Wall clock time and date at job start Tue Mar 31 2020 22:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39435 * 119.54115 * 2 1 4 4 C 1.35999 * 121.08263 * 179.97438 * 3 2 1 5 5 C 1.40829 * 119.73690 * 0.02891 * 4 3 2 6 6 N 1.33262 * 120.98777 * 179.97438 * 5 4 3 7 7 C 1.31878 * 121.30048 * 180.02562 * 6 5 4 8 8 C 1.48273 * 119.24173 * 179.97438 * 7 6 5 9 9 O 1.21509 * 120.00129 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99947 * 0.02562 * 8 7 6 11 11 C 1.47420 * 125.65114 * 359.69707 * 10 8 7 12 12 C 1.55125 * 104.72502 * 155.81684 * 11 10 8 13 13 H 1.08998 * 111.22482 * 279.17795 * 12 11 10 14 14 N 1.46500 * 110.90417 * 155.27747 * 12 11 10 15 15 C 1.36941 * 120.00230 * 92.97732 * 14 12 11 16 16 H 1.08000 * 119.99916 * 359.97438 * 15 14 12 17 17 C 1.38813 * 119.99984 * 179.97438 * 15 14 12 18 18 N 1.31620 * 119.99751 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99865 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47389 * 90.00232 * 19 17 15 21 21 H 1.48506 * 109.47065 * 210.00224 * 19 17 15 22 22 H 1.48501 * 109.46960 * 330.00004 * 19 17 15 23 23 C 1.55157 * 101.48692 * 37.29334 * 12 11 10 24 24 C 1.47028 * 125.64658 * 180.02562 * 10 8 7 25 25 H 1.09003 * 109.88072 * 300.43876 * 24 10 8 26 26 C 1.52995 * 109.88601 * 61.45089 * 24 10 8 27 27 C 1.40278 * 121.52028 * 0.02562 * 7 6 5 28 28 C 1.36505 * 119.81361 * 359.97438 * 27 7 6 29 29 C 1.40749 * 118.24577 * 359.97438 * 28 27 7 30 30 C 1.36131 * 119.54211 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.46493 * 89.99808 * 1 2 3 32 32 H 1.08993 * 109.46892 * 210.00255 * 1 2 3 33 33 H 1.08999 * 109.46943 * 330.00431 * 1 2 3 34 34 H 1.08001 * 119.45853 * 359.97438 * 3 2 1 35 35 H 1.07996 * 120.12978 * 179.97438 * 4 3 2 36 36 H 1.09002 * 110.36519 * 274.75093 * 11 10 8 37 37 H 1.09000 * 110.36413 * 37.06643 * 11 10 8 38 38 H 0.97004 * 120.00023 * 272.96653 * 14 12 11 39 39 H 0.97007 * 119.99662 * 179.97438 * 18 17 15 40 40 H 1.08992 * 110.72099 * 205.96728 * 23 12 11 41 41 H 1.09008 * 110.71315 * 82.69683 * 23 12 11 42 42 H 1.09004 * 109.47115 * 58.54403 * 26 24 10 43 43 H 1.08997 * 109.47092 * 178.54917 * 26 24 10 44 44 H 1.09004 * 109.47107 * 298.54461 * 26 24 10 45 45 H 1.08000 * 120.09789 * 180.02562 * 27 7 6 46 46 H 1.08004 * 120.87532 * 179.72458 * 28 27 7 47 47 H 1.08002 * 120.17168 * 0.04199 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1946 1.2131 0.0000 4 6 3.5541 1.2497 0.0005 5 6 4.2852 0.0461 0.0005 6 7 5.6178 0.0528 0.0004 7 6 6.3087 -1.0705 -0.0001 8 6 7.7902 -1.0097 -0.0007 9 8 8.4404 -2.0362 -0.0017 10 7 8.4156 0.1841 -0.0001 11 6 7.7533 1.5011 -0.0052 12 6 8.7962 2.4694 0.6122 13 1 8.7944 2.4096 1.7005 14 7 8.5622 3.8445 0.1643 15 6 7.7854 4.6863 0.9148 16 1 7.3449 4.3363 1.8367 17 6 7.5641 5.9893 0.4906 18 7 8.1014 6.4159 -0.6326 19 14 6.5039 7.1373 1.5140 20 1 7.3580 7.8631 2.4882 21 1 5.8295 8.1149 0.6224 22 1 5.4813 6.3466 2.2451 23 6 10.1203 1.9114 0.0268 24 6 9.8716 0.3886 -0.0011 25 1 10.3116 -0.0749 0.8819 26 6 10.4816 -0.2187 -1.2659 27 6 5.6743 -2.3216 -0.0013 28 6 4.3110 -2.3913 -0.0013 29 6 3.5825 -1.1870 0.0004 30 6 2.1783 -1.1843 0.0005 31 1 -0.3632 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6383 2.1388 -0.0004 35 1 4.0708 2.1980 0.0001 36 1 7.5116 1.8002 -1.0252 37 1 6.8518 1.4747 0.6069 38 1 8.9576 4.1588 -0.6639 39 1 7.9465 7.3265 -0.9292 40 1 10.9614 2.1532 0.6765 41 1 10.2876 2.2931 -0.9805 42 1 10.0316 0.2437 -2.1445 43 1 11.5569 -0.0408 -1.2722 44 1 10.2908 -1.2918 -1.2822 45 1 6.2627 -3.2273 -0.0013 46 1 3.8048 -3.3453 -0.0066 47 1 1.6336 -2.1170 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989162003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:55 Heat of formation + Delta-G solvation = 23.156198 kcal Electronic energy + Delta-G solvation = -29217.352870 eV Core-core repulsion = 25364.589227 eV Total energy + Delta-G solvation = -3852.763643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.17608 -41.00564 -38.99536 -38.17457 -36.01664 -34.72032 -33.53396 -33.20128 -32.30405 -31.29801 -30.09501 -28.39230 -26.73451 -25.90778 -25.31921 -24.57001 -23.17588 -22.75383 -21.79304 -20.51136 -19.30746 -18.99384 -18.44680 -17.84726 -17.43436 -16.91077 -16.38091 -16.29967 -15.73197 -15.44790 -15.36680 -15.15313 -15.11876 -14.79683 -14.64794 -14.36428 -14.16990 -14.10581 -13.95161 -13.70506 -13.46310 -13.16703 -13.06709 -12.87639 -12.80608 -12.51435 -12.45753 -12.28808 -12.22507 -12.08847 -12.04042 -11.76177 -11.63898 -11.50636 -11.30408 -11.02949 -10.35326 -9.85372 -9.61797 -9.21035 -9.02699 -7.93952 -5.23504 -0.85784 -0.37041 0.89038 1.33653 1.48659 1.49547 1.58038 1.83227 2.14748 2.56377 2.89249 3.04071 3.36934 3.42916 3.56249 3.71057 3.76995 3.83500 3.87887 3.97814 3.99704 4.14446 4.16237 4.30880 4.33003 4.39282 4.46706 4.50351 4.65763 4.72331 4.75740 4.81504 4.88239 4.88906 4.98297 5.01764 5.04893 5.07910 5.17912 5.22148 5.24270 5.30594 5.36314 5.40025 5.51142 5.53733 5.54841 5.85443 6.26613 6.39848 6.59805 7.01493 7.34337 8.04943 8.30930 9.29065 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007537 B = 0.004548 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3714.054711 B = 6155.055868 C = 9578.828266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.073 4.073 3 C -0.096 4.096 4 C -0.108 4.108 5 C 0.091 3.909 6 N -0.455 5.455 7 C 0.090 3.910 8 C 0.574 3.426 9 O -0.561 6.561 10 N -0.589 5.589 11 C 0.100 3.900 12 C 0.162 3.838 13 H 0.062 0.938 14 N -0.720 5.720 15 C -0.241 4.241 16 H 0.074 0.926 17 C -0.067 4.067 18 N -0.966 5.966 19 Si 0.968 3.032 20 H -0.287 1.287 21 H -0.295 1.295 22 H -0.270 1.270 23 C -0.125 4.125 24 C 0.134 3.866 25 H 0.083 0.917 26 C -0.152 4.152 27 C -0.135 4.135 28 C -0.047 4.047 29 C -0.092 4.092 30 C -0.103 4.103 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.377 0.623 39 H 0.251 0.749 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.056 0.944 45 H 0.159 0.841 46 H 0.190 0.810 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.842 -18.933 0.806 22.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.073 4.073 3 C -0.115 4.115 4 C -0.126 4.126 5 C -0.033 4.033 6 N -0.167 5.167 7 C -0.062 4.062 8 C 0.362 3.638 9 O -0.441 6.441 10 N -0.320 5.320 11 C -0.025 4.025 12 C 0.051 3.949 13 H 0.080 0.920 14 N -0.359 5.359 15 C -0.373 4.373 16 H 0.092 0.908 17 C -0.259 4.259 18 N -0.616 5.616 19 Si 0.797 3.203 20 H -0.214 1.214 21 H -0.222 1.222 22 H -0.195 1.195 23 C -0.164 4.164 24 C 0.031 3.969 25 H 0.101 0.899 26 C -0.209 4.209 27 C -0.156 4.156 28 C -0.073 4.073 29 C -0.094 4.094 30 C -0.121 4.121 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.167 0.833 35 H 0.139 0.861 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.209 0.791 39 H 0.060 0.940 40 H 0.114 0.886 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.075 0.925 45 H 0.176 0.824 46 H 0.207 0.793 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -12.241 -18.583 0.953 22.272 hybrid contribution -0.324 0.674 -0.067 0.751 sum -12.565 -17.908 0.886 21.894 Atomic orbital electron populations 1.20932 0.88018 1.04406 1.03702 1.20171 0.98384 0.92209 0.96540 1.21169 0.92989 0.99713 0.97672 1.21012 0.94943 0.96505 1.00170 1.19265 0.88827 0.94499 1.00687 1.68143 1.08369 1.29821 1.10318 1.21316 0.93527 0.90828 1.00574 1.17908 0.86508 0.82384 0.76994 1.90695 1.66635 1.33665 1.53086 1.48529 1.08252 1.05940 1.69307 1.23344 0.98024 0.80475 1.00690 1.21569 0.92704 0.83792 0.96851 0.91976 1.42376 1.59439 1.07469 1.26593 1.19578 1.22142 0.92614 1.02971 0.90795 1.25472 1.02717 0.98966 0.98775 1.69811 1.50369 1.17292 1.24177 0.85226 0.78618 0.78796 0.77649 1.21445 1.22193 1.19508 1.22959 0.98538 0.92315 1.02557 1.21728 0.79438 0.96042 0.99675 0.89877 1.22054 1.01932 1.00923 0.96040 1.21823 0.96228 0.97685 0.99845 1.21869 0.92670 0.98973 0.93766 1.19245 0.96187 0.93419 1.00537 1.21217 0.90930 0.99939 1.00020 0.89659 0.89491 0.90519 0.83281 0.86114 0.93785 0.89338 0.79059 0.93984 0.88574 0.90652 0.93352 0.89181 0.92516 0.82386 0.79275 0.81368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.98 71.24 0.71 -0.31 16 2 C -0.07 -1.19 5.85 -20.06 -0.12 -1.30 16 3 C -0.10 -2.02 9.58 22.04 0.21 -1.81 16 4 C -0.11 -3.09 9.99 22.38 0.22 -2.87 16 5 C 0.09 2.75 6.61 40.47 0.27 3.02 16 6 N -0.45 -15.83 6.51 -177.77 -1.16 -16.98 16 7 C 0.09 2.95 6.73 42.30 0.28 3.24 16 8 C 0.57 20.54 7.63 86.91 0.66 21.20 16 9 O -0.56 -20.97 15.31 -3.74 -0.06 -21.03 16 10 N -0.59 -20.95 3.06 -790.51 -2.42 -23.38 16 11 C 0.10 3.96 5.64 86.93 0.49 4.45 16 12 C 0.16 6.52 3.73 46.46 0.17 6.70 16 13 H 0.06 2.55 8.09 -2.39 -0.02 2.53 16 14 N -0.72 -35.83 5.24 -316.02 -1.66 -37.49 16 15 C -0.24 -13.19 9.96 84.03 0.84 -12.35 16 16 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 17 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 18 N -0.97 -58.13 13.06 21.65 0.28 -57.84 16 19 Si 0.97 45.43 29.55 68.60 2.03 47.45 16 20 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 21 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 C -0.13 -4.09 6.13 31.78 0.19 -3.89 16 24 C 0.13 4.17 3.45 45.34 0.16 4.32 16 25 H 0.08 2.45 8.14 -2.39 -0.02 2.44 16 26 C -0.15 -4.24 9.11 71.98 0.66 -3.58 16 27 C -0.14 -3.38 9.54 22.36 0.21 -3.17 16 28 C -0.05 -0.90 9.88 22.48 0.22 -0.68 16 29 C -0.09 -2.09 5.75 -21.22 -0.12 -2.21 16 30 C -0.10 -1.65 9.37 22.31 0.21 -1.44 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.50 8.07 -2.39 -0.02 0.48 16 33 H 0.08 0.63 8.08 -2.39 -0.02 0.61 16 34 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 35 H 0.12 3.93 8.06 -2.91 -0.02 3.90 16 36 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.09 3.70 5.86 -2.39 -0.01 3.69 16 38 H 0.38 20.04 7.76 -92.71 -0.72 19.32 16 39 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 40 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 41 H 0.07 2.52 7.72 -2.38 -0.02 2.50 16 42 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 43 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.06 1.71 6.87 -2.38 -0.02 1.69 16 45 H 0.16 3.51 7.60 -2.91 -0.02 3.49 16 46 H 0.19 1.73 8.06 -2.91 -0.02 1.71 16 47 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -70.71 385.75 3.03 -67.68 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: 0.27 Total: 35.55 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.74 Total: 6.03 kcal Atomic # 7 Polarization: -130.74 SS G_CDS: -4.95 Total: -135.69 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.06 Total: -21.03 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.45 kcal Total: -70.71 3.03 -67.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989162003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.837 kcal (2) G-P(sol) polarization free energy of solvation -70.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds