C -0.131 4.131 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.164 0.836 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.221 0.779 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.166 0.834 46 H 0.160 0.840 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.874 -16.341 0.225 19.094 hybrid contribution -0.934 0.066 0.147 0.948 sum -10.808 -16.275 0.372 19.541 Atomic orbital electron populations 1.20862 0.90807 1.03078 1.02606 1.19772 0.96482 0.93036 0.97937 1.20863 0.94059 0.97872 0.99922 1.21077 0.93626 0.97486 0.96823 1.18990 0.89174 0.92924 0.99558 1.68311 1.06990 1.28979 1.08961 1.21337 0.94370 0.89503 0.98544 1.17564 0.85549 0.82796 0.77721 1.90726 1.65972 1.33522 1.52357 1.48507 1.07677 1.06472 1.68954 1.23851 0.98696 0.79753 1.02469 1.21439 0.90502 0.85552 0.96962 0.91631 1.42288 1.59641 1.05979 1.27105 1.19255 1.22831 0.92217 1.03060 0.91023 1.24732 1.00910 0.97379 0.97512 1.69663 1.48498 1.17260 1.22424 0.86219 0.80046 0.80891 0.79199 1.21686 1.21773 1.20681 1.23062 0.99950 0.92109 1.02635 1.21598 0.80094 0.96591 0.98423 0.90839 1.22130 1.00477 1.01936 0.97327 1.21695 0.95030 0.98712 0.98941 1.21388 0.93645 0.97676 0.96844 1.18947 0.94796 0.93991 1.00716 1.20779 0.92112 0.98175 1.02012 0.90830 0.91403 0.91139 0.84998 0.83555 0.91545 0.88284 0.77922 0.93436 0.90372 0.90418 0.92521 0.91790 0.91582 0.83421 0.83950 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.98 36.01 0.36 -0.41 16 2 C -0.07 -0.69 5.85 -104.93 -0.61 -1.31 16 3 C -0.11 -1.18 9.58 -39.94 -0.38 -1.56 16 4 C -0.07 -0.98 9.99 -39.41 -0.39 -1.37 16 5 C 0.12 1.72 6.61 -84.86 -0.56 1.16 16 6 N -0.42 -6.92 6.51 -7.54 -0.05 -6.97 16 7 C 0.12 1.85 6.73 -82.95 -0.56 1.29 16 8 C 0.58 10.02 7.63 -12.13 -0.09 9.93 16 9 O -0.55 -10.12 15.31 5.36 0.08 -10.04 16 10 N -0.58 -10.06 3.06 -163.82 -0.50 -10.56 16 11 C 0.08 1.44 5.64 -2.41 -0.01 1.43 16 12 C 0.17 3.28 3.73 -65.66 -0.24 3.03 16 13 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 14 N -0.71 -17.07 5.24 -51.24 -0.27 -17.33 16 15 C -0.24 -6.46 9.96 -15.06 -0.15 -6.61 16 16 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -27.21 13.06 55.49 0.72 -26.49 16 19 Si 0.91 21.70 29.55 -169.99 -5.02 16.68 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 C -0.14 -2.26 6.13 -24.90 -0.15 -2.41 16 24 C 0.14 2.12 3.45 -66.95 -0.23 1.89 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 C -0.16 -2.29 9.11 37.16 0.34 -1.95 16 27 C -0.12 -1.59 9.54 -39.44 -0.38 -1.97 16 28 C -0.07 -0.76 9.88 -39.26 -0.39 -1.14 16 29 C -0.08 -1.01 5.75 -106.72 -0.61 -1.62 16 30 C -0.11 -1.11 9.37 -39.52 -0.37 -1.48 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.37 8.07 -51.93 -0.42 -0.05 16 33 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 34 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.15 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.10 1.92 5.86 -51.93 -0.30 1.62 16 38 H 0.39 9.87 7.76 -40.82 -0.32 9.56 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.29 7.72 -51.92 -0.40 0.89 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 1.01 6.87 -51.93 -0.36 0.65 16 45 H 0.15 1.72 7.60 -52.49 -0.40 1.32 16 46 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 47 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 385.75 15.07 5.81 5.81 Total: -1.00 -31.20 385.75 -10.57 -41.77 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -6.81 Total: 10.56 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: -4.54 Total: -3.43 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: -0.10 Total: -61.36 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.04 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.20 -10.57 -41.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989162003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.197 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds